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The map label for this gene is ydjF [H]

Identifier: 238917482

GI number: 238917482

Start: 1611634

End: 1612353

Strand: Reverse

Name: ydjF [H]

Synonym: EUBELI_01560

Alternate gene names: 238917482

Gene position: 1612353-1611634 (Counterclockwise)

Preceding gene: 238917484

Following gene: 238917481

Centisome position: 75.2

GC content: 43.75

Gene sequence:

>720_bases
ATGTGCCAGAAAGCGGCACAGGAATGGAGGATTATTATGGGTATTTTAACAAGATTCAAGGACATTATGAGCGCTAACAT
CAATGCACTTCTCGATAAGTGTGAAGATCCAGAGAAGATGATTGACCAGTACATGAGAAATCTTGAGAGCGACCTTGGAA
AGGTTAAGGCAGAGACAGCTTCAGTTATGGCTGAGGAGACAAGATGTAAAAGAGAGCTTGATGAATGCACAGCAGATGTT
GCCAAGTATCAGTCATATGCAGAAAAAGCTCTTAAGGCTGGCAACGAGGCAGATGCAAGAACATTCCTTGAGAAGAAGCA
GCAGTTAGTTTCTAAGCAGGCTACATTACAGCAGACATATAATATTGCAGCAGACAATGCAGCTAAGATGCGTCAGATGC
ATGATAAGCTCTGCAAGGATATCCAGTCTCTTGAAGCAAGAAGAGATGCAGTTAAGGCTAAGGTTGCAGCAGCTAAGGCT
CAGGAGAGAATCAACAAGGTTGGTTCAAGTGTTAACAGTGTTGGAACAAGCATGGATGCATTCGGTAAGATGGAGGCTAA
GGCTAATAAGATGCTTGACGAGGCTAATGCAATGGCAGAGCTTAACCAGACACAGCTTGAGGCAGATGTTGACAGTCTTG
CAGCTAAGTATGATGCAGAGCCAGCTAACACAGCAGTTGATGATGAATTAGCAGCACTTAAGGCTCAGATGGGCTTATAA

Upstream 100 bases:

>100_bases
TAGGAGCAAATATTCGTGACTTTTTACTCCTGATATATTATAATGAAAAAGGTTTTTTAAGAATTCTGGGAGACAGAATT
CGGATGCACCAGAGGGTGAT

Downstream 100 bases:

>100_bases
TTCAGAAGCACATTTATAATGAGATAAGCAATACATAGATAAGGAGAGGGAACATGGGATTATTCAAAGGGCAGTTTGCC
AACGTAGTTGAATGGGAAGA

Product: phage shock protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MCQKAAQEWRIIMGILTRFKDIMSANINALLDKCEDPEKMIDQYMRNLESDLGKVKAETASVMAEETRCKRELDECTADV
AKYQSYAEKALKAGNEADARTFLEKKQQLVSKQATLQQTYNIAADNAAKMRQMHDKLCKDIQSLEARRDAVKAKVAAAKA
QERINKVGSSVNSVGTSMDAFGKMEAKANKMLDEANAMAELNQTQLEADVDSLAAKYDAEPANTAVDDELAALKAQMGL

Sequences:

>Translated_239_residues
MCQKAAQEWRIIMGILTRFKDIMSANINALLDKCEDPEKMIDQYMRNLESDLGKVKAETASVMAEETRCKRELDECTADV
AKYQSYAEKALKAGNEADARTFLEKKQQLVSKQATLQQTYNIAADNAAKMRQMHDKLCKDIQSLEARRDAVKAKVAAAKA
QERINKVGSSVNSVGTSMDAFGKMEAKANKMLDEANAMAELNQTQLEADVDSLAAKYDAEPANTAVDDELAALKAQMGL
>Mature_239_residues
MCQKAAQEWRIIMGILTRFKDIMSANINALLDKCEDPEKMIDQYMRNLESDLGKVKAETASVMAEETRCKRELDECTADV
AKYQSYAEKALKAGNEADARTFLEKKQQLVSKQATLQQTYNIAADNAAKMRQMHDKLCKDIQSLEARRDAVKAKVAAAKA
QERINKVGSSVNSVGTSMDAFGKMEAKANKMLDEANAMAELNQTQLEADVDSLAAKYDAEPANTAVDDELAALKAQMGL

Specific function: The Phage Shock Protein (Psp) Operon (Pspabce) May Play A Significant Role In The Competition For Survival Under Nutrient- Or Energy-Limited Conditions. Pspa Has A Role As A Negative Regulator, Is Required For Efficient Translocation And Has An Unknown Fu

COG id: COG1842

COG function: function code KT; Phage shock protein A (IM30), suppresses sigma54-dependent transcription

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PspA/IM30 family [H]

Homologues:

Organism=Escherichia coli, GI2367118, Length=225, Percent_Identity=29.7777777777778, Blast_Score=87, Evalue=9e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007157 [H]

Pfam domain/function: PF04012 PspA_IM30 [H]

EC number: NA

Molecular weight: Translated: 26382; Mature: 26382

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCQKAAQEWRIIMGILTRFKDIMSANINALLDKCEDPEKMIDQYMRNLESDLGKVKAETA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
SVMAEETRCKRELDECTADVAKYQSYAEKALKAGNEADARTFLEKKQQLVSKQATLQQTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
NIAADNAAKMRQMHDKLCKDIQSLEARRDAVKAKVAAAKAQERINKVGSSVNSVGTSMDA
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGKMEAKANKMLDEANAMAELNQTQLEADVDSLAAKYDAEPANTAVDDELAALKAQMGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MCQKAAQEWRIIMGILTRFKDIMSANINALLDKCEDPEKMIDQYMRNLESDLGKVKAETA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
SVMAEETRCKRELDECTADVAKYQSYAEKALKAGNEADARTFLEKKQQLVSKQATLQQTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
NIAADNAAKMRQMHDKLCKDIQSLEARRDAVKAKVAAAKAQERINKVGSSVNSVGTSMDA
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGKMEAKANKMLDEANAMAELNQTQLEADVDSLAAKYDAEPANTAVDDELAALKAQMGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9455482; 9384377; 8755892 [H]