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The map label for this gene is rci [H]

Identifier: 238028289

GI number: 238028289

Start: 3117004

End: 3118104

Strand: Reverse

Name: rci [H]

Synonym: bglu_1g27460

Alternate gene names: 238028289

Gene position: 3118104-3117004 (Counterclockwise)

Preceding gene: 238028297

Following gene: 238028282

Centisome position: 79.82

GC content: 60.76

Gene sequence:

>1101_bases
GTGGCATCGATCATCAAGGTTGGCAATCGCTGGCGGGCTCAAGTCCGCCGGCAGGGGCACAAGAGTACAGCAAAGACGTT
CGGAACGAAAGGTGCCGCCGAGGCTTGGGCTCGGGAAATCGAGACAGCGATCGACAAGGGCGTGCGTGCGGTTGATGAAT
CGAGCGTCACGGTCGGCGAGCTGGTACGACAGTATCGTCAGGCCCGCCAGGATTCCGGCCGTGGGATCGTCGAGAGATCG
AACGAGCACTACATGCTCGCGCGGCTCGAAAGGTACTTTGACGATGAAGTCGCGATCAAGCTGTCGACGCAGCGGCTGGT
GAGGTTTGCCCAAGAGCGAAAGAAGGAAGGCGCTGGCCAGTACACCATCGACATGGACATTTCCAAGCTCGGCACCGTCT
TCAAGCATATGGCATCGCTACTCGATCTGCGGTTGCCGCACGCGCCGAGCATCGCCCGGCCGACGTTGAATCATCTCCAA
CTGGTCGGCCCAGGCGGGCATCGCGATCGTAGACCGACTCGCGAGGAGATACAGAAGATTTTCGACTGGTTCGCGGAGCA
CCCGGAGCGCGAGCAGGCCGTGCCGGATGTCATCCGGATCGCCATGAAAAGCGCGTTCCGCCGTGGCGAGTTGTTCCGGC
TGACGTGGTCGGATCTCGACGTCGAAAAGCGCTTGGCCCTCGTGCGAGATCGGAAGCACCCAAGGCAGAAGAAGGGCAAC
AACGAGTGGGTGCCGCTGATCGGGGATTCGCTCGAAGTCTTGCTGCGGCAGCCACGGTATCCGGTGCCGCCCGACTACGA
GATGCGGCGTGCCGCCGATCCTGCTTGCCCGCCTCACGCGAATGAGTACATCTTCCGGTTCGACAAGAGTCTGGCCAGCA
AGTATTTCAAGATGGCGTGTGACGCCAAGGGCATCGTCGATTTGCGACTACATGACTTGCGGCACGAGGCCACGAGCGCA
CTCTTTGAGGGTGGATGGGATATTCCGGAGGTGGCAACCGTGACCGGACACAAAGACTGGCGCAACCTCAAGCGGTACAC
GAATCTGCGGCCGGATGAGGTTGCCAAGAAAGGGCAGTTGAAGATGGCGGGTGGGCAGTGA

Upstream 100 bases:

>100_bases
ATACAGAGTTTAACGGCCGCTCTGCTACACTTTTGCTACAAATCACCGCTGTAGCATGCCTCTCTAACGCCGCATTGCTA
CAGTTTCTAAGGGGTAGCGT

Downstream 100 bases:

>100_bases
CAGGCGGGGCTACTTCCCCGCTCCTCGGCGTTGCTTGATCCAGCGCGCGGTACGCAGGGCGCTGGCGCCGGGGAAGGGCA
CGCGGTGCGCCCGCTTTACC

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 365

Protein sequence:

>366_residues
MASIIKVGNRWRAQVRRQGHKSTAKTFGTKGAAEAWAREIETAIDKGVRAVDESSVTVGELVRQYRQARQDSGRGIVERS
NEHYMLARLERYFDDEVAIKLSTQRLVRFAQERKKEGAGQYTIDMDISKLGTVFKHMASLLDLRLPHAPSIARPTLNHLQ
LVGPGGHRDRRPTREEIQKIFDWFAEHPEREQAVPDVIRIAMKSAFRRGELFRLTWSDLDVEKRLALVRDRKHPRQKKGN
NEWVPLIGDSLEVLLRQPRYPVPPDYEMRRAADPACPPHANEYIFRFDKSLASKYFKMACDAKGIVDLRLHDLRHEATSA
LFEGGWDIPEVATVTGHKDWRNLKRYTNLRPDEVAKKGQLKMAGGQ

Sequences:

>Translated_366_residues
MASIIKVGNRWRAQVRRQGHKSTAKTFGTKGAAEAWAREIETAIDKGVRAVDESSVTVGELVRQYRQARQDSGRGIVERS
NEHYMLARLERYFDDEVAIKLSTQRLVRFAQERKKEGAGQYTIDMDISKLGTVFKHMASLLDLRLPHAPSIARPTLNHLQ
LVGPGGHRDRRPTREEIQKIFDWFAEHPEREQAVPDVIRIAMKSAFRRGELFRLTWSDLDVEKRLALVRDRKHPRQKKGN
NEWVPLIGDSLEVLLRQPRYPVPPDYEMRRAADPACPPHANEYIFRFDKSLASKYFKMACDAKGIVDLRLHDLRHEATSA
LFEGGWDIPEVATVTGHKDWRNLKRYTNLRPDEVAKKGQLKMAGGQ
>Mature_365_residues
ASIIKVGNRWRAQVRRQGHKSTAKTFGTKGAAEAWAREIETAIDKGVRAVDESSVTVGELVRQYRQARQDSGRGIVERSN
EHYMLARLERYFDDEVAIKLSTQRLVRFAQERKKEGAGQYTIDMDISKLGTVFKHMASLLDLRLPHAPSIARPTLNHLQL
VGPGGHRDRRPTREEIQKIFDWFAEHPEREQAVPDVIRIAMKSAFRRGELFRLTWSDLDVEKRLALVRDRKHPRQKKGNN
EWVPLIGDSLEVLLRQPRYPVPPDYEMRRAADPACPPHANEYIFRFDKSLASKYFKMACDAKGIVDLRLHDLRHEATSAL
FEGGWDIPEVATVTGHKDWRNLKRYTNLRPDEVAKKGQLKMAGGQ

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 42063; Mature: 41931

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASIIKVGNRWRAQVRRQGHKSTAKTFGTKGAAEAWAREIETAIDKGVRAVDESSVTVGE
CCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
LVRQYRQARQDSGRGIVERSNEHYMLARLERYFDDEVAIKLSTQRLVRFAQERKKEGAGQ
HHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHCCCHHEEEECHHHHHHHHHHHHHCCCCC
YTIDMDISKLGTVFKHMASLLDLRLPHAPSIARPTLNHLQLVGPGGHRDRRPTREEIQKI
EEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEECCCCCCCCCCCHHHHHHH
FDWFAEHPEREQAVPDVIRIAMKSAFRRGELFRLTWSDLDVEKRLALVRDRKHPRQKKGN
HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHCCC
NEWVPLIGDSLEVLLRQPRYPVPPDYEMRRAADPACPPHANEYIFRFDKSLASKYFKMAC
CCEECCCCHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
DAKGIVDLRLHDLRHEATSALFEGGWDIPEVATVTGHKDWRNLKRYTNLRPDEVAKKGQL
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHEECCCHHHHHHHHHCCCCHHHHHHCCCE
KMAGGQ
ECCCCC
>Mature Secondary Structure 
ASIIKVGNRWRAQVRRQGHKSTAKTFGTKGAAEAWAREIETAIDKGVRAVDESSVTVGE
CCHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
LVRQYRQARQDSGRGIVERSNEHYMLARLERYFDDEVAIKLSTQRLVRFAQERKKEGAGQ
HHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHCCCHHEEEECHHHHHHHHHHHHHCCCCC
YTIDMDISKLGTVFKHMASLLDLRLPHAPSIARPTLNHLQLVGPGGHRDRRPTREEIQKI
EEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEECCCCCCCCCCCHHHHHHH
FDWFAEHPEREQAVPDVIRIAMKSAFRRGELFRLTWSDLDVEKRLALVRDRKHPRQKKGN
HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHCCC
NEWVPLIGDSLEVLLRQPRYPVPPDYEMRRAADPACPPHANEYIFRFDKSLASKYFKMAC
CCEECCCCHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
DAKGIVDLRLHDLRHEATSALFEGGWDIPEVATVTGHKDWRNLKRYTNLRPDEVAKKGQL
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHEECCCHHHHHHHHHCCCCHHHHHHCCCE
KMAGGQ
ECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]