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The map label for this gene is ydcI [H]

Identifier: 239617308

GI number: 239617308

Start: 969584

End: 971731

Strand: Reverse

Name: ydcI [H]

Synonym: Kole_0917

Alternate gene names: 239617308

Gene position: 971731-969584 (Counterclockwise)

Preceding gene: 239617309

Following gene: 239617286

Centisome position: 42.21

GC content: 41.48

Gene sequence:

>2148_bases
GTGATTGATTTTACAGTAGAGATAGCGAAAAAACTTGGTTTGCCAACATGGAAGGTCAAAAACTCCATTGAACTCCTTGA
AGAAGGAAAGACAATTCCTTTTATTGCAAGATATCGAAAAGAGAAAACAGGAGAATTGAATGAAATTCAGATTAGGGAAA
TCGCTGATATGCTGGAGTATCTTAAAAAGCTGGAAACAAGGAAAGAGGAAGTTTTAAGATTAATAAGTGAAAAAGGCAAA
CTGACTCCAGAGCTTGAAAAGGCGATAAAAACCTCTGAAAGCCTTCAGGAAGTGGAAGATTTGTATCTTCCCTATAAAAC
CCGAAAGAAGACAAAAGCTGACATGGCGAGGGAAAAAGGGCTTGAACCGCTTGCTGAATTCCTTTTATCGGCGAAATCTC
GTGATGACAACTTCGTTCAAAGCTTTATATCGGAGGAAAAGGGGATAGTGTCTATCGAGGAAGCTTTGGTAGGCGCGAAG
GATATTATAGCGGAAAAGATATCTCACAATGTTGAAATAAGAGTTTTTTTACGAACGTTGTTCAGTGAAAAAGGAATAGT
GAAATGCTTACGAGGGGACGCCGAAGACCCGAAAGGCATTTATCGAGACTATTATGAGTTTTCGCAACCTATTAAAAAAA
TCCCTTCACATAGAATTCTCGCCATATTTAGAGGAGAACGGGAAAAAGTTCTAAAAGTTACTCTGTCACTTCCCTTCGAC
CCTGGCTCTTCGCTTCAAAAGAAACTTGGAATTTCCTCTTCTTTAGCGTATTTTTCCGAACTTCTGGAAGCGTTGAAAGA
CTCTTATGAAAGGCTGTTGAAACCATCTATCGAGCGAGAAGTCAGGAGTGATCTAAAGGTTTCTGCCGAAGACAGGGCGA
TCAAAGTTTTCGCAAAGAATTTGAGAAACCTCTTGCTGCAACCACCGATGGGCGAAAAGGTTGTTATGGGAATTGATCCT
GGCTACCGTACAGGTTGTAAGATAGCGGTGGTTGGAAAAGATAGCTCAGTTCTTTACCACGATACTATTTATCCGACACC
ACCGCGAAATGATAAAAAATCCGCGCAGATGAAAGTGGCTAATGCGGTAAGACTGCTTGGAGTAGAGATAATAGCCATTG
GAAATGGAACCGCTTCACGTGAAACTGCGAGTTTTGTGGCTGAAACCATTAGAACCTGCAATCTGAATTGTAAATTCATG
ATCGTTTCCGAAGCCGGAGCATCTGTATATTCGGCGTCCAAGACGGCTACTGAGGAACTCCCAGAATATGATGTAACTAC
CCGTGGTGCAATTTCAATCGCGAGAAGGGTTCAGGATCCCCTTGCCGAGTATGTGAAAATCCCGCCTGAATCGATAGGTG
TGGGAATGTACCAACACGATGTGTCGAGAAAAAACTTAAAAAAAGCACTCGATAGAGAAGTGGAATCTGTGGTCAACTAC
GTGGGAGTTAACCTTAACACCGCTTCAGAACATTTACTGAAGTACATATCCGGCCTAAATGCGAGAATGGCAAGAAACAT
TGTTGAGTACAGAAAACAGGTTGGACTTTTCAAAAAGAGGGAAGACCTATTGAAAGTCAAAGGAATCGGTAACAAGGCAT
TTGAGCAGGCTGCTGGATTCTGCAGGATAATAGATGGTGAGGAACCTTTAGATAACACCATTGTTCATCCTGAATCCTAT
CATATTGCCCGTGAAGTATTGAAAGAAGTAGGAATTCTCCCGGAAGAAATAATCCGGAAACGTGAAGAGTTAAGAGGAAA
ACTGGAAGAATTCGATATAGAAAGTTTCGTAAAAAAAGCGGGGTTCAATCCCATTACTGTAAAAGAGGTAGTAAAAGCAT
TAAAGAATCCCGGGCTTGATCCACGGGACGAATTGCCAAAACCCATACTGCACGATGATGTTCTTTCAATAGAAGACTTA
AGACCTGATATGGAACTTGAGGGTACCGTAAGGAACGTAGTGGATTTTGGAGCTTTTGTCGATATCGGCGTCAAGCAGGA
CGGATTGATCCATAAAACAAGAATGGGAAAAAATGTTTGCGATCCTCTCGAAGTTCTGTCTGTTGGACAGATTGTAAAAG
TAAAAGTTCTGAGTATTGACCTCGAAAGGGAAAGAATCGCCCTTGAACTCGTAGAAAAACGTTTTTGA

Upstream 100 bases:

>100_bases
CTGATAGAACACGGTTTTTCAGGCATAGTACTTTCCAATGAAACAGTATCCGGGAATTTCCCAATTGAAGTAGTTAAGGT
TGTCAGGGAGGTTATCAGCG

Downstream 100 bases:

>100_bases
TTTTACCGTTGTTATGATAATTTCCAGCCTGTTATTACGAAACTTGCGCCACCATCAGGTGGATCCTCAACCTTTACGGT
TAATCCCAACGTATCACAGA

Product: RNA binding S1 domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 715; Mature: 715

Protein sequence:

>715_residues
MIDFTVEIAKKLGLPTWKVKNSIELLEEGKTIPFIARYRKEKTGELNEIQIREIADMLEYLKKLETRKEEVLRLISEKGK
LTPELEKAIKTSESLQEVEDLYLPYKTRKKTKADMAREKGLEPLAEFLLSAKSRDDNFVQSFISEEKGIVSIEEALVGAK
DIIAEKISHNVEIRVFLRTLFSEKGIVKCLRGDAEDPKGIYRDYYEFSQPIKKIPSHRILAIFRGEREKVLKVTLSLPFD
PGSSLQKKLGISSSLAYFSELLEALKDSYERLLKPSIEREVRSDLKVSAEDRAIKVFAKNLRNLLLQPPMGEKVVMGIDP
GYRTGCKIAVVGKDSSVLYHDTIYPTPPRNDKKSAQMKVANAVRLLGVEIIAIGNGTASRETASFVAETIRTCNLNCKFM
IVSEAGASVYSASKTATEELPEYDVTTRGAISIARRVQDPLAEYVKIPPESIGVGMYQHDVSRKNLKKALDREVESVVNY
VGVNLNTASEHLLKYISGLNARMARNIVEYRKQVGLFKKREDLLKVKGIGNKAFEQAAGFCRIIDGEEPLDNTIVHPESY
HIAREVLKEVGILPEEIIRKREELRGKLEEFDIESFVKKAGFNPITVKEVVKALKNPGLDPRDELPKPILHDDVLSIEDL
RPDMELEGTVRNVVDFGAFVDIGVKQDGLIHKTRMGKNVCDPLEVLSVGQIVKVKVLSIDLERERIALELVEKRF

Sequences:

>Translated_715_residues
MIDFTVEIAKKLGLPTWKVKNSIELLEEGKTIPFIARYRKEKTGELNEIQIREIADMLEYLKKLETRKEEVLRLISEKGK
LTPELEKAIKTSESLQEVEDLYLPYKTRKKTKADMAREKGLEPLAEFLLSAKSRDDNFVQSFISEEKGIVSIEEALVGAK
DIIAEKISHNVEIRVFLRTLFSEKGIVKCLRGDAEDPKGIYRDYYEFSQPIKKIPSHRILAIFRGEREKVLKVTLSLPFD
PGSSLQKKLGISSSLAYFSELLEALKDSYERLLKPSIEREVRSDLKVSAEDRAIKVFAKNLRNLLLQPPMGEKVVMGIDP
GYRTGCKIAVVGKDSSVLYHDTIYPTPPRNDKKSAQMKVANAVRLLGVEIIAIGNGTASRETASFVAETIRTCNLNCKFM
IVSEAGASVYSASKTATEELPEYDVTTRGAISIARRVQDPLAEYVKIPPESIGVGMYQHDVSRKNLKKALDREVESVVNY
VGVNLNTASEHLLKYISGLNARMARNIVEYRKQVGLFKKREDLLKVKGIGNKAFEQAAGFCRIIDGEEPLDNTIVHPESY
HIAREVLKEVGILPEEIIRKREELRGKLEEFDIESFVKKAGFNPITVKEVVKALKNPGLDPRDELPKPILHDDVLSIEDL
RPDMELEGTVRNVVDFGAFVDIGVKQDGLIHKTRMGKNVCDPLEVLSVGQIVKVKVLSIDLERERIALELVEKRF
>Mature_715_residues
MIDFTVEIAKKLGLPTWKVKNSIELLEEGKTIPFIARYRKEKTGELNEIQIREIADMLEYLKKLETRKEEVLRLISEKGK
LTPELEKAIKTSESLQEVEDLYLPYKTRKKTKADMAREKGLEPLAEFLLSAKSRDDNFVQSFISEEKGIVSIEEALVGAK
DIIAEKISHNVEIRVFLRTLFSEKGIVKCLRGDAEDPKGIYRDYYEFSQPIKKIPSHRILAIFRGEREKVLKVTLSLPFD
PGSSLQKKLGISSSLAYFSELLEALKDSYERLLKPSIEREVRSDLKVSAEDRAIKVFAKNLRNLLLQPPMGEKVVMGIDP
GYRTGCKIAVVGKDSSVLYHDTIYPTPPRNDKKSAQMKVANAVRLLGVEIIAIGNGTASRETASFVAETIRTCNLNCKFM
IVSEAGASVYSASKTATEELPEYDVTTRGAISIARRVQDPLAEYVKIPPESIGVGMYQHDVSRKNLKKALDREVESVVNY
VGVNLNTASEHLLKYISGLNARMARNIVEYRKQVGLFKKREDLLKVKGIGNKAFEQAAGFCRIIDGEEPLDNTIVHPESY
HIAREVLKEVGILPEEIIRKREELRGKLEEFDIESFVKKAGFNPITVKEVVKALKNPGLDPRDELPKPILHDDVLSIEDL
RPDMELEGTVRNVVDFGAFVDIGVKQDGLIHKTRMGKNVCDPLEVLSVGQIVKVKVLSIDLERERIALELVEKRF

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=800, Percent_Identity=34.375, Blast_Score=405, Evalue=1e-113,
Organism=Homo sapiens, GI27597090, Length=499, Percent_Identity=23.0460921843687, Blast_Score=86, Evalue=2e-16,
Organism=Escherichia coli, GI87082262, Length=708, Percent_Identity=43.9265536723164, Blast_Score=535, Evalue=1e-153,
Organism=Escherichia coli, GI1787140, Length=75, Percent_Identity=48, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17511129, Length=717, Percent_Identity=31.7991631799163, Blast_Score=259, Evalue=3e-69,
Organism=Caenorhabditis elegans, GI17552892, Length=292, Percent_Identity=26.7123287671233, Blast_Score=73, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6321552, Length=225, Percent_Identity=27.5555555555556, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI62484314, Length=746, Percent_Identity=33.6461126005362, Blast_Score=376, Evalue=1e-104,
Organism=Drosophila melanogaster, GI24640080, Length=629, Percent_Identity=22.4165341812401, Blast_Score=77, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 80636; Mature: 80636

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDFTVEIAKKLGLPTWKVKNSIELLEEGKTIPFIARYRKEKTGELNEIQIREIADMLEY
CCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LKKLETRKEEVLRLISEKGKLTPELEKAIKTSESLQEVEDLYLPYKTRKKTKADMAREKG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
LEPLAEFLLSAKSRDDNFVQSFISEEKGIVSIEEALVGAKDIIAEKISHNVEIRVFLRTL
HHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEHHHHHHCHHHHHHHHHCCCCCHHHHHHHH
FSEKGIVKCLRGDAEDPKGIYRDYYEFSQPIKKIPSHRILAIFRGEREKVLKVTLSLPFD
HCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECCCC
PGSSLQKKLGISSSLAYFSELLEALKDSYERLLKPSIEREVRSDLKVSAEDRAIKVFAKN
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHH
LRNLLLQPPMGEKVVMGIDPGYRTGCKIAVVGKDSSVLYHDTIYPTPPRNDKKSAQMKVA
HHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHH
NAVRLLGVEIIAIGNGTASRETASFVAETIRTCNLNCKFMIVSEAGASVYSASKTATEEL
HHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHCCHHHHHHC
PEYDVTTRGAISIARRVQDPLAEYVKIPPESIGVGMYQHDVSRKNLKKALDREVESVVNY
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHH
VGVNLNTASEHLLKYISGLNARMARNIVEYRKQVGLFKKREDLLKVKGIGNKAFEQAAGF
HCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCE
CRIIDGEEPLDNTIVHPESYHIAREVLKEVGILPEEIIRKREELRGKLEEFDIESFVKKA
EEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
GFNPITVKEVVKALKNPGLDPRDELPKPILHDDVLSIEDLRPDMELEGTVRNVVDFGAFV
CCCCCCHHHHHHHHHCCCCCCHHHCCCCCHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHE
DIGVKQDGLIHKTRMGKNVCDPLEVLSVGQIVKVKVLSIDLERERIALELVEKRF
ECCCCCCCCEEHHHCCCCCCCHHHHHHCCCEEEEEEEEEECHHHHHHHHHHHHCC
>Mature Secondary Structure
MIDFTVEIAKKLGLPTWKVKNSIELLEEGKTIPFIARYRKEKTGELNEIQIREIADMLEY
CCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LKKLETRKEEVLRLISEKGKLTPELEKAIKTSESLQEVEDLYLPYKTRKKTKADMAREKG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
LEPLAEFLLSAKSRDDNFVQSFISEEKGIVSIEEALVGAKDIIAEKISHNVEIRVFLRTL
HHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEHHHHHHCHHHHHHHHHCCCCCHHHHHHHH
FSEKGIVKCLRGDAEDPKGIYRDYYEFSQPIKKIPSHRILAIFRGEREKVLKVTLSLPFD
HCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECCCC
PGSSLQKKLGISSSLAYFSELLEALKDSYERLLKPSIEREVRSDLKVSAEDRAIKVFAKN
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHH
LRNLLLQPPMGEKVVMGIDPGYRTGCKIAVVGKDSSVLYHDTIYPTPPRNDKKSAQMKVA
HHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHH
NAVRLLGVEIIAIGNGTASRETASFVAETIRTCNLNCKFMIVSEAGASVYSASKTATEEL
HHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHCCHHHHHHC
PEYDVTTRGAISIARRVQDPLAEYVKIPPESIGVGMYQHDVSRKNLKKALDREVESVVNY
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHH
VGVNLNTASEHLLKYISGLNARMARNIVEYRKQVGLFKKREDLLKVKGIGNKAFEQAAGF
HCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCE
CRIIDGEEPLDNTIVHPESYHIAREVLKEVGILPEEIIRKREELRGKLEEFDIESFVKKA
EEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
GFNPITVKEVVKALKNPGLDPRDELPKPILHDDVLSIEDLRPDMELEGTVRNVVDFGAFV
CCCCCCHHHHHHHHHCCCCCCHHHCCCCCHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHE
DIGVKQDGLIHKTRMGKNVCDPLEVLSVGQIVKVKVLSIDLERERIALELVEKRF
ECCCCCCCCEEHHHCCCCCCCHHHHHHCCCEEEEEEEEEECHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]