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The map label for this gene is dapB [H]

Identifier: 238917509

GI number: 238917509

Start: 1639830

End: 1640600

Strand: Reverse

Name: dapB [H]

Synonym: EUBELI_01588

Alternate gene names: 238917509

Gene position: 1640600-1639830 (Counterclockwise)

Preceding gene: 238917510

Following gene: 238917507

Centisome position: 76.51

GC content: 40.73

Gene sequence:

>771_bases
ATGAACATGACAAGAATAATTATGCATGGCTGTAACGGCCATATGGGACAGGTTATTACAGGAATAGTTGCTAATGATGC
TAATGCACAGATAGTAGCAGGAATTGACCTTCGCGATGACGGACATAACTCATATCCGGTATTTGCTTCATTAGAAGAAT
GTAATGTTGAAGCAGATGTTATTATTGATTTCGCATCAGCTAAGGCAGAGGATACACTTGTTGACTATATTAAGAAAACT
AAGATTCCTGCTGTAATATGTACAACAGGATTAAGCGATGGGCAGATTGCATCAATCAATGAAGCATCAAAGAGTGTTGC
AATATTACGTTCAGCTAATATGTCACTTGGAATCAATACATTATTCAAGCTTTTACAGGATGCTGCCAAAGTGTTTGCGT
CAGCAGGCTTTGATATTGAGATAGTTGAAAAGCACCACAACCAGAAGCTTGATGCGCCAAGTGGAACAGCTCTTGCACTT
GCAGATTCAATGAAGGAAGTGCTTGATGATGATTATTTCTACAGATATGACAGAAGCCAGTTAAGACAGAAGCGTGATCC
TAAGGAAATCGGAATCAGTGCCGTAAGAGGCGGAACTATTGTTGGAGAGCATGAAGTAATCTTTGCTGGAGAAGACGAGG
TTATAGAATTCAAGCATACCGCACATTCTAAGGCTGTATTTGCAAAGGGTGCAGTTGAGGCTGCCAAGTTCCTTGCAGGA
AAGCCGGCTGGAATGTACGATATGAGAGATGTTATTGCAGCTAAGAACTAG

Upstream 100 bases:

>100_bases
TGGGACCACTCAGAAGCCCATTATGCGAGATGGAAGAGGCTAACCTTGAGAGATTAAAGAAAGCAATGGTTAACTACGGA
ATACTTTAATTGACAGGAGA

Downstream 100 bases:

>100_bases
TTGTCAGAACAGTTAATATAATGATATTCAATGCGGCTTGCTTCGGCGAAGCCGCATTTTTTATATAATGCCACAGCTGC
CCTGTTATTGCTTGTTACAT

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MNMTRIIMHGCNGHMGQVITGIVANDANAQIVAGIDLRDDGHNSYPVFASLEECNVEADVIIDFASAKAEDTLVDYIKKT
KIPAVICTTGLSDGQIASINEASKSVAILRSANMSLGINTLFKLLQDAAKVFASAGFDIEIVEKHHNQKLDAPSGTALAL
ADSMKEVLDDDYFYRYDRSQLRQKRDPKEIGISAVRGGTIVGEHEVIFAGEDEVIEFKHTAHSKAVFAKGAVEAAKFLAG
KPAGMYDMRDVIAAKN

Sequences:

>Translated_256_residues
MNMTRIIMHGCNGHMGQVITGIVANDANAQIVAGIDLRDDGHNSYPVFASLEECNVEADVIIDFASAKAEDTLVDYIKKT
KIPAVICTTGLSDGQIASINEASKSVAILRSANMSLGINTLFKLLQDAAKVFASAGFDIEIVEKHHNQKLDAPSGTALAL
ADSMKEVLDDDYFYRYDRSQLRQKRDPKEIGISAVRGGTIVGEHEVIFAGEDEVIEFKHTAHSKAVFAKGAVEAAKFLAG
KPAGMYDMRDVIAAKN
>Mature_256_residues
MNMTRIIMHGCNGHMGQVITGIVANDANAQIVAGIDLRDDGHNSYPVFASLEECNVEADVIIDFASAKAEDTLVDYIKKT
KIPAVICTTGLSDGQIASINEASKSVAILRSANMSLGINTLFKLLQDAAKVFASAGFDIEIVEKHHNQKLDAPSGTALAL
ADSMKEVLDDDYFYRYDRSQLRQKRDPKEIGISAVRGGTIVGEHEVIFAGEDEVIEFKHTAHSKAVFAKGAVEAAKFLAG
KPAGMYDMRDVIAAKN

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=268, Percent_Identity=36.5671641791045, Blast_Score=140, Evalue=6e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 27631; Mature: 27631

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMTRIIMHGCNGHMGQVITGIVANDANAQIVAGIDLRDDGHNSYPVFASLEECNVEADV
CCCEEEEEECCCCCHHHHHEEEEECCCCCEEEEEEEECCCCCCCCCEEEEHHHCCCCEEE
IIDFASAKAEDTLVDYIKKTKIPAVICTTGLSDGQIASINEASKSVAILRSANMSLGINT
EEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEECCHHHHHEEEEECCCCCCCHHH
LFKLLQDAAKVFASAGFDIEIVEKHHNQKLDAPSGTALALADSMKEVLDDDYFYRYDRSQ
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCHHH
LRQKRDPKEIGISAVRGGTIVGEHEVIFAGEDEVIEFKHTAHSKAVFAKGAVEAAKFLAG
HHHHCCHHHHCCEEECCCEEECCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
KPAGMYDMRDVIAAKN
CCCCCHHHHHHHHCCC
>Mature Secondary Structure
MNMTRIIMHGCNGHMGQVITGIVANDANAQIVAGIDLRDDGHNSYPVFASLEECNVEADV
CCCEEEEEECCCCCHHHHHEEEEECCCCCEEEEEEEECCCCCCCCCEEEEHHHCCCCEEE
IIDFASAKAEDTLVDYIKKTKIPAVICTTGLSDGQIASINEASKSVAILRSANMSLGINT
EEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEECCHHHHHEEEEECCCCCCCHHH
LFKLLQDAAKVFASAGFDIEIVEKHHNQKLDAPSGTALALADSMKEVLDDDYFYRYDRSQ
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCHHH
LRQKRDPKEIGISAVRGGTIVGEHEVIFAGEDEVIEFKHTAHSKAVFAKGAVEAAKFLAG
HHHHCCHHHHCCEEECCCEEECCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
KPAGMYDMRDVIAAKN
CCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]