| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yahD [C]
Identifier: 238027004
GI number: 238027004
Start: 1523707
End: 1524438
Strand: Direct
Name: yahD [C]
Synonym: bglu_1g13820
Alternate gene names: 238027004
Gene position: 1523707-1524438 (Clockwise)
Preceding gene: 238027003
Following gene: 238027005
Centisome position: 39.0
GC content: 67.9
Gene sequence:
>732_bases ATGAAAACGATCCACGGTGCATCCACGATTCGCCCCGGCGCCGCGCTGCGCGCGCTCGTCATGGCCGCCGGCGTGGCCGC GGGCCTCGCCGCGCCGCTCGCGCAGGCCGAATCGCGCGACGCGATCGTCAAGGCCGTCAAGTTCGACGACATCGACGACA TCGCGAAGCAGCTCAAGCACGGCCTCGACCCGAACCTGACCGACGAGCAGGGCAATCCGCTGCTCGTGATCGCCGCGCGC GAGAAGTCCGACAAGGTGGCCGAGGCGCTCGCCGCCGCGCCCAACATCGACCTGGAAAAGACCGATCCGGCCGGCGAGAA CGGCCTGATGATGGCCGCGCTCAACGGCGACTTGCCGCTCGTCAAGTACCTGGTGGACAAGGGCGCCGAGGTCAGCAAGA AGGGCTGGACGGCGCTGCACTACGCGGCCACCAACGGCCACGACGACGTGGTCAGCTACCTGCTCGACAAGTCCGCCTAT ATCGACGCCGGCTCGCCGAACGGCACCACGCCGCTGATGATGGCCGCGCGCGGCAACCACGCCAGCACCGTCACGCTGCT GCTCGACCAAGGGGCCGATCCGGCCATCAAGAACCAGGTCGGCGTGACCGCGCTCGAGTTCGCGAAACACTACGAGGCGC CCGATGCGGTCGCGATTTTGTCGAAGCGCACGGTGCGGATCGGCGACGCGCGGCCCGCGAATGCGGGCGATGGTGAAAAC AGTGCAAAATAG
Upstream 100 bases:
>100_bases GCGCTGGCCGCCGCGACTTCGCAGAACTTTTTCCGGCTGTTCGGCATCGCCGCCTGAGGCGCTGCCGGCCGGGAGCAACC CAGGGAAGGAGCCCAAACCA
Downstream 100 bases:
>100_bases CGGTTTTGGGCGCGGCGTTTGCCGCGCCGTTTTTGTCGTGCCGGCGTGACGCCGCCGACCTGACATAAAGGAACATCCAA TGTTGCGGGCTCTGTTTTTT
Product: Ankyrin repeat-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 243; Mature: 243
Protein sequence:
>243_residues MKTIHGASTIRPGAALRALVMAAGVAAGLAAPLAQAESRDAIVKAVKFDDIDDIAKQLKHGLDPNLTDEQGNPLLVIAAR EKSDKVAEALAAAPNIDLEKTDPAGENGLMMAALNGDLPLVKYLVDKGAEVSKKGWTALHYAATNGHDDVVSYLLDKSAY IDAGSPNGTTPLMMAARGNHASTVTLLLDQGADPAIKNQVGVTALEFAKHYEAPDAVAILSKRTVRIGDARPANAGDGEN SAK
Sequences:
>Translated_243_residues MKTIHGASTIRPGAALRALVMAAGVAAGLAAPLAQAESRDAIVKAVKFDDIDDIAKQLKHGLDPNLTDEQGNPLLVIAAR EKSDKVAEALAAAPNIDLEKTDPAGENGLMMAALNGDLPLVKYLVDKGAEVSKKGWTALHYAATNGHDDVVSYLLDKSAY IDAGSPNGTTPLMMAARGNHASTVTLLLDQGADPAIKNQVGVTALEFAKHYEAPDAVAILSKRTVRIGDARPANAGDGEN SAK >Mature_243_residues MKTIHGASTIRPGAALRALVMAAGVAAGLAAPLAQAESRDAIVKAVKFDDIDDIAKQLKHGLDPNLTDEQGNPLLVIAAR EKSDKVAEALAAAPNIDLEKTDPAGENGLMMAALNGDLPLVKYLVDKGAEVSKKGWTALHYAATNGHDDVVSYLLDKSAY IDAGSPNGTTPLMMAARGNHASTVTLLLDQGADPAIKNQVGVTALEFAKHYEAPDAVAILSKRTVRIGDARPANAGDGEN SAK
Specific function: Unknown
COG id: COG0666
COG function: function code R; FOG: Ankyrin repeat
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 18 ANK repeats [H]
Homologues:
Organism=Homo sapiens, GI148596917, Length=225, Percent_Identity=29.3333333333333, Blast_Score=88, Evalue=8e-18, Organism=Homo sapiens, GI188595682, Length=140, Percent_Identity=41.4285714285714, Blast_Score=84, Evalue=9e-17, Organism=Homo sapiens, GI52426737, Length=140, Percent_Identity=41.4285714285714, Blast_Score=84, Evalue=9e-17, Organism=Homo sapiens, GI225543463, Length=181, Percent_Identity=34.2541436464088, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI62988328, Length=197, Percent_Identity=35.5329949238579, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI225543461, Length=181, Percent_Identity=34.2541436464088, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI52426735, Length=179, Percent_Identity=38.5474860335196, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI156142184, Length=130, Percent_Identity=37.6923076923077, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI32967601, Length=198, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI256574792, Length=155, Percent_Identity=32.258064516129, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI38569428, Length=106, Percent_Identity=40.5660377358491, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI38569426, Length=106, Percent_Identity=40.5660377358491, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI268607595, Length=168, Percent_Identity=31.547619047619, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI24233530, Length=166, Percent_Identity=36.7469879518072, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI12746412, Length=128, Percent_Identity=35.9375, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI70780357, Length=128, Percent_Identity=37.5, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI215598574, Length=128, Percent_Identity=37.5, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI70780355, Length=128, Percent_Identity=37.5, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI70780353, Length=128, Percent_Identity=37.5, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI70780359, Length=128, Percent_Identity=37.5, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI42734375, Length=122, Percent_Identity=35.2459016393443, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI87239981, Length=174, Percent_Identity=32.183908045977, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI68131557, Length=164, Percent_Identity=37.1951219512195, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI223634006, Length=101, Percent_Identity=42.5742574257426, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI37620163, Length=131, Percent_Identity=40.4580152671756, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI46519147, Length=131, Percent_Identity=40.4580152671756, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI4506499, Length=135, Percent_Identity=34.0740740740741, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI38683807, Length=88, Percent_Identity=48.8636363636364, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI38683816, Length=88, Percent_Identity=48.8636363636364, Blast_Score=71, Evalue=7e-13, Organism=Homo sapiens, GI157739945, Length=142, Percent_Identity=36.6197183098592, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI30425444, Length=172, Percent_Identity=30.2325581395349, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI55741641, Length=157, Percent_Identity=34.3949044585987, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI13376842, Length=187, Percent_Identity=31.5508021390374, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI19924156, Length=154, Percent_Identity=32.4675324675325, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI30089994, Length=166, Percent_Identity=32.5301204819277, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI157266328, Length=122, Percent_Identity=34.4262295081967, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI28605137, Length=112, Percent_Identity=36.6071428571429, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI4506217, Length=112, Percent_Identity=36.6071428571429, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI38176283, Length=166, Percent_Identity=32.5301204819277, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI46519154, Length=191, Percent_Identity=32.4607329842932, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI59850762, Length=192, Percent_Identity=27.6041666666667, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI46519151, Length=191, Percent_Identity=32.4607329842932, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI56550047, Length=192, Percent_Identity=27.6041666666667, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI21956645, Length=101, Percent_Identity=42.5742574257426, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI224465233, Length=178, Percent_Identity=33.7078651685393, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI224809478, Length=188, Percent_Identity=28.7234042553192, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI224809474, Length=188, Percent_Identity=28.7234042553192, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI224809472, Length=188, Percent_Identity=28.7234042553192, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI224809470, Length=188, Percent_Identity=28.7234042553192, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI224809468, Length=188, Percent_Identity=28.7234042553192, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI224809476, Length=188, Percent_Identity=28.7234042553192, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI126723390, Length=187, Percent_Identity=30.4812834224599, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI7657265, Length=145, Percent_Identity=35.1724137931034, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI67906195, Length=95, Percent_Identity=42.1052631578947, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI56676397, Length=114, Percent_Identity=38.5964912280702, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI70995267, Length=148, Percent_Identity=33.1081081081081, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI38327522, Length=153, Percent_Identity=31.3725490196078, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI157504499, Length=166, Percent_Identity=33.7349397590361, Blast_Score=64, Evalue=9e-11, Organism=Homo sapiens, GI304361760, Length=117, Percent_Identity=39.3162393162393, Blast_Score=64, Evalue=1e-10, Organism=Homo sapiens, GI304361757, Length=117, Percent_Identity=39.3162393162393, Blast_Score=64, Evalue=1e-10, Organism=Escherichia coli, GI1786511, Length=170, Percent_Identity=30.5882352941176, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71981414, Length=151, Percent_Identity=35.7615894039735, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI25145251, Length=151, Percent_Identity=35.7615894039735, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17542700, Length=151, Percent_Identity=35.7615894039735, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71981389, Length=151, Percent_Identity=35.7615894039735, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI212646035, Length=161, Percent_Identity=33.5403726708075, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI212646033, Length=161, Percent_Identity=33.5403726708075, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI212646031, Length=161, Percent_Identity=33.5403726708075, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI71981411, Length=187, Percent_Identity=33.1550802139037, Blast_Score=73, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6322079, Length=111, Percent_Identity=36.036036036036, Blast_Score=62, Evalue=9e-11, Organism=Drosophila melanogaster, GI161082089, Length=160, Percent_Identity=37.5, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI161082092, Length=160, Percent_Identity=37.5, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI161082085, Length=160, Percent_Identity=37.5, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI161082099, Length=160, Percent_Identity=37.5, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI161082106, Length=160, Percent_Identity=37.5, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI161082081, Length=160, Percent_Identity=37.5, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI161082096, Length=160, Percent_Identity=37.5, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI161082110, Length=160, Percent_Identity=37.5, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI281359521, Length=145, Percent_Identity=34.4827586206897, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI281359519, Length=145, Percent_Identity=34.4827586206897, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI28558752, Length=145, Percent_Identity=34.4827586206897, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI28558750, Length=145, Percent_Identity=34.4827586206897, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI28558756, Length=145, Percent_Identity=34.4827586206897, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI28558754, Length=145, Percent_Identity=34.4827586206897, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI45552223, Length=149, Percent_Identity=33.5570469798658, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI221472807, Length=149, Percent_Identity=33.5570469798658, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI17998549, Length=149, Percent_Identity=33.5570469798658, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI221330480, Length=138, Percent_Identity=36.231884057971, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI45551135, Length=138, Percent_Identity=36.231884057971, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI221330478, Length=138, Percent_Identity=36.231884057971, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI221330476, Length=138, Percent_Identity=36.231884057971, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI45550479, Length=138, Percent_Identity=36.231884057971, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI221330482, Length=138, Percent_Identity=36.231884057971, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI221330474, Length=138, Percent_Identity=36.231884057971, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI281363919, Length=138, Percent_Identity=36.231884057971, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI28573593, Length=138, Percent_Identity=36.231884057971, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI24650843, Length=161, Percent_Identity=31.055900621118, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI28571867, Length=89, Percent_Identity=43.8202247191011, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI28571865, Length=89, Percent_Identity=43.8202247191011, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI24660357, Length=114, Percent_Identity=36.8421052631579, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002110 - InterPro: IPR020683 - InterPro: IPR007685 [H]
Pfam domain/function: PF00023 Ank; PF04607 RelA_SpoT [H]
EC number: NA
Molecular weight: Translated: 25206; Mature: 25206
Theoretical pI: Translated: 5.62; Mature: 5.62
Prosite motif: PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTIHGASTIRPGAALRALVMAAGVAAGLAAPLAQAESRDAIVKAVKFDDIDDIAKQLKH CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHH GLDPNLTDEQGNPLLVIAAREKSDKVAEALAAAPNIDLEKTDPAGENGLMMAALNGDLPL CCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHH VKYLVDKGAEVSKKGWTALHYAATNGHDDVVSYLLDKSAYIDAGSPNGTTPLMMAARGNH HHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCCEEEEEECCCC ASTVTLLLDQGADPAIKNQVGVTALEFAKHYEAPDAVAILSKRTVRIGDARPANAGDGEN CEEEEEEEECCCCCHHHHHCCHHHHHHHHHCCCCCHHHHHHCCEEEECCCCCCCCCCCCC SAK CCC >Mature Secondary Structure MKTIHGASTIRPGAALRALVMAAGVAAGLAAPLAQAESRDAIVKAVKFDDIDDIAKQLKH CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHH GLDPNLTDEQGNPLLVIAAREKSDKVAEALAAAPNIDLEKTDPAGENGLMMAALNGDLPL CCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHH VKYLVDKGAEVSKKGWTALHYAATNGHDDVVSYLLDKSAYIDAGSPNGTTPLMMAARGNH HHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCEEECCCCCCCCEEEEEECCCC ASTVTLLLDQGADPAIKNQVGVTALEFAKHYEAPDAVAILSKRTVRIGDARPANAGDGEN CEEEEEEEECCCCCHHHHHCCHHHHHHHHHCCCCCHHHHHHCCEEEECCCCCCCCCCCCC SAK CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA