| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is ybbO [H]
Identifier: 238920889
GI number: 238920889
Start: 2902941
End: 2903726
Strand: Direct
Name: ybbO [H]
Synonym: NT01EI_3016
Alternate gene names: 238920889
Gene position: 2902941-2903726 (Clockwise)
Preceding gene: 238920888
Following gene: 238920890
Centisome position: 76.15
GC content: 68.07
Gene sequence:
>786_bases ATGCAAAAAGCCATCTTAATCACCGGCTGTTCCAGCGGCATCGGACTGGCGGCGGCCAAGGATCTGCACCAGCGGGGCTA CCGGGTGCTGGCCGCCTGCCGTAAAGCGGAGGACGTCGCGGCGATGGAGGCCATGGGGATGGAGGGCATCACGCTGGATC TCGACAGCGCCGACAGCGTAGAGCAGGCCGCCCGTCGGGTGCTGGCGCTGACCGGCGGGCGTCTGTATGCCCTGTTCAAT AACGGCGGCTTCGGTCTCTATGGGCCCCTCAGCCAGATCAGCCGCGAGGGGCTGGAGCGCCAGTTTGCCACCAACCTGTT CGGCACCCATCAGCTGACCCGGCTGCTGCTGCCGGCGATGCTGGCCCAGGGCGAGGGGCGCATCATCCAGACCAGCTCCA TCATGGGTATCGTGGCAACCCCCGGACGCGGCGCCTATGCCGCCAGCAAGTATGCGCTGGAGGGCTGGTCGGATGCGCTG CGCATGGAGCTGCGTGGCAGCGGGGTACACGTCTCCCTGATCGAGCCCGGCCCCATCCGCTCGCGCTTTACCCACAACGT GCACCAGTGCGACAGCACCAGGCCGGTGACCAACCCCGGCATCGCCGCCCGCTTCACCCTGACCCCGGAGGCGGTGCTGC CCAAGTTGCGCCACGCGCTGGAGAGTCCGCGTCCGCGCCTGCGCTATCCGGTCACCGTCATCGCTCATGTGCTCAGCCTG CTGCGGCGGATCCTGCCGGGCCGCGCGCTGGATCGCATTCTGAGTGGCCACTCGACGGCACACTGA
Upstream 100 bases:
>100_bases GCAGCGCCTGCTGCCGCAGCTAACGCGCGCGGAGGACGGCGCGCCGTCTATTAATTAAACATGAATATTCAGCGACTAAC AGGGCAACTTAGGTAAACTT
Downstream 100 bases:
>100_bases CCTTGTAATTGCCGCCACCGCCCCCATATCCGTTTTATCTAGCCGAAGGGATCGAGAGAAATCACCATGATCAACGCCAC CGTAGTCAATATTACCGAAG
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 261; Mature: 261
Protein sequence:
>261_residues MQKAILITGCSSGIGLAAAKDLHQRGYRVLAACRKAEDVAAMEAMGMEGITLDLDSADSVEQAARRVLALTGGRLYALFN NGGFGLYGPLSQISREGLERQFATNLFGTHQLTRLLLPAMLAQGEGRIIQTSSIMGIVATPGRGAYAASKYALEGWSDAL RMELRGSGVHVSLIEPGPIRSRFTHNVHQCDSTRPVTNPGIAARFTLTPEAVLPKLRHALESPRPRLRYPVTVIAHVLSL LRRILPGRALDRILSGHSTAH
Sequences:
>Translated_261_residues MQKAILITGCSSGIGLAAAKDLHQRGYRVLAACRKAEDVAAMEAMGMEGITLDLDSADSVEQAARRVLALTGGRLYALFN NGGFGLYGPLSQISREGLERQFATNLFGTHQLTRLLLPAMLAQGEGRIIQTSSIMGIVATPGRGAYAASKYALEGWSDAL RMELRGSGVHVSLIEPGPIRSRFTHNVHQCDSTRPVTNPGIAARFTLTPEAVLPKLRHALESPRPRLRYPVTVIAHVLSL LRRILPGRALDRILSGHSTAH >Mature_261_residues MQKAILITGCSSGIGLAAAKDLHQRGYRVLAACRKAEDVAAMEAMGMEGITLDLDSADSVEQAARRVLALTGGRLYALFN NGGFGLYGPLSQISREGLERQFATNLFGTHQLTRLLLPAMLAQGEGRIIQTSSIMGIVATPGRGAYAASKYALEGWSDAL RMELRGSGVHVSLIEPGPIRSRFTHNVHQCDSTRPVTNPGIAARFTLTPEAVLPKLRHALESPRPRLRYPVTVIAHVLSL LRRILPGRALDRILSGHSTAH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7657478, Length=191, Percent_Identity=38.7434554973822, Blast_Score=119, Evalue=3e-27, Organism=Homo sapiens, GI150247226, Length=280, Percent_Identity=32.1428571428571, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI40548397, Length=191, Percent_Identity=36.1256544502618, Blast_Score=115, Evalue=3e-26, Organism=Homo sapiens, GI214010158, Length=191, Percent_Identity=36.1256544502618, Blast_Score=115, Evalue=3e-26, Organism=Homo sapiens, GI214010156, Length=191, Percent_Identity=36.1256544502618, Blast_Score=115, Evalue=3e-26, Organism=Homo sapiens, GI22758144, Length=191, Percent_Identity=36.1256544502618, Blast_Score=115, Evalue=3e-26, Organism=Homo sapiens, GI22507405, Length=283, Percent_Identity=31.8021201413428, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI19743808, Length=283, Percent_Identity=31.095406360424, Blast_Score=113, Evalue=2e-25, Organism=Homo sapiens, GI223718074, Length=265, Percent_Identity=33.5849056603774, Blast_Score=112, Evalue=5e-25, Organism=Homo sapiens, GI50726952, Length=282, Percent_Identity=32.6241134751773, Blast_Score=111, Evalue=6e-25, Organism=Homo sapiens, GI44680136, Length=186, Percent_Identity=33.8709677419355, Blast_Score=108, Evalue=6e-24, Organism=Homo sapiens, GI44680133, Length=186, Percent_Identity=33.8709677419355, Blast_Score=108, Evalue=6e-24, Organism=Homo sapiens, GI17738292, Length=186, Percent_Identity=33.8709677419355, Blast_Score=108, Evalue=6e-24, Organism=Homo sapiens, GI20149619, Length=202, Percent_Identity=30.6930693069307, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI7706318, Length=208, Percent_Identity=31.7307692307692, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI157739938, Length=191, Percent_Identity=30.8900523560209, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI119392083, Length=199, Percent_Identity=33.1658291457286, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI142976729, Length=255, Percent_Identity=27.0588235294118, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI32483357, Length=189, Percent_Identity=26.4550264550265, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI7705925, Length=175, Percent_Identity=28, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI40254992, Length=191, Percent_Identity=29.3193717277487, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI4504503, Length=185, Percent_Identity=30.2702702702703, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI5031737, Length=197, Percent_Identity=28.9340101522843, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=29.1666666666667, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI4504505, Length=228, Percent_Identity=29.3859649122807, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI126723191, Length=179, Percent_Identity=25.6983240223464, Blast_Score=65, Evalue=9e-11, Organism=Escherichia coli, GI1786701, Length=256, Percent_Identity=64.0625, Blast_Score=355, Evalue=1e-99, Organism=Escherichia coli, GI87082100, Length=237, Percent_Identity=29.1139240506329, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1787335, Length=185, Percent_Identity=31.3513513513514, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1786812, Length=208, Percent_Identity=29.3269230769231, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787820, Length=218, Percent_Identity=27.9816513761468, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1788459, Length=216, Percent_Identity=26.8518518518519, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1789378, Length=185, Percent_Identity=31.3513513513514, Blast_Score=62, Evalue=6e-11, Organism=Caenorhabditis elegans, GI115534660, Length=282, Percent_Identity=27.6595744680851, Blast_Score=103, Evalue=7e-23, Organism=Caenorhabditis elegans, GI17557780, Length=290, Percent_Identity=28.2758620689655, Blast_Score=94, Evalue=5e-20, Organism=Caenorhabditis elegans, GI71997402, Length=190, Percent_Identity=34.2105263157895, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17507613, Length=293, Percent_Identity=25.2559726962457, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI32563809, Length=293, Percent_Identity=25.2559726962457, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17570069, Length=192, Percent_Identity=31.7708333333333, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI193210355, Length=288, Percent_Identity=27.4305555555556, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17561402, Length=191, Percent_Identity=28.2722513089005, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17567345, Length=174, Percent_Identity=27.5862068965517, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17560676, Length=205, Percent_Identity=28.2926829268293, Blast_Score=69, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=28.7179487179487, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6322067, Length=175, Percent_Identity=30.2857142857143, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6322861, Length=204, Percent_Identity=29.9019607843137, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI21358495, Length=197, Percent_Identity=32.994923857868, Blast_Score=110, Evalue=6e-25, Organism=Drosophila melanogaster, GI24651139, Length=189, Percent_Identity=35.978835978836, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI21356301, Length=202, Percent_Identity=29.2079207920792, Blast_Score=85, Evalue=6e-17, Organism=Drosophila melanogaster, GI28571526, Length=186, Percent_Identity=34.4086021505376, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI21357041, Length=185, Percent_Identity=31.3513513513514, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24643142, Length=184, Percent_Identity=28.2608695652174, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI45553409, Length=205, Percent_Identity=31.219512195122, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24647948, Length=205, Percent_Identity=31.219512195122, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24647946, Length=205, Percent_Identity=31.219512195122, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI23397609, Length=195, Percent_Identity=30.7692307692308, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI24644339, Length=181, Percent_Identity=32.5966850828729, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24640442, Length=196, Percent_Identity=28.0612244897959, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24580925, Length=194, Percent_Identity=29.8969072164948, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI19922066, Length=185, Percent_Identity=28.1081081081081, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI21355319, Length=197, Percent_Identity=26.3959390862944, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24581726, Length=211, Percent_Identity=23.696682464455, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 28135; Mature: 28135
Theoretical pI: Translated: 10.47; Mature: 10.47
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKAILITGCSSGIGLAAAKDLHQRGYRVLAACRKAEDVAAMEAMGMEGITLDLDSADSV CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHH EQAARRVLALTGGRLYALFNNGGFGLYGPLSQISREGLERQFATNLFGTHQLTRLLLPAM HHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAQGEGRIIQTSSIMGIVATPGRGAYAASKYALEGWSDALRMELRGSGVHVSLIEPGPIR HHCCCCCEEEECCEEEEEECCCCCCHHHHHHHHCCHHHHHHHEECCCCEEEEEECCCCCH SRFTHNVHQCDSTRPVTNPGIAARFTLTPEAVLPKLRHALESPRPRLRYPVTVIAHVLSL HHHHCCHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH LRRILPGRALDRILSGHSTAH HHHHCCCHHHHHHHCCCCCCC >Mature Secondary Structure MQKAILITGCSSGIGLAAAKDLHQRGYRVLAACRKAEDVAAMEAMGMEGITLDLDSADSV CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHH EQAARRVLALTGGRLYALFNNGGFGLYGPLSQISREGLERQFATNLFGTHQLTRLLLPAM HHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAQGEGRIIQTSSIMGIVATPGRGAYAASKYALEGWSDALRMELRGSGVHVSLIEPGPIR HHCCCCCEEEECCEEEEEECCCCCCHHHHHHHHCCHHHHHHHEECCCCEEEEEECCCCCH SRFTHNVHQCDSTRPVTNPGIAARFTLTPEAVLPKLRHALESPRPRLRYPVTVIAHVLSL HHHHCCHHHCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH LRRILPGRALDRILSGHSTAH HHHHCCCHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]