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The map label for this gene is dppD [H]

Identifier: 239617885

GI number: 239617885

Start: 1623109

End: 1624146

Strand: Reverse

Name: dppD [H]

Synonym: Kole_1513

Alternate gene names: 239617885

Gene position: 1624146-1623109 (Counterclockwise)

Preceding gene: 239617891

Following gene: 239617884

Centisome position: 70.55

GC content: 44.51

Gene sequence:

>1038_bases
TTGGGTGACAAACCAATACTCTCAGTCAAGAATCTGAGGACATACTTTGACATGGCCGAAGGGACAGTTAAAGCTGTTCA
AGATGTTTCTTTCGACCTGTACCGCAATGAAGTCCTTGGAATCGTCGGAGAAACCGGTTCCGGTAAGAGTGTTACTGTAA
AGAGTATCGCTGGTCTTATCGATAAGCCGGGGTACATTGCCGGAGGCGAAATCTTATTCTACACTGATGAATTTTCAAAG
GACGGGAATCCCGAATACATGGACTTAGCCAAACTAAAAAAAGAGGATTTTTCCAGGATTCGCGGAAAGCATATCGGTAT
GATCTTCCAGGACCCTATGACTTCACTGGATCCGATGTACACCATTGGTGACCAGATGATAGAAACCATCGTTCATCATG
AAGGGGTTTCCGAAGAAGAAGCAAGGGAAAGAGCGATCCGTCTTTTGGAACAGGTGGGTATTCCTAAACCTGAAGAAAGG
ATCGATGATTATCCCTTCCAGCTTTCCGGCGGACAGAGGCAGAGAGTCGTCATCGCTATCGCGTTATCCTGTAATCCAGA
AATACTTATTGCCGATGAGCCAACAACTGCTCTGGATGTTACCGTTCAGACACAGATACTCGAGTTGATGAAAAATCTTC
AACAGCAATACAAAAGTGGTATGATATTTATTACCCACGACCTTGCGGTAATTGCGGAGATTGCCACAAAGGTTTCCGTC
ATGTACGGAAGTTACCAGATGGAAATTGCACCTTCAGAAACGATATTCGAAAAACCCATGAGCCCGTACACGCACGCTCT
CTTGCATTGTATTCCCAGACTCGATATAAAACAGGAAGAATTGGCACCAATACCCGGCCAGCCACCTGTAATGATGAATC
CTCCTAAACTTTGTCCATTCCTGCCGCGTTGTGAACGCGCTACAGAAAAATGCAGGAAAGAACTGCCACCTTTGGAGGAA
GTGGAAAGCGGTCATTTTGTTAGATGTTTCAATCCTGTTGTTAATAAAGTATCTGTTGTCAAGGAGGAAATTAAATGA

Upstream 100 bases:

>100_bases
CCCACCACTTGATATTTGATGCCTTTCTATGTAATAATTATACTGTAAATTGTTCCGGGGGAATTCTTTTCAAACCAAAA
TCTGTAATGAGGTGATCCCA

Downstream 100 bases:

>100_bases
AATTGTTAGAAGTGAGGAACTTAAAAAAATACTTCCCCATAAAACAGGGTTTTCTCATTGACAGGGTGGTTGGTTATGTT
AAAGCGGTAGATGATGTCTC

Product: oligopeptide/dipeptide ABC transporter, ATPase subunit

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MGDKPILSVKNLRTYFDMAEGTVKAVQDVSFDLYRNEVLGIVGETGSGKSVTVKSIAGLIDKPGYIAGGEILFYTDEFSK
DGNPEYMDLAKLKKEDFSRIRGKHIGMIFQDPMTSLDPMYTIGDQMIETIVHHEGVSEEEARERAIRLLEQVGIPKPEER
IDDYPFQLSGGQRQRVVIAIALSCNPEILIADEPTTALDVTVQTQILELMKNLQQQYKSGMIFITHDLAVIAEIATKVSV
MYGSYQMEIAPSETIFEKPMSPYTHALLHCIPRLDIKQEELAPIPGQPPVMMNPPKLCPFLPRCERATEKCRKELPPLEE
VESGHFVRCFNPVVNKVSVVKEEIK

Sequences:

>Translated_345_residues
MGDKPILSVKNLRTYFDMAEGTVKAVQDVSFDLYRNEVLGIVGETGSGKSVTVKSIAGLIDKPGYIAGGEILFYTDEFSK
DGNPEYMDLAKLKKEDFSRIRGKHIGMIFQDPMTSLDPMYTIGDQMIETIVHHEGVSEEEARERAIRLLEQVGIPKPEER
IDDYPFQLSGGQRQRVVIAIALSCNPEILIADEPTTALDVTVQTQILELMKNLQQQYKSGMIFITHDLAVIAEIATKVSV
MYGSYQMEIAPSETIFEKPMSPYTHALLHCIPRLDIKQEELAPIPGQPPVMMNPPKLCPFLPRCERATEKCRKELPPLEE
VESGHFVRCFNPVVNKVSVVKEEIK
>Mature_344_residues
GDKPILSVKNLRTYFDMAEGTVKAVQDVSFDLYRNEVLGIVGETGSGKSVTVKSIAGLIDKPGYIAGGEILFYTDEFSKD
GNPEYMDLAKLKKEDFSRIRGKHIGMIFQDPMTSLDPMYTIGDQMIETIVHHEGVSEEEARERAIRLLEQVGIPKPEERI
DDYPFQLSGGQRQRVVIAIALSCNPEILIADEPTTALDVTVQTQILELMKNLQQQYKSGMIFITHDLAVIAEIATKVSVM
YGSYQMEIAPSETIFEKPMSPYTHALLHCIPRLDIKQEELAPIPGQPPVMMNPPKLCPFLPRCERATEKCRKELPPLEEV
ESGHFVRCFNPVVNKVSVVKEEIK

Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system. Expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation [H]

COG id: COG0444

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=217, Percent_Identity=25.8064516129032, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI9665248, Length=244, Percent_Identity=27.8688524590164, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI27477115, Length=273, Percent_Identity=22.3443223443223, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI48994883, Length=328, Percent_Identity=45.1219512195122, Blast_Score=293, Evalue=1e-80,
Organism=Escherichia coli, GI1789963, Length=328, Percent_Identity=44.5121951219512, Blast_Score=285, Evalue=4e-78,
Organism=Escherichia coli, GI145693107, Length=269, Percent_Identity=46.4684014869888, Blast_Score=245, Evalue=3e-66,
Organism=Escherichia coli, GI1787759, Length=338, Percent_Identity=38.4615384615385, Blast_Score=243, Evalue=2e-65,
Organism=Escherichia coli, GI1788506, Length=274, Percent_Identity=41.6058394160584, Blast_Score=212, Evalue=3e-56,
Organism=Escherichia coli, GI1789962, Length=335, Percent_Identity=36.1194029850746, Blast_Score=204, Evalue=8e-54,
Organism=Escherichia coli, GI1787500, Length=345, Percent_Identity=35.0724637681159, Blast_Score=202, Evalue=2e-53,
Organism=Escherichia coli, GI1787548, Length=337, Percent_Identity=32.9376854599407, Blast_Score=194, Evalue=8e-51,
Organism=Escherichia coli, GI1787758, Length=314, Percent_Identity=32.8025477707006, Blast_Score=160, Evalue=9e-41,
Organism=Escherichia coli, GI48994997, Length=273, Percent_Identity=34.0659340659341, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1789890, Length=243, Percent_Identity=34.156378600823, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1787547, Length=268, Percent_Identity=31.3432835820896, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1786398, Length=283, Percent_Identity=27.9151943462898, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1789032, Length=258, Percent_Identity=31.3953488372093, Blast_Score=118, Evalue=7e-28,
Organism=Escherichia coli, GI1786703, Length=245, Percent_Identity=32.2448979591837, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1789891, Length=233, Percent_Identity=33.0472103004292, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1788225, Length=266, Percent_Identity=31.5789473684211, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787105, Length=233, Percent_Identity=31.7596566523605, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787089, Length=249, Percent_Identity=30.1204819277108, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1788761, Length=272, Percent_Identity=27.2058823529412, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1790162, Length=260, Percent_Identity=28.4615384615385, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788644, Length=190, Percent_Identity=35.7894736842105, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1786872, Length=266, Percent_Identity=30.8270676691729, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI87081834, Length=253, Percent_Identity=29.6442687747036, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787029, Length=233, Percent_Identity=30.0429184549356, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87081791, Length=260, Percent_Identity=27.6923076923077, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787712, Length=267, Percent_Identity=28.4644194756554, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789672, Length=263, Percent_Identity=27.3764258555133, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1789873, Length=214, Percent_Identity=32.7102803738318, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87081709, Length=274, Percent_Identity=25.5474452554745, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786563, Length=217, Percent_Identity=30.4147465437788, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87082267, Length=252, Percent_Identity=25.7936507936508, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1790467, Length=250, Percent_Identity=26, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787370, Length=267, Percent_Identity=25.0936329588015, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1788450, Length=244, Percent_Identity=26.2295081967213, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1789991, Length=238, Percent_Identity=27.7310924369748, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789864, Length=265, Percent_Identity=24.1509433962264, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1790525, Length=226, Percent_Identity=27.4336283185841, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI48995001, Length=250, Percent_Identity=24, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790190, Length=242, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1786319, Length=209, Percent_Identity=25.8373205741627, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787164, Length=204, Percent_Identity=28.921568627451, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786803, Length=253, Percent_Identity=23.3201581027668, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI115534520, Length=230, Percent_Identity=31.304347826087, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI193208177, Length=250, Percent_Identity=28.8, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17558664, Length=255, Percent_Identity=27.843137254902, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193211015, Length=239, Percent_Identity=25.9414225941423, Blast_Score=65, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71996809, Length=239, Percent_Identity=25.9414225941423, Blast_Score=65, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI193211017, Length=239, Percent_Identity=25.9414225941423, Blast_Score=65, Evalue=8e-11,
Organism=Drosophila melanogaster, GI28574744, Length=179, Percent_Identity=31.2849162011173, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24641565, Length=211, Percent_Identity=30.3317535545024, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI28574533, Length=224, Percent_Identity=26.3392857142857, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582014, Length=223, Percent_Identity=24.6636771300448, Blast_Score=65, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24582012, Length=223, Percent_Identity=24.6636771300448, Blast_Score=65, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 38729; Mature: 38598

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDKPILSVKNLRTYFDMAEGTVKAVQDVSFDLYRNEVLGIVGETGSGKSVTVKSIAGLI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEHHHHHHHH
DKPGYIAGGEILFYTDEFSKDGNPEYMDLAKLKKEDFSRIRGKHIGMIFQDPMTSLDPMY
CCCCEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHH
TIGDQMIETIVHHEGVSEEEARERAIRLLEQVGIPKPEERIDDYPFQLSGGQRQRVVIAI
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCEEECCCCCEEEEEEE
ALSCNPEILIADEPTTALDVTVQTQILELMKNLQQQYKSGMIFITHDLAVIAEIATKVSV
EEECCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHH
MYGSYQMEIAPSETIFEKPMSPYTHALLHCIPRLDIKQEELAPIPGQPPVMMNPPKLCPF
EECCEEEEECCCHHHHHCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEECCCCCCCC
LPRCERATEKCRKELPPLEEVESGHFVRCFNPVVNKVSVVKEEIK
CHHHHHHHHHHHHHCCCHHHHCCCCEEEEHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GDKPILSVKNLRTYFDMAEGTVKAVQDVSFDLYRNEVLGIVGETGSGKSVTVKSIAGLI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEHHHHHHHH
DKPGYIAGGEILFYTDEFSKDGNPEYMDLAKLKKEDFSRIRGKHIGMIFQDPMTSLDPMY
CCCCEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHH
TIGDQMIETIVHHEGVSEEEARERAIRLLEQVGIPKPEERIDDYPFQLSGGQRQRVVIAI
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCEEECCCCCEEEEEEE
ALSCNPEILIADEPTTALDVTVQTQILELMKNLQQQYKSGMIFITHDLAVIAEIATKVSV
EEECCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHH
MYGSYQMEIAPSETIFEKPMSPYTHALLHCIPRLDIKQEELAPIPGQPPVMMNPPKLCPF
EECCEEEEECCCHHHHHCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEECCCCCCCC
LPRCERATEKCRKELPPLEEVESGHFVRCFNPVVNKVSVVKEEIK
CHHHHHHHHHHHHHCCCHHHHCCCCEEEEHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]