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The map label for this gene is yfbS [C]

Identifier: 238925427

GI number: 238925427

Start: 2946966

End: 2948231

Strand: Reverse

Name: yfbS [C]

Synonym: EUBREC_3082

Alternate gene names: 238925427

Gene position: 2948231-2946966 (Counterclockwise)

Preceding gene: 238925428

Following gene: 238925426

Centisome position: 85.46

GC content: 43.36

Gene sequence:

>1266_bases
ATGAGTCCAGCAACAATAACACTTTTATTCTTATTGTTTGCCGTTGTGATGTTCGTGTGGGAAAAGATTCCGCTTGGGGT
TACATCCATGATAGTATGCGTCGGTCTTGTTATCACAGGAGTACTGGATTGGAAAACAGCTTTTTCAGGATTTATTGACA
GCAATGTAATTCTTTTCGTAGCGATGTTTATCGTCGGAGGAGCATTGTTTGAAACCGGTATGGCAAACAAAATTGGAGGA
GTGGTCACACACTTCGCCAAAACAGAGAGGCAGCTTATCATAGCAATCATGGTGATTGTGGGACTGATGAGCGGAGTACT
TTCAAACACAGGAACTGCAGCAGTTCTCATTCCGGTAGTTATCGGAATTGCAGCAAAATCAGGATACTCGAGATCGAGAC
TTCTTATGCCACTTGTTTTTGCAGCAGCCATGGGTGGAAATTTATCTCTCATCGGTGCACCGGGAAATCTCATAGCACAA
TCAGCTATGGGAGAGATTGGACTTAGCTTTGGATTTTTCGAGTATGCAAAGGTAGGACTTCCGATACTTATAGCAGGTAT
TCTGTACTTTGCATTTATAGGATACAAATTCCTGCCTGAAAAGCAGGGCAGTACGGAAAGCTCATATGATGAGCAGAAGG
ATTTTTCAAATGTGCCTAAATGGAAACAGATGATGTCATTGATTATCTTAATCCTTACACTTTTGGGAATGATTTTCGAG
GACAAGATTGGTATAAAGCTTTGTGTCATCGGCTGTGTCGGAGCACTTGCCCTTATCATTACAGGCGTTATCAGTGAGAA
AAACGCACTTAAATCAATAGATTTGAAAACCATTTTCTTATTTGGTGGAACTCTTTCACTTGCAGCGGCGCTTCAGGAGA
CCGGGGCAGGCGAAGAAATCGCAACAGCGGTTATCGGTATACTTGGCAAAAATCCATCACCATACGTTCTCACATTCGTA
GTGTTCATGCTTTGCTGTGTACTTACGAACTTTATGTCAAATACCGCCACCACAGCACTTTTGGTTCCGATCTGCGTATC
AATTGCCACAGAGATTGGAGCTGACCCGAGTGCAGTACTTATGGCATGTGTTATCGGTGGTTCATGTGCATACGCCACAC
CTATCGGTATGCCTGCCAACACAATGGTCATTACAGCCGGAGGATACACCTTCAAGGATTATGCAAAGGCCGGTATTCCG
CTTATAGTAGTGGCGACCATTGTAAGTATGGTCTTACTGCCGATTTTCTATCCGTTCTTCCCATAA

Upstream 100 bases:

>100_bases
GTCAAAAAGGTATTGACGATTTCGGTTTTTTGTTATATCTTAAACTCAGAAATTGGATACAATATCAAATATCAAATATT
AAACGGAGGAGGAAAATGAT

Downstream 100 bases:

>100_bases
GAACGGATGGGAGTGGGTAAACAATAAATTAATATTTAATTATTTACAAGATTTATATTAGGAGGAAAAACTATGTCAAA
CGAGAAACAGGTAGAACAGC

Product: citrate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 420

Protein sequence:

>421_residues
MSPATITLLFLLFAVVMFVWEKIPLGVTSMIVCVGLVITGVLDWKTAFSGFIDSNVILFVAMFIVGGALFETGMANKIGG
VVTHFAKTERQLIIAIMVIVGLMSGVLSNTGTAAVLIPVVIGIAAKSGYSRSRLLMPLVFAAAMGGNLSLIGAPGNLIAQ
SAMGEIGLSFGFFEYAKVGLPILIAGILYFAFIGYKFLPEKQGSTESSYDEQKDFSNVPKWKQMMSLIILILTLLGMIFE
DKIGIKLCVIGCVGALALIITGVISEKNALKSIDLKTIFLFGGTLSLAAALQETGAGEEIATAVIGILGKNPSPYVLTFV
VFMLCCVLTNFMSNTATTALLVPICVSIATEIGADPSAVLMACVIGGSCAYATPIGMPANTMVITAGGYTFKDYAKAGIP
LIVVATIVSMVLLPIFYPFFP

Sequences:

>Translated_421_residues
MSPATITLLFLLFAVVMFVWEKIPLGVTSMIVCVGLVITGVLDWKTAFSGFIDSNVILFVAMFIVGGALFETGMANKIGG
VVTHFAKTERQLIIAIMVIVGLMSGVLSNTGTAAVLIPVVIGIAAKSGYSRSRLLMPLVFAAAMGGNLSLIGAPGNLIAQ
SAMGEIGLSFGFFEYAKVGLPILIAGILYFAFIGYKFLPEKQGSTESSYDEQKDFSNVPKWKQMMSLIILILTLLGMIFE
DKIGIKLCVIGCVGALALIITGVISEKNALKSIDLKTIFLFGGTLSLAAALQETGAGEEIATAVIGILGKNPSPYVLTFV
VFMLCCVLTNFMSNTATTALLVPICVSIATEIGADPSAVLMACVIGGSCAYATPIGMPANTMVITAGGYTFKDYAKAGIP
LIVVATIVSMVLLPIFYPFFP
>Mature_420_residues
SPATITLLFLLFAVVMFVWEKIPLGVTSMIVCVGLVITGVLDWKTAFSGFIDSNVILFVAMFIVGGALFETGMANKIGGV
VTHFAKTERQLIIAIMVIVGLMSGVLSNTGTAAVLIPVVIGIAAKSGYSRSRLLMPLVFAAAMGGNLSLIGAPGNLIAQS
AMGEIGLSFGFFEYAKVGLPILIAGILYFAFIGYKFLPEKQGSTESSYDEQKDFSNVPKWKQMMSLIILILTLLGMIFED
KIGIKLCVIGCVGALALIITGVISEKNALKSIDLKTIFLFGGTLSLAAALQETGAGEEIATAVIGILGKNPSPYVLTFVV
FMLCCVLTNFMSNTATTALLVPICVSIATEIGADPSAVLMACVIGGSCAYATPIGMPANTMVITAGGYTFKDYAKAGIPL
IVVATIVSMVLLPIFYPFFP

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Escherichia coli, GI1788629, Length=211, Percent_Identity=33.175355450237, Blast_Score=115, Evalue=8e-27,
Organism=Caenorhabditis elegans, GI32565804, Length=443, Percent_Identity=22.5733634311512, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71988385, Length=443, Percent_Identity=22.5733634311512, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24581759, Length=191, Percent_Identity=28.7958115183246, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI19920704, Length=191, Percent_Identity=28.7958115183246, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28574683, Length=191, Percent_Identity=28.7958115183246, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28574681, Length=191, Percent_Identity=28.7958115183246, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28574685, Length=191, Percent_Identity=28.7958115183246, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28574678, Length=191, Percent_Identity=28.7958115183246, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001898 [H]

Pfam domain/function: PF00939 Na_sulph_symp [H]

EC number: NA

Molecular weight: Translated: 44263; Mature: 44132

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPATITLLFLLFAVVMFVWEKIPLGVTSMIVCVGLVITGVLDWKTAFSGFIDSNVILFV
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
AMFIVGGALFETGMANKIGGVVTHFAKTERQLIIAIMVIVGLMSGVLSNTGTAAVLIPVV
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
IGIAAKSGYSRSRLLMPLVFAAAMGGNLSLIGAPGNLIAQSAMGEIGLSFGFFEYAKVGL
HHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCH
PILIAGILYFAFIGYKFLPEKQGSTESSYDEQKDFSNVPKWKQMMSLIILILTLLGMIFE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
DKIGIKLCVIGCVGALALIITGVISEKNALKSIDLKTIFLFGGTLSLAAALQETGAGEEI
CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCEEEEEECCHHHHHHHHHHCCCCHHH
ATAVIGILGKNPSPYVLTFVVFMLCCVLTNFMSNTATTALLVPICVSIATEIGADPSAVL
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
MACVIGGSCAYATPIGMPANTMVITAGGYTFKDYAKAGIPLIVVATIVSMVLLPIFYPFF
HHHHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
P
C
>Mature Secondary Structure 
SPATITLLFLLFAVVMFVWEKIPLGVTSMIVCVGLVITGVLDWKTAFSGFIDSNVILFV
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
AMFIVGGALFETGMANKIGGVVTHFAKTERQLIIAIMVIVGLMSGVLSNTGTAAVLIPVV
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
IGIAAKSGYSRSRLLMPLVFAAAMGGNLSLIGAPGNLIAQSAMGEIGLSFGFFEYAKVGL
HHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCH
PILIAGILYFAFIGYKFLPEKQGSTESSYDEQKDFSNVPKWKQMMSLIILILTLLGMIFE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
DKIGIKLCVIGCVGALALIITGVISEKNALKSIDLKTIFLFGGTLSLAAALQETGAGEEI
CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCEEEEEECCHHHHHHHHHHCCCCHHH
ATAVIGILGKNPSPYVLTFVVFMLCCVLTNFMSNTATTALLVPICVSIATEIGADPSAVL
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
MACVIGGSCAYATPIGMPANTMVITAGGYTFKDYAKAGIPLIVVATIVSMVLLPIFYPFF
HHHHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
P
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]