Click here to switch to the map view.

The map label for this gene is cdaR [H]

Identifier: 238921549

GI number: 238921549

Start: 3588068

End: 3589189

Strand: Reverse

Name: cdaR [H]

Synonym: NT01EI_3701

Alternate gene names: 238921549

Gene position: 3589189-3588068 (Counterclockwise)

Preceding gene: 238921550

Following gene: 238921548

Centisome position: 94.15

GC content: 63.28

Gene sequence:

>1122_bases
ATGGACGGCAGCGATCTCAGTGAAGCCGTGGCCCGACAGATAGTTCACCGGGCGATGGAGATTATCGGCCACTCGGTCAA
CGTGATGGATGCCCGCGGCGTGATCATCGCCTCTGGCGATACGGCCCGCCTGCATCAGCGTCATGAGGGGGCGGTGCTGG
TGCTGGCAGAAAATCGCCTCATTGAAATCGATGAGGCGGCGGCCCGTCAGCTGCGCGGCGTGCGCCCCGGGATCAATTTA
CCGATCACGTTCCACCGACGTCTGGTCGGCGTGGTGGGGATCTCCGGTGCGCCGGGCGAGGTGCGGGCCTATGGCGAGCT
GGTGCGTATGGCGGCAGAGCTGATTCTGGAGCAGGCGGCACTGCTGGAGCAGAGCCAGTGGGAGAAACGCTATCGCGAGA
CCTTGGTACAGCAGCTGATTGCCGACGAGCGCGATGAGGCTCAGCTGGCGGCGACGGCGGCCTATCTGGGCGTTGACGTC
GCGCAGCCGCGCATTGCGCTGCTGTTTACGCTGCAGGATGCCCACCATGAGACGCTGCGCGCTCTGCTGGAGGCCCTGAC
GGCGCTGCACCGCGAGGCGCTGATCGGGGTACAGGGCTTTGCCCAGCTGGTGATGCTGCTGCCCTGCGGCGACGGCGTGA
TGGAGAGCCCGGCGCTGCGCCGGACGGTGCGTCAGCTGACCCGCGGTATCGCGGCGCGTTTCGCGCTGCATATCTATGTC
GGGGGGGCGTTCTCCGGTACCGGTGCTGTCTGCCGCTCCTACCGCAGCGCGCAGGCACTGCAGGCGCTGGCGCGTCGCCA
TGCCCTGTCCGGGACGGTGATTTATTACCAGGATCATGTGCTGCCGACGCTGCTGGAGCATCTGGCCGGCAGCTGGCAGG
CGGATGAGTTGGGGCAGGTGTGGCGGCGGCTACAGCATCAGGATAGCCGCGGGGTGCTGTGCCGTACCCTACGGACATTT
TTTGCTCAGAACTGTGAGCTGTCTCAAACCTCAAAACTGCTGCACATTCACGTCAATACCCTGCGCTATCGTCTGCAGCG
GATCTCTGATATTACTAATTTAAATATCAACCAGTTACAGAGCGTCATTCAGCTTTATCTCGGTATGCAGCTGCACGGCT
AA

Upstream 100 bases:

>100_bases
CCTGAGCGCGGTAACGGCAGGATAAGGGGCGATGCGACGGCATCGCCTTTTTTGTGTCCGAACGTCGGCATCGCCGCGCC
GGGCGTACGATGGAGGATGT

Downstream 100 bases:

>100_bases
TTTGGTCTTTCCTACAAAAACGGCGCCGATCCACGGCGCGTTTTCTGTCCGTTTCCCCCAAGCTTTTCCCCGCCTATTTT
TCATAATGGCTCGGCATCGA

Product: carbohydrate diacid regulator

Products: NA

Alternate protein names: Sugar diacid regulator [H]

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MDGSDLSEAVARQIVHRAMEIIGHSVNVMDARGVIIASGDTARLHQRHEGAVLVLAENRLIEIDEAAARQLRGVRPGINL
PITFHRRLVGVVGISGAPGEVRAYGELVRMAAELILEQAALLEQSQWEKRYRETLVQQLIADERDEAQLAATAAYLGVDV
AQPRIALLFTLQDAHHETLRALLEALTALHREALIGVQGFAQLVMLLPCGDGVMESPALRRTVRQLTRGIAARFALHIYV
GGAFSGTGAVCRSYRSAQALQALARRHALSGTVIYYQDHVLPTLLEHLAGSWQADELGQVWRRLQHQDSRGVLCRTLRTF
FAQNCELSQTSKLLHIHVNTLRYRLQRISDITNLNINQLQSVIQLYLGMQLHG

Sequences:

>Translated_373_residues
MDGSDLSEAVARQIVHRAMEIIGHSVNVMDARGVIIASGDTARLHQRHEGAVLVLAENRLIEIDEAAARQLRGVRPGINL
PITFHRRLVGVVGISGAPGEVRAYGELVRMAAELILEQAALLEQSQWEKRYRETLVQQLIADERDEAQLAATAAYLGVDV
AQPRIALLFTLQDAHHETLRALLEALTALHREALIGVQGFAQLVMLLPCGDGVMESPALRRTVRQLTRGIAARFALHIYV
GGAFSGTGAVCRSYRSAQALQALARRHALSGTVIYYQDHVLPTLLEHLAGSWQADELGQVWRRLQHQDSRGVLCRTLRTF
FAQNCELSQTSKLLHIHVNTLRYRLQRISDITNLNINQLQSVIQLYLGMQLHG
>Mature_373_residues
MDGSDLSEAVARQIVHRAMEIIGHSVNVMDARGVIIASGDTARLHQRHEGAVLVLAENRLIEIDEAAARQLRGVRPGINL
PITFHRRLVGVVGISGAPGEVRAYGELVRMAAELILEQAALLEQSQWEKRYRETLVQQLIADERDEAQLAATAAYLGVDV
AQPRIALLFTLQDAHHETLRALLEALTALHREALIGVQGFAQLVMLLPCGDGVMESPALRRTVRQLTRGIAARFALHIYV
GGAFSGTGAVCRSYRSAQALQALARRHALSGTVIYYQDHVLPTLLEHLAGSWQADELGQVWRRLQHQDSRGVLCRTLRTF
FAQNCELSQTSKLLHIHVNTLRYRLQRISDITNLNINQLQSVIQLYLGMQLHG

Specific function: Seems to regulate the expression of the operons for the enzymes involved in D-galactarate, D-glucarate and D-glycerate utilization [H]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=381, Percent_Identity=39.3700787401575, Blast_Score=265, Evalue=3e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 41370; Mature: 41370

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGSDLSEAVARQIVHRAMEIIGHSVNVMDARGVIIASGDTARLHQRHEGAVLVLAENRL
CCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCHHHHHHCCCCEEEEEECCCE
IEIDEAAARQLRGVRPGINLPITFHRRLVGVVGISGAPGEVRAYGELVRMAAELILEQAA
EECCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LLEQSQWEKRYRETLVQQLIADERDEAQLAATAAYLGVDVAQPRIALLFTLQDAHHETLR
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHH
ALLEALTALHREALIGVQGFAQLVMLLPCGDGVMESPALRRTVRQLTRGIAARFALHIYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEE
GGAFSGTGAVCRSYRSAQALQALARRHALSGTVIYYQDHVLPTLLEHLAGSWQADELGQV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCHHHHHHH
WRRLQHQDSRGVLCRTLRTFFAQNCELSQTSKLLHIHVNTLRYRLQRISDITNLNINQLQ
HHHHHCCCCCHHHHHHHHHHHHCCCCCHHHCCEEEEHHHHHHHHHHHHHHHCCCCHHHHH
SVIQLYLGMQLHG
HHHHHHHCCCCCC
>Mature Secondary Structure
MDGSDLSEAVARQIVHRAMEIIGHSVNVMDARGVIIASGDTARLHQRHEGAVLVLAENRL
CCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCHHHHHHCCCCEEEEEECCCE
IEIDEAAARQLRGVRPGINLPITFHRRLVGVVGISGAPGEVRAYGELVRMAAELILEQAA
EECCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LLEQSQWEKRYRETLVQQLIADERDEAQLAATAAYLGVDVAQPRIALLFTLQDAHHETLR
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHH
ALLEALTALHREALIGVQGFAQLVMLLPCGDGVMESPALRRTVRQLTRGIAARFALHIYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEE
GGAFSGTGAVCRSYRSAQALQALARRHALSGTVIYYQDHVLPTLLEHLAGSWQADELGQV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCHHHHHHH
WRRLQHQDSRGVLCRTLRTFFAQNCELSQTSKLLHIHVNTLRYRLQRISDITNLNINQLQ
HHHHHCCCCCHHHHHHHHHHHHCCCCCHHHCCEEEEHHHHHHHHHHHHHHHCCCCHHHHH
SVIQLYLGMQLHG
HHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503; 10762278 [H]