Click here to switch to the map view.

The map label for this gene is ybbN [H]

Identifier: 238920890

GI number: 238920890

Start: 2903793

End: 2904647

Strand: Direct

Name: ybbN [H]

Synonym: NT01EI_3017

Alternate gene names: 238920890

Gene position: 2903793-2904647 (Clockwise)

Preceding gene: 238920889

Following gene: 238920891

Centisome position: 76.17

GC content: 63.74

Gene sequence:

>855_bases
ATGATCAACGCCACCGTAGTCAATATTACCGAAGCCAACCTGCACCAGACGCTGGAGCAATCCATGTCGGTGCCGGTGCT
GTTTTACTTTTGGTCTGCCCGCAGCCAACACTGTGAACAGCTCACGCCGGTGCTGGAAAAGCTGGCCACCGAGTACGCCG
GGCAGTTCATCCTGGCCAAGGTCGACTGCGACGCCGAACAGATGCTGGCATCCCAGTTCGGGCTGCGCGCCATCCCGACG
GTCTATCTGTTTAAGGATGGTCAGCCGCTCGATGGTTTTCAGGGACCGCAGCCGGAAGAGCAGATCCGCGATCTGTTGGC
CCGGGTTCTGCCCAAGCCAGAAGAGCTAAAGGCCGCCCAGGCAGCGGAGCTGATGGCCGCCGGCAATATGGCGGAGGCCC
TGCCGCTGCTGAAAGAGGCCCACGCCCTGGCGCCGACCCGCAGTGATATCACGCTGGCGCTGGCCGAAACCCTGATCGCC
CTGAACCGCAGCGACGAGGCCAGCACCCTGCTGACCACCGTTCCGCTGCAGGATCAGGACACCCACTACCAGAGCCTGAT
CGCCCAGATCGAGCTGATGAAGCAGGCCGCCGACACCCCGGAAATCCAGCAGCTGCAGCTGCAGGTCGCCGAACAGCCAC
AGAACGTGGCGCTGGCCGTCCAGCTGGCCCTACAGCTGCATCAGGTCGGACGCAACGAAGAGGCGCTGACCCTGCTGATG
GATCACCTGCGTCACGATCTGGCCGCCGGTGACGGTGCAGCCCGCAAGACGCTGATGGACATTCTGGCCGCCCTGGGCAC
CGGCGACGCGCTGGCCGCTAAGTTCCGCCGCCAGCTCTACTCCCTGATGTACTGA

Upstream 100 bases:

>100_bases
TCGCATTCTGAGTGGCCACTCGACGGCACACTGACCTTGTAATTGCCGCCACCGCCCCCATATCCGTTTTATCTAGCCGA
AGGGATCGAGAGAAATCACC

Downstream 100 bases:

>100_bases
TCGCCGCGCTCGGCACCTCCCCGCAATCCCTGCCCGCTGACGCCGACAGGGATTTTTTATGGCCGTCACCCGTGCACAGG
CTCCCGGTAACATTTCCGCT

Product: thioredoxin domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MINATVVNITEANLHQTLEQSMSVPVLFYFWSARSQHCEQLTPVLEKLATEYAGQFILAKVDCDAEQMLASQFGLRAIPT
VYLFKDGQPLDGFQGPQPEEQIRDLLARVLPKPEELKAAQAAELMAAGNMAEALPLLKEAHALAPTRSDITLALAETLIA
LNRSDEASTLLTTVPLQDQDTHYQSLIAQIELMKQAADTPEIQQLQLQVAEQPQNVALAVQLALQLHQVGRNEEALTLLM
DHLRHDLAAGDGAARKTLMDILAALGTGDALAAKFRRQLYSLMY

Sequences:

>Translated_284_residues
MINATVVNITEANLHQTLEQSMSVPVLFYFWSARSQHCEQLTPVLEKLATEYAGQFILAKVDCDAEQMLASQFGLRAIPT
VYLFKDGQPLDGFQGPQPEEQIRDLLARVLPKPEELKAAQAAELMAAGNMAEALPLLKEAHALAPTRSDITLALAETLIA
LNRSDEASTLLTTVPLQDQDTHYQSLIAQIELMKQAADTPEIQQLQLQVAEQPQNVALAVQLALQLHQVGRNEEALTLLM
DHLRHDLAAGDGAARKTLMDILAALGTGDALAAKFRRQLYSLMY
>Mature_284_residues
MINATVVNITEANLHQTLEQSMSVPVLFYFWSARSQHCEQLTPVLEKLATEYAGQFILAKVDCDAEQMLASQFGLRAIPT
VYLFKDGQPLDGFQGPQPEEQIRDLLARVLPKPEELKAAQAAELMAAGNMAEALPLLKEAHALAPTRSDITLALAETLIA
LNRSDEASTLLTTVPLQDQDTHYQSLIAQIELMKQAADTPEIQQLQLQVAEQPQNVALAVQLALQLHQVGRNEEALTLLM
DHLRHDLAAGDGAARKTLMDILAALGTGDALAAKFRRQLYSLMY

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Escherichia coli, GI87081747, Length=280, Percent_Identity=71.7857142857143, Blast_Score=414, Evalue=1e-117,
Organism=Escherichia coli, GI1788936, Length=99, Percent_Identity=34.3434343434343, Blast_Score=76, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI212646193, Length=109, Percent_Identity=34.8623853211009, Blast_Score=67, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 31203; Mature: 31203

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINATVVNITEANLHQTLEQSMSVPVLFYFWSARSQHCEQLTPVLEKLATEYAGQFILAK
CCCEEEEEEEHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
VDCDAEQMLASQFGLRAIPTVYLFKDGQPLDGFQGPQPEEQIRDLLARVLPKPEELKAAQ
ECCCHHHHHHHHCCCHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
AAELMAAGNMAEALPLLKEAHALAPTRSDITLALAETLIALNRSDEASTLLTTVPLQDQD
HHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHEEEECCCCCCC
THYQSLIAQIELMKQAADTPEIQQLQLQVAEQPQNVALAVQLALQLHQVGRNEEALTLLM
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
DHLRHDLAAGDGAARKTLMDILAALGTGDALAAKFRRQLYSLMY
HHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MINATVVNITEANLHQTLEQSMSVPVLFYFWSARSQHCEQLTPVLEKLATEYAGQFILAK
CCCEEEEEEEHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
VDCDAEQMLASQFGLRAIPTVYLFKDGQPLDGFQGPQPEEQIRDLLARVLPKPEELKAAQ
ECCCHHHHHHHHCCCHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
AAELMAAGNMAEALPLLKEAHALAPTRSDITLALAETLIALNRSDEASTLLTTVPLQDQD
HHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHEEEECCCCCCC
THYQSLIAQIELMKQAADTPEIQQLQLQVAEQPQNVALAVQLALQLHQVGRNEEALTLLM
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
DHLRHDLAAGDGAARKTLMDILAALGTGDALAAKFRRQLYSLMY
HHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]