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The map label for this gene is ppdD [H]

Identifier: 238893087

GI number: 238893087

Start: 914304

End: 914735

Strand: Reverse

Name: ppdD [H]

Synonym: KP1_0931

Alternate gene names: 238893087

Gene position: 914735-914304 (Counterclockwise)

Preceding gene: 238893088

Following gene: 238893086

Centisome position: 17.43

GC content: 60.88

Gene sequence:

>432_bases
ATGGATAAACAACGAGGTTTTACCCTGATTGAACTGATGGTGGTTATCGGAATCATCGCCATTCTTAGCGCCATCGGCAT
CCCGGCCTACCAGAACTACCTGCGTAAAGCCGCCCTCACCGACCTGCTGCAGACCTTTGTCCCTTACCGGACAGCCATCG
AACTTTGCGCGCTCGATCATGGCGGCCTAACGCCATGCGACGGCGGCAGCAACGGCATTCCCTCGCCGACAACCACGCGC
TACCTCTCCGCCATGAGCGTGGCCAAAGGGGTCGTCACCCTCACCGGTCAGGAGAGTCTGAACGGACTGGGGGTCACCCT
GACGCCGACCTGGGACAATGCCGAGGGCGTCACCGGCTGGCAGCGCGTCTGCACCATCACCGGCAATAGCGCGCTTCAGC
AGGCCTGCGAAGACGTTTTCCGGGTGAAGTGA

Upstream 100 bases:

>100_bases
AGATAAAAACCCTGGAACCCGCTTTCCCGGATCGTTTTCGCCCCCTCGCCTGCGCCCCTCAATCCCTTCACAGTGCTCCT
GTCAAAACAAGGAGCGACTT

Downstream 100 bases:

>100_bases
GGGCGAATGCATGAAAACAGAACAGCTGATCCCCCTCTGCCGTCGCTACCACGCCATGCTGCTGCATAGCGATGAACAGA
CAATCTCTATTGCGGTGGTT

Product: putative major pilin subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDLLQTFVPYRTAIELCALDHGGLTPCDGGSNGIPSPTTTR
YLSAMSVAKGVVTLTGQESLNGLGVTLTPTWDNAEGVTGWQRVCTITGNSALQQACEDVFRVK

Sequences:

>Translated_143_residues
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDLLQTFVPYRTAIELCALDHGGLTPCDGGSNGIPSPTTTR
YLSAMSVAKGVVTLTGQESLNGLGVTLTPTWDNAEGVTGWQRVCTITGNSALQQACEDVFRVK
>Mature_143_residues
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDLLQTFVPYRTAIELCALDHGGLTPCDGGSNGIPSPTTTR
YLSAMSVAKGVVTLTGQESLNGLGVTLTPTWDNAEGVTGWQRVCTITGNSALQQACEDVFRVK

Specific function: Not yet known [H]

COG id: COG4969

COG function: function code NU; Tfp pilus assembly protein, major pilin PilA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-Me-Phe pilin family [H]

Homologues:

Organism=Escherichia coli, GI1786297, Length=141, Percent_Identity=87.2340425531915, Blast_Score=258, Evalue=1e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012902
- InterPro:   IPR001120 [H]

Pfam domain/function: PF07963 N_methyl [H]

EC number: NA

Molecular weight: Translated: 15233; Mature: 15233

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDLLQTFVPYRTAIELCALDH
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GGLTPCDGGSNGIPSPTTTRYLSAMSVAKGVVTLTGQESLNGLGVTLTPTWDNAEGVTGW
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCCEEEECCCCCCCCCCHH
QRVCTITGNSALQQACEDVFRVK
HHHEEECCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDLLQTFVPYRTAIELCALDH
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GGLTPCDGGSNGIPSPTTTRYLSAMSVAKGVVTLTGQESLNGLGVTLTPTWDNAEGVTGW
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCCEEEECCCCCCCCCCHH
QRVCTITGNSALQQACEDVFRVK
HHHEEECCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7959070; 8202364; 9278503 [H]