| Definition | Klebsiella pneumoniae NTUH-K2044 chromosome, complete genome. |
|---|---|
| Accession | NC_012731 |
| Length | 5,248,520 |
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The map label for this gene is pgaB [H]
Identifier: 238892603
GI number: 238892603
Start: 389846
End: 391867
Strand: Reverse
Name: pgaB [H]
Synonym: KP1_0382
Alternate gene names: 238892603
Gene position: 391867-389846 (Counterclockwise)
Preceding gene: 238892604
Following gene: 238892602
Centisome position: 7.47
GC content: 61.62
Gene sequence:
>2022_bases ATGACCATGCTGAACACGACCCTGCGCAACGGCCTGATGCTTCTCATCTGGCTGTGCCTTATCTTCAGCGTGCGTGCTGA GGAAGTCCCCTTCCTCGCCCCGCAGCAGCGCCCCCAACTGGAGGCCAATCAACCCTGGCCGGCGGATCGCTTTCTGGTGC TGGCCTACCATGACGTCGAAGACGATGCCGCCGACCAGCGTTATCTTTCGGTGCGCACCAGCGCACTCAATGAGCAGATC GCCTGGCTGCTGCATAACGGCTACCATGCGATTAGCGTTCAGGACATTCTCGATGCGCATTATGGCTTAAAGTCGCTGCC GCCCAAGGCTTTTCTCCTCAGTTTTGACGATGGTTACAGCAGCTTTTACACCCGCGTCTGGCCGCTGCTTAAAGCCTGGA ACGTCCCGGCGCTGTGGGCGCCGGTGGGCAGCTGGGTGGACACTCCCGCTGGTCAGCCCGTTAATTTTGGCGGCCTGATG ACGCCGCGCGAGCGCTTCGCTACCTGGGAGATGGTGCGCGAGCTCAGCCGCTCGCCGCTGGTGGAGATCGGCGCTCACAC CTGGGCCTCGCACTACGGTCTGCCGGCCAATCCGCAGGGCAGCCGCGAGCCTGCCGCCGCCAACCGCGGCTGGGATAAAA CCACCGGCCGCTATGAAAGCGACGCGCAGTTTACCCGGCGAATGACCGATGACGTGCAGAAAGTGACGGCGAAAATCCAT GAGGTTGCCGGGAAAACGCCGCGCGCCTGGGTGTGGCCCTACGGCGCCGCCAGCGGCAGCACCCTGACCATCGCCAAACA GCAAGGGTATCAGCTGGCGTTTACGCTGAACGACGGCCTGGGCAACGTGAAGGATCTGGACAATATTCCACGCCTGCTGA TCGCCGGTAACCCGTCGCTCAAGGCCTTTGCCAGCGCCGTGACCCAGATTCAGGAAGCCGATCCTGTTCGGGTGATGCAT GTGGATCTGGACTATGTCTATGACCCCAATCCCGTCCAGCAGGCAAAGAATATCGATAAGCTGGTGCAGCGCGTCTATGA CATGAAAATCAGCCACGTCTTTCTGCAGGCCTTCTCCGACCCGCAGGGCGACGGCACGGTCAAGTCGCTCTATTTCCCCA ACCGCTGGCTGCCGATGCGCGCCGACCTGTTTAACTTCGTCTCCTGGCAGTTGCAGACCCGCGGCAATGTGAAGGTTTAT GCCTGGATGCCGGTGCTGGCCTTCGATCTTGCCTCAGATCTGCCGCGCGTTCAGCGCTGGGATCCGCAAACCGGGAAGGC GTTACTTGCCCGCCAGCCGTACGTCCGTCTGTCGCCCTGGGATCCCCGGGTTCGCCAGCAGATCACCGACATCTACGAAG ATCTGGCCCGACACGCCAGCTTCAGCGGGATTCTGTTTCACGACGACGCCGTGCTGACCGATTTTGAAGACGTGAGCCCG GAGGCGGTCGCCGCCTGGCGGCAGACGGGTCTGGGGCACGATGCCGCCCCGGTGCCCCAACGTCCGCAAGAGCGCCAGGC ATGGATGCGTTTCAAAAGCCAAACCCTGACCCGCTTCACTCTGGATCTACGCCAGGCAGTGCAGGCCATCCGCGGCCCGC AGGTGAAAACGGCGCGTAATCTCTTCGCCCTGCCGATCCTGGAGTCGCAAAGCGAAGCCTGGTTTGCGCAGAACCTGGAT GACTTCCTTGCCGCCTATGACTGGACGGTCCCCATGGCGATGCCGCTGATGGAGTCCGTGCCGATCGACGCCAGCCAGGC CTGGCTGACGCGGCTGGTGCAGGCCGTCGCCCGCCACCCGGGCGCGCTGAAGAAAACCATCTTTGAACTGCAGGCCAGAG ACTGGAATCGACGCCAGCAAAACGCCATTCCCGACCAGCAGCTGGCGGACTGGATGCGTTTGCTGCGGCTGAACGGCGTC AAAAACTACGGCTACTACCCTGACGATTTTATTAACAACCAGCCTGATATCTCTCGTATCAGGCCGCAATTTTCTTCCTG GTGGTACCCTGACCATGACTGA
Upstream 100 bases:
>100_bases TCGACACCGGGCTGATGCTGAACTGGGATAAGCGCCCCTACGACAGCAAACGTGAAAACAACCTCGCCATCACTCTTGAT GCAAATATACGGTTTTAAGG
Downstream 100 bases:
>100_bases TCGCATTATCGCATTGTGCATTTTATGCCTCGTATTCGGGCTGCCGTTAGGTGTCGCAGCGGTATTTACCGGCGAGCTTA TCCTCGACTTTGTCTTTTTC
Product: outer membrane N-deacetylase
Products: NA
Alternate protein names: PGA N-deacetylase; Poly-beta-1,6-GlcNAc N-deacetylase [H]
Number of amino acids: Translated: 673; Mature: 672
Protein sequence:
>673_residues MTMLNTTLRNGLMLLIWLCLIFSVRAEEVPFLAPQQRPQLEANQPWPADRFLVLAYHDVEDDAADQRYLSVRTSALNEQI AWLLHNGYHAISVQDILDAHYGLKSLPPKAFLLSFDDGYSSFYTRVWPLLKAWNVPALWAPVGSWVDTPAGQPVNFGGLM TPRERFATWEMVRELSRSPLVEIGAHTWASHYGLPANPQGSREPAAANRGWDKTTGRYESDAQFTRRMTDDVQKVTAKIH EVAGKTPRAWVWPYGAASGSTLTIAKQQGYQLAFTLNDGLGNVKDLDNIPRLLIAGNPSLKAFASAVTQIQEADPVRVMH VDLDYVYDPNPVQQAKNIDKLVQRVYDMKISHVFLQAFSDPQGDGTVKSLYFPNRWLPMRADLFNFVSWQLQTRGNVKVY AWMPVLAFDLASDLPRVQRWDPQTGKALLARQPYVRLSPWDPRVRQQITDIYEDLARHASFSGILFHDDAVLTDFEDVSP EAVAAWRQTGLGHDAAPVPQRPQERQAWMRFKSQTLTRFTLDLRQAVQAIRGPQVKTARNLFALPILESQSEAWFAQNLD DFLAAYDWTVPMAMPLMESVPIDASQAWLTRLVQAVARHPGALKKTIFELQARDWNRRQQNAIPDQQLADWMRLLRLNGV KNYGYYPDDFINNQPDISRIRPQFSSWWYPDHD
Sequences:
>Translated_673_residues MTMLNTTLRNGLMLLIWLCLIFSVRAEEVPFLAPQQRPQLEANQPWPADRFLVLAYHDVEDDAADQRYLSVRTSALNEQI AWLLHNGYHAISVQDILDAHYGLKSLPPKAFLLSFDDGYSSFYTRVWPLLKAWNVPALWAPVGSWVDTPAGQPVNFGGLM TPRERFATWEMVRELSRSPLVEIGAHTWASHYGLPANPQGSREPAAANRGWDKTTGRYESDAQFTRRMTDDVQKVTAKIH EVAGKTPRAWVWPYGAASGSTLTIAKQQGYQLAFTLNDGLGNVKDLDNIPRLLIAGNPSLKAFASAVTQIQEADPVRVMH VDLDYVYDPNPVQQAKNIDKLVQRVYDMKISHVFLQAFSDPQGDGTVKSLYFPNRWLPMRADLFNFVSWQLQTRGNVKVY AWMPVLAFDLASDLPRVQRWDPQTGKALLARQPYVRLSPWDPRVRQQITDIYEDLARHASFSGILFHDDAVLTDFEDVSP EAVAAWRQTGLGHDAAPVPQRPQERQAWMRFKSQTLTRFTLDLRQAVQAIRGPQVKTARNLFALPILESQSEAWFAQNLD DFLAAYDWTVPMAMPLMESVPIDASQAWLTRLVQAVARHPGALKKTIFELQARDWNRRQQNAIPDQQLADWMRLLRLNGV KNYGYYPDDFINNQPDISRIRPQFSSWWYPDHD >Mature_672_residues TMLNTTLRNGLMLLIWLCLIFSVRAEEVPFLAPQQRPQLEANQPWPADRFLVLAYHDVEDDAADQRYLSVRTSALNEQIA WLLHNGYHAISVQDILDAHYGLKSLPPKAFLLSFDDGYSSFYTRVWPLLKAWNVPALWAPVGSWVDTPAGQPVNFGGLMT PRERFATWEMVRELSRSPLVEIGAHTWASHYGLPANPQGSREPAAANRGWDKTTGRYESDAQFTRRMTDDVQKVTAKIHE VAGKTPRAWVWPYGAASGSTLTIAKQQGYQLAFTLNDGLGNVKDLDNIPRLLIAGNPSLKAFASAVTQIQEADPVRVMHV DLDYVYDPNPVQQAKNIDKLVQRVYDMKISHVFLQAFSDPQGDGTVKSLYFPNRWLPMRADLFNFVSWQLQTRGNVKVYA WMPVLAFDLASDLPRVQRWDPQTGKALLARQPYVRLSPWDPRVRQQITDIYEDLARHASFSGILFHDDAVLTDFEDVSPE AVAAWRQTGLGHDAAPVPQRPQERQAWMRFKSQTLTRFTLDLRQAVQAIRGPQVKTARNLFALPILESQSEAWFAQNLDD FLAAYDWTVPMAMPLMESVPIDASQAWLTRLVQAVARHPGALKKTIFELQARDWNRRQQNAIPDQQLADWMRLLRLNGVK NYGYYPDDFINNQPDISRIRPQFSSWWYPDHD
Specific function: Catalyzes the N-deacetylation of poly-beta-1,6-N-acetyl- D-glucosamine (PGA), a biofilm adhesin polysaccharide. N- deacetylation promotes PGA export through the PgaA porin [H]
COG id: COG0726
COG function: function code G; Predicted xylanase/chitin deacetylase
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor; Periplasmic side [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the polysaccharide deacetylase family [H]
Homologues:
Organism=Escherichia coli, GI1787260, Length=671, Percent_Identity=52.9061102831595, Blast_Score=726, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011330 - InterPro: IPR002509 [H]
Pfam domain/function: PF01522 Polysacc_deac_1 [H]
EC number: NA
Molecular weight: Translated: 76822; Mature: 76691
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMLNTTLRNGLMLLIWLCLIFSVRAEEVPFLAPQQRPQLEANQPWPADRFLVLAYHDVE CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC DDAADQRYLSVRTSALNEQIAWLLHNGYHAISVQDILDAHYGLKSLPPKAFLLSFDDGYS CCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHCCHHCCCCCEEEEEECCCHH SFYTRVWPLLKAWNVPALWAPVGSWVDTPAGQPVNFGGLMTPRERFATWEMVRELSRSPL HHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC VEIGAHTWASHYGLPANPQGSREPAAANRGWDKTTGRYESDAQFTRRMTDDVQKVTAKIH EEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH EVAGKTPRAWVWPYGAASGSTLTIAKQQGYQLAFTLNDGLGNVKDLDNIPRLLIAGNPSL HHHCCCCCEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHCCCEEEEECCCCH KAFASAVTQIQEADPVRVMHVDLDYVYDPNPVQQAKNIDKLVQRVYDMKISHVFLQAFSD HHHHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PQGDGTVKSLYFPNRWLPMRADLFNFVSWQLQTRGNVKVYAWMPVLAFDLASDLPRVQRW CCCCCCEEEEECCCCCCCHHHHHHHHHHHEEECCCCEEEEEEHHHHHHHHHHCCCHHHCC DPQTGKALLARQPYVRLSPWDPRVRQQITDIYEDLARHASFSGILFHDDAVLTDFEDVSP CCCCCCCHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHCCH EAVAAWRQTGLGHDAAPVPQRPQERQAWMRFKSQTLTRFTLDLRQAVQAIRGPQVKTARN HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHC LFALPILESQSEAWFAQNLDDFLAAYDWTVPMAMPLMESVPIDASQAWLTRLVQAVARHP EEEEEEECCCCHHHHHHCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC GALKKTIFELQARDWNRRQQNAIPDQQLADWMRLLRLNGVKNYGYYPDDFINNQPDISRI CHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCHHHH RPQFSSWWYPDHD CHHHHCCCCCCCC >Mature Secondary Structure TMLNTTLRNGLMLLIWLCLIFSVRAEEVPFLAPQQRPQLEANQPWPADRFLVLAYHDVE CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC DDAADQRYLSVRTSALNEQIAWLLHNGYHAISVQDILDAHYGLKSLPPKAFLLSFDDGYS CCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHCCHHCCCCCEEEEEECCCHH SFYTRVWPLLKAWNVPALWAPVGSWVDTPAGQPVNFGGLMTPRERFATWEMVRELSRSPL HHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC VEIGAHTWASHYGLPANPQGSREPAAANRGWDKTTGRYESDAQFTRRMTDDVQKVTAKIH EEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH EVAGKTPRAWVWPYGAASGSTLTIAKQQGYQLAFTLNDGLGNVKDLDNIPRLLIAGNPSL HHHCCCCCEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHCCCEEEEECCCCH KAFASAVTQIQEADPVRVMHVDLDYVYDPNPVQQAKNIDKLVQRVYDMKISHVFLQAFSD HHHHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PQGDGTVKSLYFPNRWLPMRADLFNFVSWQLQTRGNVKVYAWMPVLAFDLASDLPRVQRW CCCCCCEEEEECCCCCCCHHHHHHHHHHHEEECCCCEEEEEEHHHHHHHHHHCCCHHHCC DPQTGKALLARQPYVRLSPWDPRVRQQITDIYEDLARHASFSGILFHDDAVLTDFEDVSP CCCCCCCHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHCCH EAVAAWRQTGLGHDAAPVPQRPQERQAWMRFKSQTLTRFTLDLRQAVQAIRGPQVKTARN HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHC LFALPILESQSEAWFAQNLDDFLAAYDWTVPMAMPLMESVPIDASQAWLTRLVQAVARHP EEEEEEECCCCHHHHHHCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC GALKKTIFELQARDWNRRQQNAIPDQQLADWMRLLRLNGVKNYGYYPDDFINNQPDISRI CHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCHHHH RPQFSSWWYPDHD CHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]