| Definition | Klebsiella pneumoniae NTUH-K2044 chromosome, complete genome. |
|---|---|
| Accession | NC_012731 |
| Length | 5,248,520 |
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The map label for this gene is yagH [C]
Identifier: 238896516
GI number: 238896516
Start: 4495138
End: 4496670
Strand: Reverse
Name: yagH [C]
Synonym: KP1_4700
Alternate gene names: 238896516
Gene position: 4496670-4495138 (Counterclockwise)
Preceding gene: 238896517
Following gene: 238896515
Centisome position: 85.68
GC content: 57.08
Gene sequence:
>1533_bases ATGCGAAATATGACCCCTTCTGAATACCAGAATCCTATCTTATGCGCCGATTATTCCGACCCGGATATCGTGCGCGTAGG CGATGATTTCTTTATGGTCTCTTCCAGTTTTAACCATGTGCCCGCTTTACCGATCCTGCATTCAACGGACCTGGTTAATT GGACTATCATCAACCACGTTATGGATGAACTGCCGCTACCTGGTTATGACCGGTATCAGCCGGGTAAGGGCGTATGGGCG CCGTCGATTCGCTGGCACGATGGCAAGCTGTGGGTCTGCTTCAGCACGCCAGATGAAGGTATTTTTATCTGCCATACCGA GGATCCGTGGGGGGAATGGAGCGCTCCGCACTGCCTGCGCGAGGCCAGAGGTTGGATAGATCCCTGCCCGTTCTGGGACG ACAATGGTCAGGCCTGGTTGGTACATGCCTTCGCCCATAGCCGCAGCGGCATCAAGCATAAACTGCAGTTGTTTGCGATG GCGCCGGACGCCAGCGAATTGCTGGGCGAAGGGCAGATTATCTATGACGGCTGCTGCGATTTACCTACCCTTGAGGGGCC AAAGGTTTATCAACGCGCCGGTTGGTACTACATCTTTGCTCCTGCGGGCGGGGTTGAAAATGGCTGGCAGACGGTACTGC GCGCGCGCCAGATGACGGGGCCCTGGGAAGCCAAAAACGTGCTTTTCCAGGGAAACACCTCGATAAACGGACCACATCAG GGCGGCTGGGTGGAGGGTGAGGAGGGCGAATGCTGGTTTGTTCATTTCCAGGACTTACACCTCTATGGCCGCGTGGTTCA CCTCCAGCCGATGTCCTGGGGTAACGATGGCTGGCCGCGTATCGGTGAGCAGATTGGCAACGGCGGCGTCGGACAGCCGG TTTTACGTTGGCCGCGTCCTAAAGGGTTAACGCCTTCACCGGCAATGGCGCCGCAAACCAGCGACTATTTTGCGCAAGGC CAACCGGGAATACAGTGGCAGTGGCAGGCTAACCCCAGCCCTGAGTGGCTGCTGCCAGCGAAAGGCGAACTTCGATTACG CTGCGTCCCATTATCCGAAGTCGATGGACAGAGAGCGTTATACTGGGCGCCGCAGCTGTTGCTGCAGAAATTCCCGGCGC TAACTTTTAGCGCGAAAACAAGCGTAACGTTATATGCCGCTCAGGACGGTGATGCCGGAGGCCTGATCGTATACGGCGAA CGCTACGCCGCTTTGCTGGTGGAGTTTGGGCAAGGGGGTTACCGGCTCGTGTGGCGACACGGTTGGATGAGCGATGCGGG CGTGGTGCGCGAAACTCGTCAGGTTCTTGCTGAGCTTAAGTGCGGCAAGTGTCAGCTGCAGGTGGCCGTAGGCGAAGGCG GACTGTGTCAATTTTCCTGGCGAGCCGAGGAGGAGTGGCGGAAGGTTCCTCTTTGTTTTGCTGCCGGGAAGGGAAAATGG GTCGGCGCGAAATTTGGCCTGCTGGCTGCTTCAATGGTTGGCCTACAAAGCGAGGGCTACTCCGCTTTGCAGGACTTTGA GGTCATGCTTTAA
Upstream 100 bases:
>100_bases ATGATGCAGACAATTCAGCGCGAGCTGTCCATGCGTCAGCAGCAGGGGCATTCAGAGACGCATTTGCCGCTAAACGCCGT TCCGGAAAAGGCCTGAGGAG
Downstream 100 bases:
>100_bases AGAAACCGTTTCTGGCCGCCTGCAGATGACGCGGGCGGCTGATGTTGCATAAGCGTTACCCTGTTGCGATATAATGGCGG CCGTTTATGTTAACTGACAG
Product: putative glycoside hydrolase
Products: NA
Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]
Number of amino acids: Translated: 510; Mature: 510
Protein sequence:
>510_residues MRNMTPSEYQNPILCADYSDPDIVRVGDDFFMVSSSFNHVPALPILHSTDLVNWTIINHVMDELPLPGYDRYQPGKGVWA PSIRWHDGKLWVCFSTPDEGIFICHTEDPWGEWSAPHCLREARGWIDPCPFWDDNGQAWLVHAFAHSRSGIKHKLQLFAM APDASELLGEGQIIYDGCCDLPTLEGPKVYQRAGWYYIFAPAGGVENGWQTVLRARQMTGPWEAKNVLFQGNTSINGPHQ GGWVEGEEGECWFVHFQDLHLYGRVVHLQPMSWGNDGWPRIGEQIGNGGVGQPVLRWPRPKGLTPSPAMAPQTSDYFAQG QPGIQWQWQANPSPEWLLPAKGELRLRCVPLSEVDGQRALYWAPQLLLQKFPALTFSAKTSVTLYAAQDGDAGGLIVYGE RYAALLVEFGQGGYRLVWRHGWMSDAGVVRETRQVLAELKCGKCQLQVAVGEGGLCQFSWRAEEEWRKVPLCFAAGKGKW VGAKFGLLAASMVGLQSEGYSALQDFEVML
Sequences:
>Translated_510_residues MRNMTPSEYQNPILCADYSDPDIVRVGDDFFMVSSSFNHVPALPILHSTDLVNWTIINHVMDELPLPGYDRYQPGKGVWA PSIRWHDGKLWVCFSTPDEGIFICHTEDPWGEWSAPHCLREARGWIDPCPFWDDNGQAWLVHAFAHSRSGIKHKLQLFAM APDASELLGEGQIIYDGCCDLPTLEGPKVYQRAGWYYIFAPAGGVENGWQTVLRARQMTGPWEAKNVLFQGNTSINGPHQ GGWVEGEEGECWFVHFQDLHLYGRVVHLQPMSWGNDGWPRIGEQIGNGGVGQPVLRWPRPKGLTPSPAMAPQTSDYFAQG QPGIQWQWQANPSPEWLLPAKGELRLRCVPLSEVDGQRALYWAPQLLLQKFPALTFSAKTSVTLYAAQDGDAGGLIVYGE RYAALLVEFGQGGYRLVWRHGWMSDAGVVRETRQVLAELKCGKCQLQVAVGEGGLCQFSWRAEEEWRKVPLCFAAGKGKW VGAKFGLLAASMVGLQSEGYSALQDFEVML >Mature_510_residues MRNMTPSEYQNPILCADYSDPDIVRVGDDFFMVSSSFNHVPALPILHSTDLVNWTIINHVMDELPLPGYDRYQPGKGVWA PSIRWHDGKLWVCFSTPDEGIFICHTEDPWGEWSAPHCLREARGWIDPCPFWDDNGQAWLVHAFAHSRSGIKHKLQLFAM APDASELLGEGQIIYDGCCDLPTLEGPKVYQRAGWYYIFAPAGGVENGWQTVLRARQMTGPWEAKNVLFQGNTSINGPHQ GGWVEGEEGECWFVHFQDLHLYGRVVHLQPMSWGNDGWPRIGEQIGNGGVGQPVLRWPRPKGLTPSPAMAPQTSDYFAQG QPGIQWQWQANPSPEWLLPAKGELRLRCVPLSEVDGQRALYWAPQLLLQKFPALTFSAKTSVTLYAAQDGDAGGLIVYGE RYAALLVEFGQGGYRLVWRHGWMSDAGVVRETRQVLAELKCGKCQLQVAVGEGGLCQFSWRAEEEWRKVPLCFAAGKGKW VGAKFGLLAASMVGLQSEGYSALQDFEVML
Specific function: Unknown
COG id: COG3507
COG function: function code G; Beta-xylosidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 43 family [H]
Homologues:
Organism=Escherichia coli, GI1786467, Length=227, Percent_Identity=29.0748898678414, Blast_Score=103, Evalue=2e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008985 - InterPro: IPR013320 - InterPro: IPR006710 [H]
Pfam domain/function: PF04616 Glyco_hydro_43 [H]
EC number: =3.2.1.37 [H]
Molecular weight: Translated: 57005; Mature: 57005
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNMTPSEYQNPILCADYSDPDIVRVGDDFFMVSSSFNHVPALPILHSTDLVNWTIINHV CCCCCCHHHCCCEEEECCCCCCEEEECCCEEEEECCCCCCCCCCEEECCCCEEHHHHHHH MDELPLPGYDRYQPGKGVWAPSIRWHDGKLWVCFSTPDEGIFICHTEDPWGEWSAPHCLR HHHCCCCCCCCCCCCCCCCCCCEEEECCEEEEEEECCCCCEEEEECCCCCCCCCCCHHHH EARGWIDPCPFWDDNGQAWLVHAFAHSRSGIKHKLQLFAMAPDASELLGEGQIIYDGCCD HHCCCCCCCCCCCCCCCEEEEEEEHHCCCCCCEEEEEEEECCCHHHHHCCCCEEEECCCC LPTLEGPKVYQRAGWYYIFAPAGGVENGWQTVLRARQMTGPWEAKNVLFQGNTSINGPHQ CCCCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC GGWVEGEEGECWFVHFQDLHLYGRVVHLQPMSWGNDGWPRIGEQIGNGGVGQPVLRWPRP CCEEECCCCCEEEEEEEEEEEEEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCHHCCCCC KGLTPSPAMAPQTSDYFAQGQPGIQWQWQANPSPEWLLPAKGELRLRCVPLSEVDGQRAL CCCCCCCCCCCCCCCHHHCCCCCEEEEECCCCCCCEEECCCCCEEEEEEECCCCCCCEEE YWAPQLLLQKFPALTFSAKTSVTLYAAQDGDAGGLIVYGERYAALLVEFGQGGYRLVWRH EHHHHHHHHHCCCEEEECCCEEEEEEECCCCCCCEEEECCCEEEEEEEECCCCEEEEEEC GWMSDAGVVRETRQVLAELKCGKCQLQVAVGEGGLCQFSWRAEEEWRKVPLCFAAGKGKW CCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCHHHCCCCEEEECCCCCE VGAKFGLLAASMVGLQSEGYSALQDFEVML ECHHHHHHHHHHHHCCCCCCHHHHHHEECC >Mature Secondary Structure MRNMTPSEYQNPILCADYSDPDIVRVGDDFFMVSSSFNHVPALPILHSTDLVNWTIINHV CCCCCCHHHCCCEEEECCCCCCEEEECCCEEEEECCCCCCCCCCEEECCCCEEHHHHHHH MDELPLPGYDRYQPGKGVWAPSIRWHDGKLWVCFSTPDEGIFICHTEDPWGEWSAPHCLR HHHCCCCCCCCCCCCCCCCCCCEEEECCEEEEEEECCCCCEEEEECCCCCCCCCCCHHHH EARGWIDPCPFWDDNGQAWLVHAFAHSRSGIKHKLQLFAMAPDASELLGEGQIIYDGCCD HHCCCCCCCCCCCCCCCEEEEEEEHHCCCCCCEEEEEEEECCCHHHHHCCCCEEEECCCC LPTLEGPKVYQRAGWYYIFAPAGGVENGWQTVLRARQMTGPWEAKNVLFQGNTSINGPHQ CCCCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC GGWVEGEEGECWFVHFQDLHLYGRVVHLQPMSWGNDGWPRIGEQIGNGGVGQPVLRWPRP CCEEECCCCCEEEEEEEEEEEEEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCHHCCCCC KGLTPSPAMAPQTSDYFAQGQPGIQWQWQANPSPEWLLPAKGELRLRCVPLSEVDGQRAL CCCCCCCCCCCCCCCHHHCCCCCEEEEECCCCCCCEEECCCCCEEEEEEECCCCCCCEEE YWAPQLLLQKFPALTFSAKTSVTLYAAQDGDAGGLIVYGERYAALLVEFGQGGYRLVWRH EHHHHHHHHHCCCEEEECCCEEEEEEECCCCCCCEEEECCCEEEEEEEECCCCEEEEEEC GWMSDAGVVRETRQVLAELKCGKCQLQVAVGEGGLCQFSWRAEEEWRKVPLCFAAGKGKW CCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCHHHCCCCEEEECCCCCE VGAKFGLLAASMVGLQSEGYSALQDFEVML ECHHHHHHHHHHHHCCCCCCHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA