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The map label for this gene is smpA [H]

Identifier: 238920937

GI number: 238920937

Start: 2960595

End: 2960945

Strand: Direct

Name: smpA [H]

Synonym: NT01EI_3065

Alternate gene names: 238920937

Gene position: 2960595-2960945 (Clockwise)

Preceding gene: 238920936

Following gene: 238920940

Centisome position: 77.66

GC content: 55.56

Gene sequence:

>351_bases
ATGCGTTGTAAAATGCTGACTGCCGCTGCCGTGGTCTTGGTTATGCTAACCGCAGGCTGCGCCACCGTGGAAAAAGTGGT
TTACCGCCCTGATATCAACCAGGGCAATTATCTGACGGCGACCGACGTTGCCAAAATCCACCGTGGCATGACGCAACAGC
AGGTCGCCTATACCCTGGGTACCCCACTGTTACAGGATCCCTTCGGCAGCAGCACATGGTACTACGTATTCCGCCAGGAG
CCGAGCCACGAGGGGATAACCCAGCAGACCCTGACCCTGACCTTTAACGCTAGCGGTGTGCTGACCAACATTGAAAACAC
CAAGAAACTGCCGGATGGCAGCAACGCATAA

Upstream 100 bases:

>100_bases
CCGTCGGCGTGGTAATCTCGACGCCCAGAAGATCCTGCACCAAGATGCAGAGTCGTGCCGCAGCTACCCTGGCTTTGTGT
CCAAAAGGAATGAATTAACT

Downstream 100 bases:

>100_bases
GTATTAACGGCAGTAAAAATAAGGCGCCCATAGCGCCTTATTTTTTTGCCCGCTCAGCGCGCTGGCGCCGCAACTCACGC
GGATCGGCGATCAGAGGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MRCKMLTAAAVVLVMLTAGCATVEKVVYRPDINQGNYLTATDVAKIHRGMTQQQVAYTLGTPLLQDPFGSSTWYYVFRQE
PSHEGITQQTLTLTFNASGVLTNIENTKKLPDGSNA

Sequences:

>Translated_116_residues
MRCKMLTAAAVVLVMLTAGCATVEKVVYRPDINQGNYLTATDVAKIHRGMTQQQVAYTLGTPLLQDPFGSSTWYYVFRQE
PSHEGITQQTLTLTFNASGVLTNIENTKKLPDGSNA
>Mature_116_residues
MRCKMLTAAAVVLVMLTAGCATVEKVVYRPDINQGNYLTATDVAKIHRGMTQQQVAYTLGTPLLQDPFGSSTWYYVFRQE
PSHEGITQQTLTLTFNASGVLTNIENTKKLPDGSNA

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=110, Percent_Identity=78.1818181818182, Blast_Score=189, Evalue=3e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 12713; Mature: 12713

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00018 EF_HAND_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCKMLTAAAVVLVMLTAGCATVEKVVYRPDINQGNYLTATDVAKIHRGMTQQQVAYTLG
CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEECHHHHHHHHCCCCHHHHHHHHC
TPLLQDPFGSSTWYYVFRQEPSHEGITQQTLTLTFNASGVLTNIENTKKLPDGSNA
CCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEEECCEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MRCKMLTAAAVVLVMLTAGCATVEKVVYRPDINQGNYLTATDVAKIHRGMTQQQVAYTLG
CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEECHHHHHHHHCCCCHHHHHHHHC
TPLLQDPFGSSTWYYVFRQEPSHEGITQQTLTLTFNASGVLTNIENTKKLPDGSNA
CCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEEECCEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]