Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
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Accession | NC_012779 |
Length | 3,812,315 |
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The map label for this gene is 238921547
Identifier: 238921547
GI number: 238921547
Start: 3586629
End: 3587585
Strand: Reverse
Name: 238921547
Synonym: NT01EI_3699
Alternate gene names: NA
Gene position: 3587585-3586629 (Counterclockwise)
Preceding gene: 238921548
Following gene: 238921546
Centisome position: 94.11
GC content: 65.31
Gene sequence:
>957_bases GTGGCTACGCTGCTGCTGACCGCCGTCGGCGTCTTTGTCGATGTGGCGGTGATCACCGTGTCGCCGATTGCCCTGGCTAT CGCTCACCGGGCCGACATCTCTAAAATGGCCATTCTGCTGGCGATGGTCGGCGGTGGTAAGGCGGGAAATGTCATGTCGC CAAACCCCAACACCATCGCCGCAGCGGAGGCGTTCAACGTGCCGCTGACCTCCCTGATGTTGGCCGGTATCGTGCCCGGA CTGTTCGGCCTGGCTCTGGCTTACCTGCTGGCGCGGCGCCTGCGCGGGCACGGGAGTAAGGTTCAGGCCCATGAGCTGGT GGCCGCCGATCACGCCAGCCAGCCCGGCTTTATGGCCGCGCTGACCGCGCCGCTGGTGGCCATTGTGCTGCTGGCCCTGC GCCCCGTCGCGGGCATCGCCATCGATCCCCTGCTGGCCTTGCCGCTGGGGGGGCTGATCGGACTGCTGGCCATGGGGCAG TGGCGTCACGCCAACCGCTACATGGTCTCCGGGCTATCGCGCATGGCGCCGGTCGCAATTATGCTGCTGGGGACCGGTAC GCTGGCCGGCATCATCGCTAACTCCGGATTGAAAACGGTGCTGATCGACGGCTTGGGCGTATCCGGTTTGCCCTCTTATC TGCTGGCGCCGGTCTCCGGCGCGCTGATGTCGATGGCCACCGCGTCTACGACGGCGGGCACCGCCGTGGCCTCCGCCGTC TTTAGCGCCACCCTGCTGGAGATGGGGATCACGGCGCTGGCCGGGGCGGCGATGATCCATGCCGGTGCGACCGTATTTGA TCACATGCCGCACGGCAGCTTCTTTCATGCCACCGGCGGCAGCGTCAATATGCAGGTGCATGAGCGCCTGAAGCTGATCC CTTATGAAACCGCGGTCGGTCTGATGATCGCGCTGATTTCCACGCTGATGTTCGGCGTATTCCACCTGGCGGGTTAA
Upstream 100 bases:
>100_bases TTCTCGGCGCGGGGTACTGATTGAGTCCGGCGCCGCCAGCGCCATCGCCGAGACGATCGTACGCCGCGTCGGCGAGGGGC GGGCGCTGCTGGCGCTGGCG
Downstream 100 bases:
>100_bases CGGAGAAGAGAGAGTATGAAAGTTGTGATCGCCCCCGATTCGTTTAAGGAGAGCCTGAGCGCCATGCAGGTGGCACAGGC GATTGAGCAGGGGTTTCGTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 318; Mature: 317
Protein sequence:
>318_residues MATLLLTAVGVFVDVAVITVSPIALAIAHRADISKMAILLAMVGGGKAGNVMSPNPNTIAAAEAFNVPLTSLMLAGIVPG LFGLALAYLLARRLRGHGSKVQAHELVAADHASQPGFMAALTAPLVAIVLLALRPVAGIAIDPLLALPLGGLIGLLAMGQ WRHANRYMVSGLSRMAPVAIMLLGTGTLAGIIANSGLKTVLIDGLGVSGLPSYLLAPVSGALMSMATASTTAGTAVASAV FSATLLEMGITALAGAAMIHAGATVFDHMPHGSFFHATGGSVNMQVHERLKLIPYETAVGLMIALISTLMFGVFHLAG
Sequences:
>Translated_318_residues MATLLLTAVGVFVDVAVITVSPIALAIAHRADISKMAILLAMVGGGKAGNVMSPNPNTIAAAEAFNVPLTSLMLAGIVPG LFGLALAYLLARRLRGHGSKVQAHELVAADHASQPGFMAALTAPLVAIVLLALRPVAGIAIDPLLALPLGGLIGLLAMGQ WRHANRYMVSGLSRMAPVAIMLLGTGTLAGIIANSGLKTVLIDGLGVSGLPSYLLAPVSGALMSMATASTTAGTAVASAV FSATLLEMGITALAGAAMIHAGATVFDHMPHGSFFHATGGSVNMQVHERLKLIPYETAVGLMIALISTLMFGVFHLAG >Mature_317_residues ATLLLTAVGVFVDVAVITVSPIALAIAHRADISKMAILLAMVGGGKAGNVMSPNPNTIAAAEAFNVPLTSLMLAGIVPGL FGLALAYLLARRLRGHGSKVQAHELVAADHASQPGFMAALTAPLVAIVLLALRPVAGIAIDPLLALPLGGLIGLLAMGQW RHANRYMVSGLSRMAPVAIMLLGTGTLAGIIANSGLKTVLIDGLGVSGLPSYLLAPVSGALMSMATASTTAGTAVASAVF SATLLEMGITALAGAAMIHAGATVFDHMPHGSFFHATGGSVNMQVHERLKLIPYETAVGLMIALISTLMFGVFHLAG
Specific function: Unknown
COG id: COG2610
COG function: function code GE; H+/gluconate symporter and related permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003474 [H]
Pfam domain/function: PF02447 GntP_permease [H]
EC number: NA
Molecular weight: Translated: 32203; Mature: 32072
Theoretical pI: Translated: 9.88; Mature: 9.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.7 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.4 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATLLLTAVGVFVDVAVITVSPIALAIAHRADISKMAILLAMVGGGKAGNVMSPNPNTIA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE AAEAFNVPLTSLMLAGIVPGLFGLALAYLLARRLRGHGSKVQAHELVAADHASQPGFMAA EHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHH LTAPLVAIVLLALRPVAGIAIDPLLALPLGGLIGLLAMGQWRHANRYMVSGLSRMAPVAI HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH MLLGTGTLAGIIANSGLKTVLIDGLGVSGLPSYLLAPVSGALMSMATASTTAGTAVASAV HHHCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH FSATLLEMGITALAGAAMIHAGATVFDHMPHGSFFHATGGSVNMQVHERLKLIPYETAVG HHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEECCCCEEEHHHHHHHHHCCHHHHHH LMIALISTLMFGVFHLAG HHHHHHHHHHHHHHHHCC >Mature Secondary Structure ATLLLTAVGVFVDVAVITVSPIALAIAHRADISKMAILLAMVGGGKAGNVMSPNPNTIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE AAEAFNVPLTSLMLAGIVPGLFGLALAYLLARRLRGHGSKVQAHELVAADHASQPGFMAA EHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHH LTAPLVAIVLLALRPVAGIAIDPLLALPLGGLIGLLAMGQWRHANRYMVSGLSRMAPVAI HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH MLLGTGTLAGIIANSGLKTVLIDGLGVSGLPSYLLAPVSGALMSMATASTTAGTAVASAV HHHCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH FSATLLEMGITALAGAAMIHAGATVFDHMPHGSFFHATGGSVNMQVHERLKLIPYETAVG HHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEECCCCEEEHHHHHHHHHCCHHHHHH LMIALISTLMFGVFHLAG HHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]