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The map label for this gene is hofC [H]

Identifier: 238893085

GI number: 238893085

Start: 911713

End: 912918

Strand: Reverse

Name: hofC [H]

Synonym: KP1_0929

Alternate gene names: 238893085

Gene position: 912918-911713 (Counterclockwise)

Preceding gene: 238893086

Following gene: 238893082

Centisome position: 17.39

GC content: 63.35

Gene sequence:

>1206_bases
ATGGCGACTAAGCGTCTCTGGCGCTGGCGCGGTATTGATGTGCAGGGCGCCCCTTGTCAGGGGATGCTATGGCAAACCAA
GCGTCTGGAGGTCCTGCAGCACCTCCAACAGCAGCGAGTTATACCGCTGGCCGTACGCCGCTGTGCGGTGAAGCAGAGCC
TCTGGCACCCGCGCTACAGTTGCGAAACGATCCGCCAGCTGGCGACCCTGCTGCAGGCCGGCCTGCCGCTGGCGGAAGGG
TTATCGCTGCTGGCGCAGCAGCAGTCGCATGCCCAGTGGCAGGCGCTGCTTGAGGCGCTGGGCCGCGAGCTGGCCCAAGG
CGTGGCGTTCTCTGCCGCGCTGGCGCAGTGGCCCCAGGCTTTTCCGCCCCTATATCTGGCGATGATTAGCACCGGCGAAC
TGACGGGCAAGCTCGATATCTGCTGCCTGCAGTTGGCGAATCAGCAGCAGGAGCAGCAGCGGCTCGCCAGCAAAGTCAAA
AAAGCGCTGCGCTACCCGCTGATCGTGCTCTCTCTGGCGCTGTTGGTGGTGCTGGGGATGCTCTATTTTGTCCTGCCCGA
GTTCACCGCCATCTACCAGACGTTCAGTACGCCGCTACCGCTATTGACGCGGATGGTCGTTGCGGCAGGCGACATGCTAA
GTCGCGGCTGGCCGCTGCTGCTGGCCTCGCTGCTGAGCCCGCTGCTGCTCAACCAGCTGATCCGGCGGCGCAGCGACTGG
TTGCTGCGCCGCCAGCGGTTGCTTAACGCGCTCCCTCTCATTGGCTCCCTGATCGGCGGACAACAGCTGAGCCTGATCTT
CACCATCCTGGCGTTAACCCAAAGCGCCGGTATTAGCTTTCTGCAGGGGCTGCAAAGCGTTGAAGAGTCCCTGTCGTGCC
CGCTATGGCGCCAGCGTCTGGCGCAGGCCCGCGCGCTGATCGTTCAGGGGGAGCCGATTTGGCAGGCGTTAAGCCGCTGC
GGCGGTTTTACACCGCTGTGCCTGCAGCTCATCCGCACGGGGGAAAGCGCGGGAGCGCTGGATCAGATGCTGGAAAACCT
GGCGCATCACCATCGCCAGCAAACCTATCAGCGAGCCGATAGTCTGGCTGCGCATCTTGAACCCATGATGCTGGTGATAA
CCGGCTCGCTGGTCGGGATTCTGGTGGTGGCAATGTATTTGCCCGTTTTTCACCTGGGCGATGCCATTGGCGGGGCGGGA
GGATGA

Upstream 100 bases:

>100_bases
CGAGCCGCAGGGATGATGACGCTTTTTGAAAGCGGCTGTCAGGCTATCGAACAGGGATTGACCAGCCTCGAAGAGGTGGT
GCGGGTGCTGGGGATCCCCC

Downstream 100 bases:

>100_bases
GAAACACTGGCGCCGCGCAGGCGCCAGCGCAGCCGATTACAGGCTATTGAATACCCGGTTCTCTTGTTCCTGAACGCGGA
TAAAGGTCGTACGCTTGGTC

Product: type IV pilin biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MATKRLWRWRGIDVQGAPCQGMLWQTKRLEVLQHLQQQRVIPLAVRRCAVKQSLWHPRYSCETIRQLATLLQAGLPLAEG
LSLLAQQQSHAQWQALLEALGRELAQGVAFSAALAQWPQAFPPLYLAMISTGELTGKLDICCLQLANQQQEQQRLASKVK
KALRYPLIVLSLALLVVLGMLYFVLPEFTAIYQTFSTPLPLLTRMVVAAGDMLSRGWPLLLASLLSPLLLNQLIRRRSDW
LLRRQRLLNALPLIGSLIGGQQLSLIFTILALTQSAGISFLQGLQSVEESLSCPLWRQRLAQARALIVQGEPIWQALSRC
GGFTPLCLQLIRTGESAGALDQMLENLAHHHRQQTYQRADSLAAHLEPMMLVITGSLVGILVVAMYLPVFHLGDAIGGAG
G

Sequences:

>Translated_401_residues
MATKRLWRWRGIDVQGAPCQGMLWQTKRLEVLQHLQQQRVIPLAVRRCAVKQSLWHPRYSCETIRQLATLLQAGLPLAEG
LSLLAQQQSHAQWQALLEALGRELAQGVAFSAALAQWPQAFPPLYLAMISTGELTGKLDICCLQLANQQQEQQRLASKVK
KALRYPLIVLSLALLVVLGMLYFVLPEFTAIYQTFSTPLPLLTRMVVAAGDMLSRGWPLLLASLLSPLLLNQLIRRRSDW
LLRRQRLLNALPLIGSLIGGQQLSLIFTILALTQSAGISFLQGLQSVEESLSCPLWRQRLAQARALIVQGEPIWQALSRC
GGFTPLCLQLIRTGESAGALDQMLENLAHHHRQQTYQRADSLAAHLEPMMLVITGSLVGILVVAMYLPVFHLGDAIGGAG
G
>Mature_400_residues
ATKRLWRWRGIDVQGAPCQGMLWQTKRLEVLQHLQQQRVIPLAVRRCAVKQSLWHPRYSCETIRQLATLLQAGLPLAEGL
SLLAQQQSHAQWQALLEALGRELAQGVAFSAALAQWPQAFPPLYLAMISTGELTGKLDICCLQLANQQQEQQRLASKVKK
ALRYPLIVLSLALLVVLGMLYFVLPEFTAIYQTFSTPLPLLTRMVVAAGDMLSRGWPLLLASLLSPLLLNQLIRRRSDWL
LRRQRLLNALPLIGSLIGGQQLSLIFTILALTQSAGISFLQGLQSVEESLSCPLWRQRLAQARALIVQGEPIWQALSRCG
GFTPLCLQLIRTGESAGALDQMLENLAHHHRQQTYQRADSLAAHLEPMMLVITGSLVGILVVAMYLPVFHLGDAIGGAGG

Specific function: Unknown

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1786295, Length=401, Percent_Identity=56.857855361596, Blast_Score=435, Evalue=1e-123,
Organism=Escherichia coli, GI1789724, Length=398, Percent_Identity=28.391959798995, Blast_Score=145, Evalue=4e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 44397; Mature: 44266

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKRLWRWRGIDVQGAPCQGMLWQTKRLEVLQHLQQQRVIPLAVRRCAVKQSLWHPRYS
CCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC
CETIRQLATLLQAGLPLAEGLSLLAQQQSHAQWQALLEALGRELAQGVAFSAALAQWPQA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FPPLYLAMISTGELTGKLDICCLQLANQQQEQQRLASKVKKALRYPLIVLSLALLVVLGM
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYFVLPEFTAIYQTFSTPLPLLTRMVVAAGDMLSRGWPLLLASLLSPLLLNQLIRRRSDW
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
LLRRQRLLNALPLIGSLIGGQQLSLIFTILALTQSAGISFLQGLQSVEESLSCPLWRQRL
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHH
AQARALIVQGEPIWQALSRCGGFTPLCLQLIRTGESAGALDQMLENLAHHHRQQTYQRAD
HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SLAAHLEPMMLVITGSLVGILVVAMYLPVFHLGDAIGGAGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ATKRLWRWRGIDVQGAPCQGMLWQTKRLEVLQHLQQQRVIPLAVRRCAVKQSLWHPRYS
CCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC
CETIRQLATLLQAGLPLAEGLSLLAQQQSHAQWQALLEALGRELAQGVAFSAALAQWPQA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FPPLYLAMISTGELTGKLDICCLQLANQQQEQQRLASKVKKALRYPLIVLSLALLVVLGM
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYFVLPEFTAIYQTFSTPLPLLTRMVVAAGDMLSRGWPLLLASLLSPLLLNQLIRRRSDW
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
LLRRQRLLNALPLIGSLIGGQQLSLIFTILALTQSAGISFLQGLQSVEESLSCPLWRQRL
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHH
AQARALIVQGEPIWQALSRCGGFTPLCLQLIRTGESAGALDQMLENLAHHHRQQTYQRAD
HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SLAAHLEPMMLVITGSLVGILVVAMYLPVFHLGDAIGGAGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7959070; 8202364; 9278503; 2904262 [H]