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The map label for this gene is traC [H]

Identifier: 238028280

GI number: 238028280

Start: 3107307

End: 3109808

Strand: Reverse

Name: traC [H]

Synonym: bglu_1g27370

Alternate gene names: 238028280

Gene position: 3109808-3107307 (Counterclockwise)

Preceding gene: 238028281

Following gene: 238028279

Centisome position: 79.61

GC content: 64.87

Gene sequence:

>2502_bases
ATGTCGTCGCTAGACCAGATTCGCGCGCAGTTGGCGGCAGCGGGTCATCCTGAGCTGCCTGTCGGACACCCCGTTGCGGA
CGGCAAGCACCATCGATACGGTCCCCGCAAGAAGTATTGGTATCAACTGCGCGAAGTCGTGAGCAAGGGCGCCGTCATCG
GCTACTCGGGCACCTACGGCTATTTCTCCGGCGACGATCCCGGCACCGAGCGGTTCCAGTGGGCCGGTGCGCCCCTGAGC
GACGAGGTGCTTGCCGAAACGCGGCGCCGCCAGGAAGCGGCCGAGCGCGAGGAGAGCGAGCGGGCGGCACGTCAGGCGCA
ACTAGCGGCCAACCGCGCACGCAGCCAGTGGGATCGAGCAAGCGACGTTGGTGCATCCGCCTATCTGCAGCGCAAACAGA
TCACGCCCGAGGGCGTGCGGTTCGACGCGGACGGCACGATGTTCGTCCCGATGTACCGCTATGAAGCCGAGGGGCGGCTC
GTCGGTCTGCAGAAGATCACGCCGAACGGCGAGAAGCGCTACAACAAAGGCATGGAGAAGAGGGGCGCCAGCCGGCTGCT
CGGCAGCATCGGCGCCGAGGACAAGATGGTGCTGGTCGCCGAGGGGTACGCCACCGGACGTTCGATCCGTATGGCGACGC
GTGAAGCCTTCGCGGTGTCCGTCTGCTTCGACGCGGCCGGCATCCAGTCGGCGGTGCAGGGGCTGCGTGCAGCCTTCCCG
GCGGTTCATATTCTGGTGTGCGCCGACGACGACTGGAAGATCGAGCAGCGCCTTCGCGAATGGCTCGTCGAGGAGTTTGG
GTTTCGCGGCGAGCTGACATACGGCGCATCGCCGATCAAGGTCGAGGCGAAGAACACGTGGTACATGCTGGCCGCGCACA
AGCGTGTCGACGACAACGGCGTGCAATTCGTCGAGGCGACGTACGGCAACGACGTGATGCCGCTGCGTCGTAAGCGCTTC
GAAAACACGGGCCTTAAACGCGCTCACGAGGCGGCAGCCGCGGTCGACGGCGCGTCGGTCACGTATCCGACGTTCGCCGA
TCGAGGCGATCGGAAGCTGACCGACTTCAACGATCTGCACGTCGAGGAAGGGCTGGAAGCCGTCGAGCGGCAATTGCATG
CGGCGATTCGGGCCGTCCTCGCGCCAGCCGATGACGAGCAGCAGCCCGCCGAGGTCGTGCCTGCCGAGCGCGCGATGCAG
CCGGCCGCGACGTCCGCTGCCGCAGAGGAGCGGGAGTGGGACGGACGCGAAGCGGAGAACGGTGCCTTCACCTGGGAGGA
GAGCCTTGCGAGATCGGACAAGGGCACGCTGCTGCCGACGCTTGGCAACGTCCATCTGATCCTGTCGAACCATGCGGAGT
GGCGCGGTGTCATCGCCCAGGATGATTTTGCCGGTCGGGTGGTCAAGCGTCGCGTGCCGCCGTTCGGGCAGGGAGCGCTG
GGTGAATGGACCGACATGGATGACCATCGCAGCACGCTCTGGTTGTCGCAGAAGTATGGCCTGAACGTTCGGCCAGACAT
CGTCATGAACGCTGTCTTGCTCGTTGCCGATGCCACGCATTTTCACGACATACGCGAGTACCTGAACACCCTGGAATGGG
ATGGCGTCGAGCGCGTGAAGTCGATGCCCGCGACGTACCTGCACGTGGCCGACAGCGAATATGTCCAGTTGGCGTTCATG
AAGTGGATGATCGCCGCCGTCGCGCGTGTCATGCAGCCGGGCTGCAAGGTCGACAACGTCTTGATTCTCGAAGGGCGGCA
GGGCTGGCGGAAGTCGACGGCGCTGAAGGTGCTGGCCGGCAAGCAGTGGTTCACCGATACCCCGATCCAGATCGGCAACA
AGGATACGTACGCCGTCATGGCCGGCAAATGGATCATCGAGCTGGCCGAGCTGGATTCGCTCAACAAGACTGACTCGTCG
GCCGCCAAGAGCTTCTTCGCGACGGAGACGGACCGGTTCCGTAACTTCTACGGCAAGCGGGCCACCGACGTCCATCGTCA
GTGCGTGTTCGCGGGCTCGGTCAACTTCGATGCCTACCTGAAGGACGAGTCGGGTAACCGGCGGTACTGGCCGCTGCGTT
GCGGCGGTCTGGTCGATATTGACGGCATCGCACGCGCACGTGATCAGCTTTGGGCCGAGGCGGTCCACCTGTATCGGCAG
GGCGTGGTGTGGCACGTCACTGAGGCCGAGCGGCCCCTCTTTGAGGTCGAGCAGGCCGAGCGCTACGAGGGCGACGTGTA
CGAGGACGTGATCGGCAAGCAGATCGCGCATTCCAGCCGCACCACGATGGAGGAGATCCTGCGCGACGTGCTCAGGCTGG
ACTCGTCGAAATGGACGCTGCCCGAGCAGCGGCGTATCGGCAAGGCGCTGAAATCCCTTGGATGGGTGCGCAAGCGCGAG
TCGACCGGATCGCGCGGCTGGTACTACGTGCCGGATGAAGAGCAGGAGGCGGAGCCGGTGCTGGAGGCAGTGTGCGCGGG
CGACGACGACAGCCCGCTATGA

Upstream 100 bases:

>100_bases
TGCCGCTGCGTAAATCGATCGGCGTGAATGTCTATGCCGCTGGCCGTAAGGCTTGGCGTTCCACCCTGCATCAAATTGAA
CTGGAAAGGAGAATTGCGGA

Downstream 100 bases:

>100_bases
GCGAATGGCGCGCTGTGCCGGCATCTCCGGCGCGCTTTGTCGCCGGTCTTGGCGCGCTTGGGACGTCCCAATGTCCCAAC
GTCCCAAGAGCCCGCCTCGG

Product: virulence-associated E family protein

Products: NA

Alternate protein names: Replication primase [H]

Number of amino acids: Translated: 833; Mature: 832

Protein sequence:

>833_residues
MSSLDQIRAQLAAAGHPELPVGHPVADGKHHRYGPRKKYWYQLREVVSKGAVIGYSGTYGYFSGDDPGTERFQWAGAPLS
DEVLAETRRRQEAAEREESERAARQAQLAANRARSQWDRASDVGASAYLQRKQITPEGVRFDADGTMFVPMYRYEAEGRL
VGLQKITPNGEKRYNKGMEKRGASRLLGSIGAEDKMVLVAEGYATGRSIRMATREAFAVSVCFDAAGIQSAVQGLRAAFP
AVHILVCADDDWKIEQRLREWLVEEFGFRGELTYGASPIKVEAKNTWYMLAAHKRVDDNGVQFVEATYGNDVMPLRRKRF
ENTGLKRAHEAAAAVDGASVTYPTFADRGDRKLTDFNDLHVEEGLEAVERQLHAAIRAVLAPADDEQQPAEVVPAERAMQ
PAATSAAAEEREWDGREAENGAFTWEESLARSDKGTLLPTLGNVHLILSNHAEWRGVIAQDDFAGRVVKRRVPPFGQGAL
GEWTDMDDHRSTLWLSQKYGLNVRPDIVMNAVLLVADATHFHDIREYLNTLEWDGVERVKSMPATYLHVADSEYVQLAFM
KWMIAAVARVMQPGCKVDNVLILEGRQGWRKSTALKVLAGKQWFTDTPIQIGNKDTYAVMAGKWIIELAELDSLNKTDSS
AAKSFFATETDRFRNFYGKRATDVHRQCVFAGSVNFDAYLKDESGNRRYWPLRCGGLVDIDGIARARDQLWAEAVHLYRQ
GVVWHVTEAERPLFEVEQAERYEGDVYEDVIGKQIAHSSRTTMEEILRDVLRLDSSKWTLPEQRRIGKALKSLGWVRKRE
STGSRGWYYVPDEEQEAEPVLEAVCAGDDDSPL

Sequences:

>Translated_833_residues
MSSLDQIRAQLAAAGHPELPVGHPVADGKHHRYGPRKKYWYQLREVVSKGAVIGYSGTYGYFSGDDPGTERFQWAGAPLS
DEVLAETRRRQEAAEREESERAARQAQLAANRARSQWDRASDVGASAYLQRKQITPEGVRFDADGTMFVPMYRYEAEGRL
VGLQKITPNGEKRYNKGMEKRGASRLLGSIGAEDKMVLVAEGYATGRSIRMATREAFAVSVCFDAAGIQSAVQGLRAAFP
AVHILVCADDDWKIEQRLREWLVEEFGFRGELTYGASPIKVEAKNTWYMLAAHKRVDDNGVQFVEATYGNDVMPLRRKRF
ENTGLKRAHEAAAAVDGASVTYPTFADRGDRKLTDFNDLHVEEGLEAVERQLHAAIRAVLAPADDEQQPAEVVPAERAMQ
PAATSAAAEEREWDGREAENGAFTWEESLARSDKGTLLPTLGNVHLILSNHAEWRGVIAQDDFAGRVVKRRVPPFGQGAL
GEWTDMDDHRSTLWLSQKYGLNVRPDIVMNAVLLVADATHFHDIREYLNTLEWDGVERVKSMPATYLHVADSEYVQLAFM
KWMIAAVARVMQPGCKVDNVLILEGRQGWRKSTALKVLAGKQWFTDTPIQIGNKDTYAVMAGKWIIELAELDSLNKTDSS
AAKSFFATETDRFRNFYGKRATDVHRQCVFAGSVNFDAYLKDESGNRRYWPLRCGGLVDIDGIARARDQLWAEAVHLYRQ
GVVWHVTEAERPLFEVEQAERYEGDVYEDVIGKQIAHSSRTTMEEILRDVLRLDSSKWTLPEQRRIGKALKSLGWVRKRE
STGSRGWYYVPDEEQEAEPVLEAVCAGDDDSPL
>Mature_832_residues
SSLDQIRAQLAAAGHPELPVGHPVADGKHHRYGPRKKYWYQLREVVSKGAVIGYSGTYGYFSGDDPGTERFQWAGAPLSD
EVLAETRRRQEAAEREESERAARQAQLAANRARSQWDRASDVGASAYLQRKQITPEGVRFDADGTMFVPMYRYEAEGRLV
GLQKITPNGEKRYNKGMEKRGASRLLGSIGAEDKMVLVAEGYATGRSIRMATREAFAVSVCFDAAGIQSAVQGLRAAFPA
VHILVCADDDWKIEQRLREWLVEEFGFRGELTYGASPIKVEAKNTWYMLAAHKRVDDNGVQFVEATYGNDVMPLRRKRFE
NTGLKRAHEAAAAVDGASVTYPTFADRGDRKLTDFNDLHVEEGLEAVERQLHAAIRAVLAPADDEQQPAEVVPAERAMQP
AATSAAAEEREWDGREAENGAFTWEESLARSDKGTLLPTLGNVHLILSNHAEWRGVIAQDDFAGRVVKRRVPPFGQGALG
EWTDMDDHRSTLWLSQKYGLNVRPDIVMNAVLLVADATHFHDIREYLNTLEWDGVERVKSMPATYLHVADSEYVQLAFMK
WMIAAVARVMQPGCKVDNVLILEGRQGWRKSTALKVLAGKQWFTDTPIQIGNKDTYAVMAGKWIIELAELDSLNKTDSSA
AKSFFATETDRFRNFYGKRATDVHRQCVFAGSVNFDAYLKDESGNRRYWPLRCGGLVDIDGIARARDQLWAEAVHLYRQG
VVWHVTEAERPLFEVEQAERYEGDVYEDVIGKQIAHSSRTTMEEILRDVLRLDSSKWTLPEQRRIGKALKSLGWVRKRES
TGSRGWYYVPDEEQEAEPVLEAVCAGDDDSPL

Specific function: Required for autonomous replication in E.coli. Transferred into the recipient cell during bacterial conjugation. Catalyzes the synthesis of short oligoribonucleotide primers with CpA or pCpA at their 5'-termini on a single stranded template DNA [H]

COG id: COG5545

COG function: function code R; Predicted P-loop ATPase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013610
- InterPro:   IPR006171 [H]

Pfam domain/function: PF08401 DUF1738; PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 93528; Mature: 93397

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLDQIRAQLAAAGHPELPVGHPVADGKHHRYGPRKKYWYQLREVVSKGAVIGYSGTYG
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC
YFSGDDPGTERFQWAGAPLSDEVLAETRRRQEAAEREESERAARQAQLAANRARSQWDRA
CCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SDVGASAYLQRKQITPEGVRFDADGTMFVPMYRYEAEGRLVGLQKITPNGEKRYNKGMEK
HHCCHHHHHHHHCCCCCCEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHCCHHH
RGASRLLGSIGAEDKMVLVAEGYATGRSIRMATREAFAVSVCFDAAGIQSAVQGLRAAFP
HHHHHHHHHCCCCCCEEEEECCCCCCCEEEEHHHHHEEEEEHHHHHHHHHHHHHHHHHCC
AVHILVCADDDWKIEQRLREWLVEEFGFRGELTYGASPIKVEAKNTWYMLAAHKRVDDNG
EEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCEEEEEECCCCCCCC
VQFVEATYGNDVMPLRRKRFENTGLKRAHEAAAAVDGASVTYPTFADRGDRKLTDFNDLH
CEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCHHH
VEEGLEAVERQLHAAIRAVLAPADDEQQPAEVVPAERAMQPAATSAAAEEREWDGREAEN
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHCCCHHHHHHHHHHCCCCCCCCC
GAFTWEESLARSDKGTLLPTLGNVHLILSNHAEWRGVIAQDDFAGRVVKRRVPPFGQGAL
CCCCHHHHHHCCCCCCEEECCCCEEEEEECCCCCCEEEECCCHHHHHHHHCCCCCCCCCC
GEWTDMDDHRSTLWLSQKYGLNVRPDIVMNAVLLVADATHFHDIREYLNTLEWDGVERVK
CCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHH
SMPATYLHVADSEYVQLAFMKWMIAAVARVMQPGCKVDNVLILEGRQGWRKSTALKVLAG
HCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHEEEEEC
KQWFTDTPIQIGNKDTYAVMAGKWIIELAELDSLNKTDSSAAKSFFATETDRFRNFYGKR
CCCCCCCCCEECCCCEEEEEECHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
ATDVHRQCVFAGSVNFDAYLKDESGNRRYWPLRCGGLVDIDGIARARDQLWAEAVHLYRQ
HHHHHHHEEEECCCCCEEEEECCCCCCEEEEEECCCEEECHHHHHHHHHHHHHHHHHHHC
GVVWHVTEAERPLFEVEQAERYEGDVYEDVIGKQIAHSSRTTMEEILRDVLRLDSSKWTL
CCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PEQRRIGKALKSLGWVRKRESTGSRGWYYVPDEEQEAEPVLEAVCAGDDDSPL
CHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SSLDQIRAQLAAAGHPELPVGHPVADGKHHRYGPRKKYWYQLREVVSKGAVIGYSGTYG
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC
YFSGDDPGTERFQWAGAPLSDEVLAETRRRQEAAEREESERAARQAQLAANRARSQWDRA
CCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SDVGASAYLQRKQITPEGVRFDADGTMFVPMYRYEAEGRLVGLQKITPNGEKRYNKGMEK
HHCCHHHHHHHHCCCCCCEEECCCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHCCHHH
RGASRLLGSIGAEDKMVLVAEGYATGRSIRMATREAFAVSVCFDAAGIQSAVQGLRAAFP
HHHHHHHHHCCCCCCEEEEECCCCCCCEEEEHHHHHEEEEEHHHHHHHHHHHHHHHHHCC
AVHILVCADDDWKIEQRLREWLVEEFGFRGELTYGASPIKVEAKNTWYMLAAHKRVDDNG
EEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCEEEEEECCCCCCCC
VQFVEATYGNDVMPLRRKRFENTGLKRAHEAAAAVDGASVTYPTFADRGDRKLTDFNDLH
CEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCHHH
VEEGLEAVERQLHAAIRAVLAPADDEQQPAEVVPAERAMQPAATSAAAEEREWDGREAEN
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHCCCHHHHHHHHHHCCCCCCCCC
GAFTWEESLARSDKGTLLPTLGNVHLILSNHAEWRGVIAQDDFAGRVVKRRVPPFGQGAL
CCCCHHHHHHCCCCCCEEECCCCEEEEEECCCCCCEEEECCCHHHHHHHHCCCCCCCCCC
GEWTDMDDHRSTLWLSQKYGLNVRPDIVMNAVLLVADATHFHDIREYLNTLEWDGVERVK
CCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHH
SMPATYLHVADSEYVQLAFMKWMIAAVARVMQPGCKVDNVLILEGRQGWRKSTALKVLAG
HCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHEEEEEC
KQWFTDTPIQIGNKDTYAVMAGKWIIELAELDSLNKTDSSAAKSFFATETDRFRNFYGKR
CCCCCCCCCEECCCCEEEEEECHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
ATDVHRQCVFAGSVNFDAYLKDESGNRRYWPLRCGGLVDIDGIARARDQLWAEAVHLYRQ
HHHHHHHEEEECCCCCEEEEECCCCCCEEEEEECCCEEECHHHHHHHHHHHHHHHHHHHC
GVVWHVTEAERPLFEVEQAERYEGDVYEDVIGKQIAHSSRTTMEEILRDVLRLDSSKWTL
CCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PEQRRIGKALKSLGWVRKRESTGSRGWYYVPDEEQEAEPVLEAVCAGDDDSPL
CHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1818755 [H]