Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
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Accession | NC_012724 |
Length | 3,906,507 |
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The map label for this gene is 238027572
Identifier: 238027572
GI number: 238027572
Start: 2175735
End: 2176166
Strand: Reverse
Name: 238027572
Synonym: bglu_1g19900
Alternate gene names: NA
Gene position: 2176166-2175735 (Counterclockwise)
Preceding gene: 238027573
Following gene: 238027567
Centisome position: 55.71
GC content: 66.2
Gene sequence:
>432_bases ATGACACCATATCGAGACATCACCGATGGCGAATGGCAGCGCATTGCCGGCCTGCTGCCGGAATTGCGGCCGCGCAAGGA ACGGCGCGGGCGGCCGCTGGCCGATGCCCGCAGCGTGCTGAACGGCGTGCTGTGGGTCATTTTCAGCGGCGCCTCATGGT CGGCCATTCCCCGCCGCTATCCCGCGTATCAAACCTGCCACCGCCGCTTCATGATCTGGTACGAGTCGGGCACGCTGCGC GCGGTGCTCGACGAGTTGTTCGGTCCGGCCGGCGACGATCTCTACGAAACCGTAACGGTCCGTATGCGCAAGCATGTGCA TTCCCATGCGGCGGAGCTGCGACATGCCGTGCAGCCGAATCGGATCCGTCTGCCACGCATCGATCCCGCCTTCACGCCGG AGCCGCACCTGCCGCCGCGTTCCGCGGCATGA
Upstream 100 bases:
>100_bases TGAGCGACACCGCTTTACTCAAGCATTCTCGGAATTGTTCAATATCCAGCGCGAAAGCTGCCCGATATCGTGTGTCATGT TTTTGTAAATGGAGAATGGC
Downstream 100 bases:
>100_bases GCCGGACGCGGGGGCCGCCGGCTCGCGAGCGGCCGCCCGTCCAGGCGCACTGTGCGGCGTCCGGCGCGGCGCGCCGTGTC CGGCCGCCCCGGCTTGATAC
Product: putative transposase
Products: NA
Alternate protein names: Transposase; IS5 Family Transposase OrfA
Number of amino acids: Translated: 143; Mature: 142
Protein sequence:
>143_residues MTPYRDITDGEWQRIAGLLPELRPRKERRGRPLADARSVLNGVLWVIFSGASWSAIPRRYPAYQTCHRRFMIWYESGTLR AVLDELFGPAGDDLYETVTVRMRKHVHSHAAELRHAVQPNRIRLPRIDPAFTPEPHLPPRSAA
Sequences:
>Translated_143_residues MTPYRDITDGEWQRIAGLLPELRPRKERRGRPLADARSVLNGVLWVIFSGASWSAIPRRYPAYQTCHRRFMIWYESGTLR AVLDELFGPAGDDLYETVTVRMRKHVHSHAAELRHAVQPNRIRLPRIDPAFTPEPHLPPRSAA >Mature_142_residues TPYRDITDGEWQRIAGLLPELRPRKERRGRPLADARSVLNGVLWVIFSGASWSAIPRRYPAYQTCHRRFMIWYESGTLRA VLDELFGPAGDDLYETVTVRMRKHVHSHAAELRHAVQPNRIRLPRIDPAFTPEPHLPPRSAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16503; Mature: 16372
Theoretical pI: Translated: 10.65; Mature: 10.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPYRDITDGEWQRIAGLLPELRPRKERRGRPLADARSVLNGVLWVIFSGASWSAIPRRY CCCCCCCCCCHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC PAYQTCHRRFMIWYESGTLRAVLDELFGPAGDDLYETVTVRMRKHVHSHAAELRHAVQPN CHHHHHHHHEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC RIRLPRIDPAFTPEPHLPPRSAA CEECCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TPYRDITDGEWQRIAGLLPELRPRKERRGRPLADARSVLNGVLWVIFSGASWSAIPRRY CCCCCCCCCHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC PAYQTCHRRFMIWYESGTLRAVLDELFGPAGDDLYETVTVRMRKHVHSHAAELRHAVQPN CHHHHHHHHEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC RIRLPRIDPAFTPEPHLPPRSAA CEECCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA