Click here to switch to the map view.

The map label for this gene is hofB [H]

Identifier: 238893086

GI number: 238893086

Start: 912908

End: 914293

Strand: Reverse

Name: hofB [H]

Synonym: KP1_0930

Alternate gene names: 238893086

Gene position: 914293-912908 (Counterclockwise)

Preceding gene: 238893087

Following gene: 238893085

Centisome position: 17.42

GC content: 61.18

Gene sequence:

>1386_bases
ATGAAAACAGAACAGCTGATCCCCCTCTGCCGTCGCTACCACGCCATGCTGCTGCATAGCGATGAACAGACAATCTCTAT
TGCGGTGGTTAATACCCCGCCGGCGGAGTTAATGGAGGCGCTACGCTTCGCGACGCAAAAGCGGATCGACATTGAATGCT
GGAGCCAGGAGCAGATGGATAAGCGTCTGCAGGCCCAGGAAAAGCAGGCGCAACTGGCGCAGAACGACGGGCCGGAAAAT
ATCGCCGAACGGGTCAACCAGATCCTCGAACAGGCCCTGCGTCAGCGGGCGTCTGATATTCATATCGAGCCCACGGAAAC
GCACTTACGCATCCGCCTGCGGGTCGATGGCGTCCTTCACGCCCTACCGTTGCTGGCTCCCGAACTGGCCGCACCGGTTA
TCGCGCGACTCAAGGTCCTGGCCAGTCTCGATATCGCCGAGCACCGTTTACCGCAGGATGGCCAGTTCGCGCTGAATCTT
GCGGGACGACCGCTCTCTTTTCGCATCGCCACTCTGCCCTGCCGCTATGGCGAAAAGATTGTCCTGCGCCTTCTGCATCA
GGTTGACCAGGCGCTGGATCTGGAAGCACTCGGACTCTCATCCTCCCAGTTGGCGGCCTTTCGCCAGGCGCTGAACCAGC
CGCAGGGTCTGCTGCTGGTCACCGGCCCAACCGGAAGCGGGAAAACGGTGACCCTCTACAGCGCCCTGCAGGCCAGAAAC
CGTGAGCAAGTGAATATCTGTAGCGTGGAGGATCCACTGGAGATCCCCATCGCCGGGATGAACCAGACGCAAATCAATCC
CCGCGCCGGACTCACTTTTCACAGTGTGCTGCGCGCCCTGTTACGCCAGGATCCGGATATTGTCATGGTGGGCGAGATCC
GCGATGCCGAGACCGCTGAAATCGCGCTCAAAGCCGCCCAGACCGGTCATCTGGTGCTCTCCACCCTGCACACCAATTCC
ACCAGCGAAACCCTGACCCGCCTGCAGCAAATGGGCATCGCCCGCTGGATGATTTCCTCTGCGCTCTCGCTGGTCATCGC
CCAGCGTCTGGTCCGCAAGCTGTGTCCCCACTGTCGGCGTAATGCCGGCAGCGCCGCCGACCTGCCGCACAGCCTGTGGC
CCCGCCCGCTGCCACGCTGGCAGGCAGCGGGCTGCGAACATTGTTACCACGGATATTACGGCCGGCTGGCGCTGTTCGAA
GTGCTGCCTGTTACCCCCGGGCTACGCCAGGGGATAGTCCAGGGACTTAACGCCATTGAGATTGAATCTCTGGCGCGAGC
CGCAGGGATGATGACGCTTTTTGAAAGCGGCTGTCAGGCTATCGAACAGGGATTGACCAGCCTCGAAGAGGTGGTGCGGG
TGCTGGGGATCCCCCATGGCGACTAA

Upstream 100 bases:

>100_bases
GAGGGCGTCACCGGCTGGCAGCGCGTCTGCACCATCACCGGCAATAGCGCGCTTCAGCAGGCCTGCGAAGACGTTTTCCG
GGTGAAGTGAGGGCGAATGC

Downstream 100 bases:

>100_bases
GCGTCTCTGGCGCTGGCGCGGTATTGATGTGCAGGGCGCCCCTTGTCAGGGGATGCTATGGCAAACCAAGCGTCTGGAGG
TCCTGCAGCACCTCCAACAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 461

Protein sequence:

>461_residues
MKTEQLIPLCRRYHAMLLHSDEQTISIAVVNTPPAELMEALRFATQKRIDIECWSQEQMDKRLQAQEKQAQLAQNDGPEN
IAERVNQILEQALRQRASDIHIEPTETHLRIRLRVDGVLHALPLLAPELAAPVIARLKVLASLDIAEHRLPQDGQFALNL
AGRPLSFRIATLPCRYGEKIVLRLLHQVDQALDLEALGLSSSQLAAFRQALNQPQGLLLVTGPTGSGKTVTLYSALQARN
REQVNICSVEDPLEIPIAGMNQTQINPRAGLTFHSVLRALLRQDPDIVMVGEIRDAETAEIALKAAQTGHLVLSTLHTNS
TSETLTRLQQMGIARWMISSALSLVIAQRLVRKLCPHCRRNAGSAADLPHSLWPRPLPRWQAAGCEHCYHGYYGRLALFE
VLPVTPGLRQGIVQGLNAIEIESLARAAGMMTLFESGCQAIEQGLTSLEEVVRVLGIPHGD

Sequences:

>Translated_461_residues
MKTEQLIPLCRRYHAMLLHSDEQTISIAVVNTPPAELMEALRFATQKRIDIECWSQEQMDKRLQAQEKQAQLAQNDGPEN
IAERVNQILEQALRQRASDIHIEPTETHLRIRLRVDGVLHALPLLAPELAAPVIARLKVLASLDIAEHRLPQDGQFALNL
AGRPLSFRIATLPCRYGEKIVLRLLHQVDQALDLEALGLSSSQLAAFRQALNQPQGLLLVTGPTGSGKTVTLYSALQARN
REQVNICSVEDPLEIPIAGMNQTQINPRAGLTFHSVLRALLRQDPDIVMVGEIRDAETAEIALKAAQTGHLVLSTLHTNS
TSETLTRLQQMGIARWMISSALSLVIAQRLVRKLCPHCRRNAGSAADLPHSLWPRPLPRWQAAGCEHCYHGYYGRLALFE
VLPVTPGLRQGIVQGLNAIEIESLARAAGMMTLFESGCQAIEQGLTSLEEVVRVLGIPHGD
>Mature_461_residues
MKTEQLIPLCRRYHAMLLHSDEQTISIAVVNTPPAELMEALRFATQKRIDIECWSQEQMDKRLQAQEKQAQLAQNDGPEN
IAERVNQILEQALRQRASDIHIEPTETHLRIRLRVDGVLHALPLLAPELAAPVIARLKVLASLDIAEHRLPQDGQFALNL
AGRPLSFRIATLPCRYGEKIVLRLLHQVDQALDLEALGLSSSQLAAFRQALNQPQGLLLVTGPTGSGKTVTLYSALQARN
REQVNICSVEDPLEIPIAGMNQTQINPRAGLTFHSVLRALLRQDPDIVMVGEIRDAETAEIALKAAQTGHLVLSTLHTNS
TSETLTRLQQMGIARWMISSALSLVIAQRLVRKLCPHCRRNAGSAADLPHSLWPRPLPRWQAAGCEHCYHGYYGRLALFE
VLPVTPGLRQGIVQGLNAIEIESLARAAGMMTLFESGCQAIEQGLTSLEEVVRVLGIPHGD

Specific function: Unknown

COG id: COG2804

COG function: function code NU; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1786296, Length=461, Percent_Identity=64.8590021691974, Blast_Score=621, Evalue=1e-179,
Organism=Escherichia coli, GI1789723, Length=387, Percent_Identity=45.4780361757106, Blast_Score=327, Evalue=1e-90,
Organism=Escherichia coli, GI87082188, Length=279, Percent_Identity=32.9749103942652, Blast_Score=109, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007831
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E; PF05157 GSPII_E_N [H]

EC number: NA

Molecular weight: Translated: 50938; Mature: 50938

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTEQLIPLCRRYHAMLLHSDEQTISIAVVNTPPAELMEALRFATQKRIDIECWSQEQMD
CCCHHHHHHHHHHHHHHEECCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCEECCHHHHH
KRLQAQEKQAQLAQNDGPENIAERVNQILEQALRQRASDIHIEPTETHLRIRLRVDGVLH
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECHHHH
ALPLLAPELAAPVIARLKVLASLDIAEHRLPQDGQFALNLAGRPLSFRIATLPCRYGEKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCHHH
VLRLLHQVDQALDLEALGLSSSQLAAFRQALNQPQGLLLVTGPTGSGKTVTLYSALQARN
HHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEHHHHHHHCC
REQVNICSVEDPLEIPIAGMNQTQINPRAGLTFHSVLRALLRQDPDIVMVGEIRDAETAE
CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHH
IALKAAQTGHLVLSTLHTNSTSETLTRLQQMGIARWMISSALSLVIAQRLVRKLCPHCRR
HHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NAGSAADLPHSLWPRPLPRWQAAGCEHCYHGYYGRLALFEVLPVTPGLRQGIVQGLNAIE
CCCCCCCCCHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH
IESLARAAGMMTLFESGCQAIEQGLTSLEEVVRVLGIPHGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKTEQLIPLCRRYHAMLLHSDEQTISIAVVNTPPAELMEALRFATQKRIDIECWSQEQMD
CCCHHHHHHHHHHHHHHEECCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCEECCHHHHH
KRLQAQEKQAQLAQNDGPENIAERVNQILEQALRQRASDIHIEPTETHLRIRLRVDGVLH
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECHHHH
ALPLLAPELAAPVIARLKVLASLDIAEHRLPQDGQFALNLAGRPLSFRIATLPCRYGEKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCHHH
VLRLLHQVDQALDLEALGLSSSQLAAFRQALNQPQGLLLVTGPTGSGKTVTLYSALQARN
HHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEHHHHHHHCC
REQVNICSVEDPLEIPIAGMNQTQINPRAGLTFHSVLRALLRQDPDIVMVGEIRDAETAE
CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHH
IALKAAQTGHLVLSTLHTNSTSETLTRLQQMGIARWMISSALSLVIAQRLVRKLCPHCRR
HHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NAGSAADLPHSLWPRPLPRWQAAGCEHCYHGYYGRLALFEVLPVTPGLRQGIVQGLNAIE
CCCCCCCCCHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH
IESLARAAGMMTLFESGCQAIEQGLTSLEEVVRVLGIPHGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7959070; 8202364; 9278503 [H]