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The map label for this gene is ycfH [C]

Identifier: 238027003

GI number: 238027003

Start: 1522884

End: 1523663

Strand: Direct

Name: ycfH [C]

Synonym: bglu_1g13810

Alternate gene names: 238027003

Gene position: 1522884-1523663 (Clockwise)

Preceding gene: 238027002

Following gene: 238027004

Centisome position: 38.98

GC content: 67.69

Gene sequence:

>780_bases
ATGTTCGTCGATTCCCATTGCCACATCAATTTCGAAGGCCTCGCCGAGCGCCTGCCCGAGGTGCTCGCCAACATGCGCGA
GCATCGGGTCACGCATGCGCTCTGCGTGTCGGTCGACCTGGAGACGCTGCCGTCGGTGCTCGAGATCGCCGAGCGGCACC
ACAACGTGTTCGCTTCGGTGGGCGTGCATCCGGACCACGAGGACGTGAAGGAGCCGACGCTCGCCGAGCTCGTCGAGCTG
GCCGCGCACCCGAAGGTGGTGGCGATCGGCGAGACCGGGCTCGACTACTACCGGCTCGGCGAACGCACGCTGGCCGACAT
GGAATGGCAGCGCGAGCGGTTTCGCACCCACATCCGCGCCGCGCGCGAGACCATGAAGCCGCTCATCATCCACACGCGCG
CCTCGGCCGACGACACGCTGCGCCTGATGGCCGAGGAGGGCGCCTCGCTGCCCGGCGGCGTGATGCACTGCTTCACCGAG
CCGTGGCCGGTGGCCGAGGCGGCGCTCGCGCAGAACTTCCACATCTCGCTGTCGGGCATCGTCACGTTCAAGAAGGCCGA
GGACGTGCAGGAGGTGGCGCGACGCGTGCCGCTCGAGCGGCTGCTGATCGAGACCGACTCGCCGTACCTCGCGCCCGTGC
CGTATCGCGGCAAGCCGAATGAACCTGCTTACGTCAGTTATGTCGGACGCTTTATCGCGGCGCAGCGCGGCATCAGCGAC
GAAGCGCTGGCCGCCGCGACTTCGCAGAACTTTTTCCGGCTGTTCGGCATCGCCGCCTGA

Upstream 100 bases:

>100_bases
CAACGCGCGGCTCGTGTTCGAGGAACTGTTCCTCGGCTACCGCGCGCTCTACGCCTGAGCCCGGCCGCCGGCCGGCCCCG
AACCCAGACAGGAAGCGCAG

Downstream 100 bases:

>100_bases
GGCGCTGCCGGCCGGGAGCAACCCAGGGAAGGAGCCCAAACCAATGAAAACGATCCACGGTGCATCCACGATTCGCCCCG
GCGCCGCGCTGCGCGCGCTC

Product: hydrolase, TatD family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MFVDSHCHINFEGLAERLPEVLANMREHRVTHALCVSVDLETLPSVLEIAERHHNVFASVGVHPDHEDVKEPTLAELVEL
AAHPKVVAIGETGLDYYRLGERTLADMEWQRERFRTHIRAARETMKPLIIHTRASADDTLRLMAEEGASLPGGVMHCFTE
PWPVAEAALAQNFHISLSGIVTFKKAEDVQEVARRVPLERLLIETDSPYLAPVPYRGKPNEPAYVSYVGRFIAAQRGISD
EALAAATSQNFFRLFGIAA

Sequences:

>Translated_259_residues
MFVDSHCHINFEGLAERLPEVLANMREHRVTHALCVSVDLETLPSVLEIAERHHNVFASVGVHPDHEDVKEPTLAELVEL
AAHPKVVAIGETGLDYYRLGERTLADMEWQRERFRTHIRAARETMKPLIIHTRASADDTLRLMAEEGASLPGGVMHCFTE
PWPVAEAALAQNFHISLSGIVTFKKAEDVQEVARRVPLERLLIETDSPYLAPVPYRGKPNEPAYVSYVGRFIAAQRGISD
EALAAATSQNFFRLFGIAA
>Mature_259_residues
MFVDSHCHINFEGLAERLPEVLANMREHRVTHALCVSVDLETLPSVLEIAERHHNVFASVGVHPDHEDVKEPTLAELVEL
AAHPKVVAIGETGLDYYRLGERTLADMEWQRERFRTHIRAARETMKPLIIHTRASADDTLRLMAEEGASLPGGVMHCFTE
PWPVAEAALAQNFHISLSGIVTFKKAEDVQEVARRVPLERLLIETDSPYLAPVPYRGKPNEPAYVSYVGRFIAAQRGISD
EALAAATSQNFFRLFGIAA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI225903424, Length=273, Percent_Identity=27.8388278388278, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI110349730, Length=264, Percent_Identity=28.4090909090909, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI110349734, Length=264, Percent_Identity=28.4090909090909, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI226061853, Length=272, Percent_Identity=29.0441176470588, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI14042943, Length=203, Percent_Identity=29.064039408867, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI226061614, Length=259, Percent_Identity=26.2548262548263, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI225903439, Length=180, Percent_Identity=30.5555555555556, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI226061595, Length=229, Percent_Identity=27.9475982532751, Blast_Score=71, Evalue=9e-13,
Organism=Escherichia coli, GI1787342, Length=267, Percent_Identity=46.0674157303371, Blast_Score=205, Evalue=2e-54,
Organism=Escherichia coli, GI48994985, Length=264, Percent_Identity=32.5757575757576, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI87082439, Length=263, Percent_Identity=27.7566539923954, Blast_Score=102, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17559024, Length=284, Percent_Identity=25.7042253521127, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI17565396, Length=309, Percent_Identity=29.4498381877023, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI71980746, Length=263, Percent_Identity=24.7148288973384, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17543026, Length=304, Percent_Identity=26.3157894736842, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24648690, Length=236, Percent_Identity=28.8135593220339, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24586117, Length=252, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI221330018, Length=252, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 28909; Mature: 28909

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVDSHCHINFEGLAERLPEVLANMREHRVTHALCVSVDLETLPSVLEIAERHHNVFASV
CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHEEEEC
GVHPDHEDVKEPTLAELVELAAHPKVVAIGETGLDYYRLGERTLADMEWQRERFRTHIRA
CCCCCHHHHCCCHHHHHHHHHCCCCEEEECCCCCHHHHHCCHHHHHHHHHHHHHHHHHHH
ARETMKPLIIHTRASADDTLRLMAEEGASLPGGVMHCFTEPWPVAEAALAQNFHISLSGI
HHHHHCCEEEEECCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHCCCEEEEEEE
VTFKKAEDVQEVARRVPLERLLIETDSPYLAPVPYRGKPNEPAYVSYVGRFIAAQRGISD
EEEHHHHHHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCH
EALAAATSQNFFRLFGIAA
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFVDSHCHINFEGLAERLPEVLANMREHRVTHALCVSVDLETLPSVLEIAERHHNVFASV
CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHEEEEC
GVHPDHEDVKEPTLAELVELAAHPKVVAIGETGLDYYRLGERTLADMEWQRERFRTHIRA
CCCCCHHHHCCCHHHHHHHHHCCCCEEEECCCCCHHHHHCCHHHHHHHHHHHHHHHHHHH
ARETMKPLIIHTRASADDTLRLMAEEGASLPGGVMHCFTEPWPVAEAALAQNFHISLSGI
HHHHHCCEEEEECCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHCCCEEEEEEE
VTFKKAEDVQEVARRVPLERLLIETDSPYLAPVPYRGKPNEPAYVSYVGRFIAAQRGISD
EEEHHHHHHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCH
EALAAATSQNFFRLFGIAA
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]