Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
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Accession | NC_012724 |
Length | 3,906,507 |
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The map label for this gene is 238028279
Identifier: 238028279
GI number: 238028279
Start: 3106315
End: 3107088
Strand: Reverse
Name: 238028279
Synonym: bglu_1g27360
Alternate gene names: NA
Gene position: 3107088-3106315 (Counterclockwise)
Preceding gene: 238028280
Following gene: 238028278
Centisome position: 79.54
GC content: 60.98
Gene sequence:
>774_bases ATGATCGATTTGAAGGAGCGGGCAGGTGTGGCAATGAGCGTGCGTGGTCAGTTCACCGATCCCATTGCCGATCCGAAAGT TACTTTGGGGGCACTCGCCTTTGCGAACGATCTCGGTCGTTTGCTGACTCGAATCAAGGCCGGCCCGCAAGCGACGCCTG CGATGATTCGACGAGCAACGTTGCTGTTGGCGCAGATGATCCGGACGTCCGGCAGGTTCAAGCGGGCGCGATTCACGGGC TATACACGCGATGAGCGTCGCGATCAGCGTTCGGGGCATGCTGTCGAGCGCGCAAACGTCGACATCGTCGAACGGTTCGC GCTGCGTTTGCTGGACGAGTGGGTGAACGATCAGTGTGTCGAGTGCGAGGGGCGCGGCGTGGTGCGTCGTGCGCGTGCCG TTACGACAGCAACGCATGCATGCGATTCATGTGGAGGAAGCGGAAAGGTGTGCGTGTCTGAGGAGCGCATTCCGTTCTTT GAAGGGCGTAGCGGGCCGGTTGTCTTTCGGGAATACGAACCATGCGACGACTGTGGCGGGATGGGCCGGATCGCGGCATC GCCTGTCGCGGATGCGAAGGGCCGGCACATTTGCCCTGAATGTTCAGGATCGGGGAAGCGGCAGATCGACGACGCTGGCC GAGCCCATGCACTCGGTATCTCGCTCATCGACTATCGCCGCAACTGGTCGTGGCGCTTCCACGACATGCTCGCGCTCCTC GATAGCGTCGATGGTTCGGTATCCGACACAATGCGTCGGCAATTGCGAGGATGA
Upstream 100 bases:
>100_bases GACGTGCGCGACGTAGGCAGCGCATGTCGCGCGGGCGCGCGCCCCTGCAAGCCTTTTTCTTTGGGACATTGGGACGTTGG GACGAATAGGAGAGAGTGAA
Downstream 100 bases:
>100_bases AACGTATTCCATTTCAAGAGCGGATCGCTTACACTCTGTATGTCCTTTACCGAGTCACTGGACACATGAGCGACCGCATA CTCGTGTCGCAACCTTCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 257; Mature: 257
Protein sequence:
>257_residues MIDLKERAGVAMSVRGQFTDPIADPKVTLGALAFANDLGRLLTRIKAGPQATPAMIRRATLLLAQMIRTSGRFKRARFTG YTRDERRDQRSGHAVERANVDIVERFALRLLDEWVNDQCVECEGRGVVRRARAVTTATHACDSCGGSGKVCVSEERIPFF EGRSGPVVFREYEPCDDCGGMGRIAASPVADAKGRHICPECSGSGKRQIDDAGRAHALGISLIDYRRNWSWRFHDMLALL DSVDGSVSDTMRRQLRG
Sequences:
>Translated_257_residues MIDLKERAGVAMSVRGQFTDPIADPKVTLGALAFANDLGRLLTRIKAGPQATPAMIRRATLLLAQMIRTSGRFKRARFTG YTRDERRDQRSGHAVERANVDIVERFALRLLDEWVNDQCVECEGRGVVRRARAVTTATHACDSCGGSGKVCVSEERIPFF EGRSGPVVFREYEPCDDCGGMGRIAASPVADAKGRHICPECSGSGKRQIDDAGRAHALGISLIDYRRNWSWRFHDMLALL DSVDGSVSDTMRRQLRG >Mature_257_residues MIDLKERAGVAMSVRGQFTDPIADPKVTLGALAFANDLGRLLTRIKAGPQATPAMIRRATLLLAQMIRTSGRFKRARFTG YTRDERRDQRSGHAVERANVDIVERFALRLLDEWVNDQCVECEGRGVVRRARAVTTATHACDSCGGSGKVCVSEERIPFF EGRSGPVVFREYEPCDDCGGMGRIAASPVADAKGRHICPECSGSGKRQIDDAGRAHALGISLIDYRRNWSWRFHDMLALL DSVDGSVSDTMRRQLRG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28383; Mature: 28383
Theoretical pI: Translated: 9.02; Mature: 9.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 3.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDLKERAGVAMSVRGQFTDPIADPKVTLGALAFANDLGRLLTRIKAGPQATPAMIRRAT CCCCHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH LLLAQMIRTSGRFKRARFTGYTRDERRDQRSGHAVERANVDIVERFALRLLDEWVNDQCV HHHHHHHHHCCCHHHHHCCCCCCHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHCCCEE ECEGRGVVRRARAVTTATHACDSCGGSGKVCVSEERIPFFEGRSGPVVFREYEPCDDCGG EECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEECCCCCEEEECCCCCHHCCC MGRIAASPVADAKGRHICPECSGSGKRQIDDAGRAHALGISLIDYRRNWSWRFHDMLALL CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHEECCCCCCHHHHHHHHHH DSVDGSVSDTMRRQLRG HHCCCHHHHHHHHHHCC >Mature Secondary Structure MIDLKERAGVAMSVRGQFTDPIADPKVTLGALAFANDLGRLLTRIKAGPQATPAMIRRAT CCCCHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH LLLAQMIRTSGRFKRARFTGYTRDERRDQRSGHAVERANVDIVERFALRLLDEWVNDQCV HHHHHHHHHCCCHHHHHCCCCCCHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHCCCEE ECEGRGVVRRARAVTTATHACDSCGGSGKVCVSEERIPFFEGRSGPVVFREYEPCDDCGG EECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEECCCCCEEEECCCCCHHCCC MGRIAASPVADAKGRHICPECSGSGKRQIDDAGRAHALGISLIDYRRNWSWRFHDMLALL CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHEECCCCCCHHHHHHHHHH DSVDGSVSDTMRRQLRG HHCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA