| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is mrcA [H]
Identifier: 238026953
GI number: 238026953
Start: 1452177
End: 1454690
Strand: Direct
Name: mrcA [H]
Synonym: bglu_1g13280
Alternate gene names: 238026953
Gene position: 1452177-1454690 (Clockwise)
Preceding gene: 238026946
Following gene: 238026957
Centisome position: 37.17
GC content: 68.3
Gene sequence:
>2514_bases ATGCCGATCATCAAACGCCCGTCCGATTCCGAACCCAACTACAAGTTACGCCGCTCGCCTTCCGGTGCGTTTTACGCGGA CGAATCCGATCGCCACGGCGGCGGTGACGACCATCGCCGCGACCGCGACGATGACGACGGCGGCGGACGCTCGGTCGGCG CGCGCATCGCGTTGTGGTTCGCCGGCCTGATCGCGCTGGCCGGCGTGGTCGGCGCGCTGATCGTCGGCTATGCGCTGGTG GTGATGGCGCCGCAGCTGCCGTCGCTCGATGCGCTGACCAACTACCAGCCGAAGGTGCCGCTGCGCGTCTATACGGCCGA CCACGTGCTGATCGGCGAGTTCGGCGAGGAGCGCCGCAGCCTGGTGCGCTTCCAGGACATCCCCGACGTGATGAAGAAGG CGGTGCTCGCGATCGAGGACTACCGCTTCTACGAGCACGGCGGTGTCGACTTCGTCGGCATCCTGCGTGCGGGCGTGGCC GACCTGATGCACGGCGGCGCGCGGCAGGGCGCGAGCACGATCACGATGCAGGTCGCGCGCAACTTCTTCCTGTCGAGCGA GAAGACCTATACGCGCAAGATCTACGAAATGCTGCTTGCCTACAAGATCGAGCGCGCGCTGACGAAGGACCAGATCCTCG AGCTGTACATGAACCAGATCTATCTGGGGCAGCGCGCCTACGGCTTCGCGGCCGCCGCGCGCGTCTATTTCGGCAAGGAC CTGAAGGACATCACGCTGGCCGAGGCGGCCATGCTGGCCGGCCTGCCGAAGGCGCCGTCGGCCTACAACCCGGTGGTCAA TCCGAAGCGCGCGAAGGTGCGCCAGGAATACATCCTGAGGCGCATGCTCGAGCTCGGCTACATCACGCAGCCGCAGTACG ACGCCGCCGTGAAGGAGGAAATCCACACGCGCACGCCGGGCAACCAGTACGCCGTGCATGCCGAGTACGTCGCCGAGATG GTGCGCCAGATGATGTACGCGCAGTACAAGGACGAAACCTATACGCGCGGGCTGAGCGTGACCACCACGATCAACTCGAC GGACCAGGAAGCGGCCTACCAGGCCGTGCGGCGCGGCATTCTCGACTACGAGCGCCGCCACGGGTATCGCGGGCCGGAAG GCTTCATCGCGCTGCCGGCCGCCGGCGACGCGCGCGACGAGGCTATCGACGACGCGCTGGCCGACCACCCCGACAACGGC GACCTGCAGTCGGCCGTGGTGATCGCCGCGGCGCCGTCGGCGGTGGAGGTGCAGTTCGTGGGCGGCGCGACCGCGAAGAT CAGCGGGGCCAACCTGCGCTTCGTGGCGGCCGCGCTGAGCCCGCGCGCGTCCGACGCGCTGCGCATCAAGCCCGGCTCGA TCGTGCGCGTGGTCAAGGACGCGCGCGACAACTGGCAGGTCAGCCAGCTGCCGCAGGTGGAAGGCGCGCTGGTCGCGCTC ACGCCGCAGGACGGCGCGATCCGCTCGCTGGTCGGCGGCTTCGACTTCAACAAGAGCAAATTCAACCACGTCACGCAGGC GTGGCGCCAGCCCGGTTCGAGCTTCAAGCCCTTCATCTATTCGGCCGCGCTCGAGAAGGGCCTCGGGCCGGCGACCATCA TCAACGACGCGCCGCTGTACTTCCCGCCCAGCACGCCGGGCGGCACCGCCTGGGAGCCGAAGGACGACGACCAGCCGGAC GGCCCGATGACGATGCGCGATGCGCTGCGCAAGTCGAAGAACCTCGTGTCGATCCGGATCCTCGCCTCGATCGGTACCAA GTACGCCCAGGACTACGTGACCCAGCGGTTCGGCTTCGATCCGGCCAAGACGCCGCCCTACCTGCCGATGGCGCTCGGCG CCGGGCTCGTCACGCCGCTGCAGCTGGCGGGCGCGTATGCGGTGTTCGCCAACGGCGGCTACCGCGTCGATCCGTATCTG ATCGCGGAAGTCGACGACGCTTACGGCCAGCCGCTGCAAAAGGCGCAGCCGGCGATCGCCGGCAGCAACGCGCAGCGCAC CATCGAGGCGCGCAACGCCTACGTGATGAACAGCATGCTGCACACGGTGGCGACCTCCGGCACCGGCGCCGGCTCCAACG TGCTGGGGCGCTCCGACCTGCAGGGCAAGACCGGTACCACCAACGACGCGAAGGACGGCTGGTTCGCCGGCTATCAGCAG TCGCTGGTGGCGGTGGCCTGGATGGGCTTCGACCAGCCGAGGAGCCTCGGCAGCCGCGAGTTCGGCGCCCAGCTCGGCCT GCCGATCTGGATCAACTACATGCGCACGGCGCTGCACGGCGTGCCCGAGCAGCAGATGCCGATGCCCGACGGCCTGACCA CCATCGACGGCGAGCTGTACTTCTCCGATCACACGCCGGGCAACGGCTTCGTCGCGAACGTGGACATCGGCGACGCGGCG AACCCGATCAACGCCAACGACGCGCTCGGCTCGGCCGGCGCGGCGGGCCTGACGCCGCCGCCCGTGACGCCGCAGGAAAA GCAGCAGATCATGGACATGTTCGACAAGCCCTGA
Upstream 100 bases:
>100_bases TACGCTCCTGCGCATCGCCTCAAGCCCCAACACCTAAGATCCACACGCACATGCGCGCTCCGCGCGCCCGCGGTGTCGCC GCAGCGCCCGCCATTCCGAC
Downstream 100 bases:
>100_bases TCCCGGCGAGCCCCGGCCCGTGACGGCGGGGCCGCGCGATGCGCGACGACGGCGCGGCGGACTTCGCCGCGCCGTTTTGC GTTGCGGCGCCGGCCGGTGC
Product: membrane carboxypeptidase/penicillin-binding protein
Products: NA
Alternate protein names: PBP-1a; PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 837; Mature: 836
Protein sequence:
>837_residues MPIIKRPSDSEPNYKLRRSPSGAFYADESDRHGGGDDHRRDRDDDDGGGRSVGARIALWFAGLIALAGVVGALIVGYALV VMAPQLPSLDALTNYQPKVPLRVYTADHVLIGEFGEERRSLVRFQDIPDVMKKAVLAIEDYRFYEHGGVDFVGILRAGVA DLMHGGARQGASTITMQVARNFFLSSEKTYTRKIYEMLLAYKIERALTKDQILELYMNQIYLGQRAYGFAAAARVYFGKD LKDITLAEAAMLAGLPKAPSAYNPVVNPKRAKVRQEYILRRMLELGYITQPQYDAAVKEEIHTRTPGNQYAVHAEYVAEM VRQMMYAQYKDETYTRGLSVTTTINSTDQEAAYQAVRRGILDYERRHGYRGPEGFIALPAAGDARDEAIDDALADHPDNG DLQSAVVIAAAPSAVEVQFVGGATAKISGANLRFVAAALSPRASDALRIKPGSIVRVVKDARDNWQVSQLPQVEGALVAL TPQDGAIRSLVGGFDFNKSKFNHVTQAWRQPGSSFKPFIYSAALEKGLGPATIINDAPLYFPPSTPGGTAWEPKDDDQPD GPMTMRDALRKSKNLVSIRILASIGTKYAQDYVTQRFGFDPAKTPPYLPMALGAGLVTPLQLAGAYAVFANGGYRVDPYL IAEVDDAYGQPLQKAQPAIAGSNAQRTIEARNAYVMNSMLHTVATSGTGAGSNVLGRSDLQGKTGTTNDAKDGWFAGYQQ SLVAVAWMGFDQPRSLGSREFGAQLGLPIWINYMRTALHGVPEQQMPMPDGLTTIDGELYFSDHTPGNGFVANVDIGDAA NPINANDALGSAGAAGLTPPPVTPQEKQQIMDMFDKP
Sequences:
>Translated_837_residues MPIIKRPSDSEPNYKLRRSPSGAFYADESDRHGGGDDHRRDRDDDDGGGRSVGARIALWFAGLIALAGVVGALIVGYALV VMAPQLPSLDALTNYQPKVPLRVYTADHVLIGEFGEERRSLVRFQDIPDVMKKAVLAIEDYRFYEHGGVDFVGILRAGVA DLMHGGARQGASTITMQVARNFFLSSEKTYTRKIYEMLLAYKIERALTKDQILELYMNQIYLGQRAYGFAAAARVYFGKD LKDITLAEAAMLAGLPKAPSAYNPVVNPKRAKVRQEYILRRMLELGYITQPQYDAAVKEEIHTRTPGNQYAVHAEYVAEM VRQMMYAQYKDETYTRGLSVTTTINSTDQEAAYQAVRRGILDYERRHGYRGPEGFIALPAAGDARDEAIDDALADHPDNG DLQSAVVIAAAPSAVEVQFVGGATAKISGANLRFVAAALSPRASDALRIKPGSIVRVVKDARDNWQVSQLPQVEGALVAL TPQDGAIRSLVGGFDFNKSKFNHVTQAWRQPGSSFKPFIYSAALEKGLGPATIINDAPLYFPPSTPGGTAWEPKDDDQPD GPMTMRDALRKSKNLVSIRILASIGTKYAQDYVTQRFGFDPAKTPPYLPMALGAGLVTPLQLAGAYAVFANGGYRVDPYL IAEVDDAYGQPLQKAQPAIAGSNAQRTIEARNAYVMNSMLHTVATSGTGAGSNVLGRSDLQGKTGTTNDAKDGWFAGYQQ SLVAVAWMGFDQPRSLGSREFGAQLGLPIWINYMRTALHGVPEQQMPMPDGLTTIDGELYFSDHTPGNGFVANVDIGDAA NPINANDALGSAGAAGLTPPPVTPQEKQQIMDMFDKP >Mature_836_residues PIIKRPSDSEPNYKLRRSPSGAFYADESDRHGGGDDHRRDRDDDDGGGRSVGARIALWFAGLIALAGVVGALIVGYALVV MAPQLPSLDALTNYQPKVPLRVYTADHVLIGEFGEERRSLVRFQDIPDVMKKAVLAIEDYRFYEHGGVDFVGILRAGVAD LMHGGARQGASTITMQVARNFFLSSEKTYTRKIYEMLLAYKIERALTKDQILELYMNQIYLGQRAYGFAAAARVYFGKDL KDITLAEAAMLAGLPKAPSAYNPVVNPKRAKVRQEYILRRMLELGYITQPQYDAAVKEEIHTRTPGNQYAVHAEYVAEMV RQMMYAQYKDETYTRGLSVTTTINSTDQEAAYQAVRRGILDYERRHGYRGPEGFIALPAAGDARDEAIDDALADHPDNGD LQSAVVIAAAPSAVEVQFVGGATAKISGANLRFVAAALSPRASDALRIKPGSIVRVVKDARDNWQVSQLPQVEGALVALT PQDGAIRSLVGGFDFNKSKFNHVTQAWRQPGSSFKPFIYSAALEKGLGPATIINDAPLYFPPSTPGGTAWEPKDDDQPDG PMTMRDALRKSKNLVSIRILASIGTKYAQDYVTQRFGFDPAKTPPYLPMALGAGLVTPLQLAGAYAVFANGGYRVDPYLI AEVDDAYGQPLQKAQPAIAGSNAQRTIEARNAYVMNSMLHTVATSGTGAGSNVLGRSDLQGKTGTTNDAKDGWFAGYQQS LVAVAWMGFDQPRSLGSREFGAQLGLPIWINYMRTALHGVPEQQMPMPDGLTTIDGELYFSDHTPGNGFVANVDIGDAAN PINANDALGSAGAAGLTPPPVTPQEKQQIMDMFDKP
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG5009
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=780, Percent_Identity=40.3846153846154, Blast_Score=526, Evalue=1e-150, Organism=Escherichia coli, GI1786343, Length=320, Percent_Identity=32.8125, Blast_Score=145, Evalue=8e-36, Organism=Escherichia coli, GI1788867, Length=232, Percent_Identity=31.8965517241379, Blast_Score=110, Evalue=5e-25, Organism=Escherichia coli, GI1789601, Length=176, Percent_Identity=35.2272727272727, Blast_Score=95, Evalue=2e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.- [C]
Molecular weight: Translated: 90906; Mature: 90775
Theoretical pI: Translated: 6.47; Mature: 6.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIIKRPSDSEPNYKLRRSPSGAFYADESDRHGGGDDHRRDRDDDDGGGRSVGARIALWF CCCCCCCCCCCCCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH AGLIALAGVVGALIVGYALVVMAPQLPSLDALTNYQPKVPLRVYTADHVLIGEFGEERRS HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCEEEEECCEEEECCCCHHHHH LVRFQDIPDVMKKAVLAIEDYRFYEHGGVDFVGILRAGVADLMHGGARQGASTITMQVAR HHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH NFFLSSEKTYTRKIYEMLLAYKIERALTKDQILELYMNQIYLGQRAYGFAAAARVYFGKD HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC LKDITLAEAAMLAGLPKAPSAYNPVVNPKRAKVRQEYILRRMLELGYITQPQYDAAVKEE CHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH IHTRTPGNQYAVHAEYVAEMVRQMMYAQYKDETYTRGLSVTTTINSTDQEAAYQAVRRGI HHCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCHHHCCEEEEEEECCCHHHHHHHHHHHHH LDYERRHGYRGPEGFIALPAAGDARDEAIDDALADHPDNGDLQSAVVIAAAPSAVEVQFV HHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEEEE GGATAKISGANLRFVAAALSPRASDALRIKPGSIVRVVKDARDNWQVSQLPQVEGALVAL CCCEEEECCCCEEEEEEECCCCCCCEEEECCCHHHHHHHHCCCCCCHHCCCCCCCEEEEE TPQDGAIRSLVGGFDFNKSKFNHVTQAWRQPGSSFKPFIYSAALEKGLGPATIINDAPLY CCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCEE FPPSTPGGTAWEPKDDDQPDGPMTMRDALRKSKNLVSIRILASIGTKYAQDYVTQRFGFD ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCCC PAKTPPYLPMALGAGLVTPLQLAGAYAVFANGGYRVDPYLIAEVDDAYGQPLQKAQPAIA CCCCCCCCHHHHCCCHHHHHHHHCEEEEEECCCEEECCEEEEECCHHHCCCHHHCCCCCC GSNAQRTIEARNAYVMNSMLHTVATSGTGAGSNVLGRSDLQGKTGTTNDAKDGWFAGYQQ CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH SLVAVAWMGFDQPRSLGSREFGAQLGLPIWINYMRTALHGVPEQQMPMPDGLTTIDGELY HHHHHHHCCCCCHHHCCCHHHHHHCCCHHHHHHHHHHHHCCCHHCCCCCCCCEEECCEEE FSDHTPGNGFVANVDIGDAANPINANDALGSAGAAGLTPPPVTPQEKQQIMDMFDKP ECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure PIIKRPSDSEPNYKLRRSPSGAFYADESDRHGGGDDHRRDRDDDDGGGRSVGARIALWF CCCCCCCCCCCCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH AGLIALAGVVGALIVGYALVVMAPQLPSLDALTNYQPKVPLRVYTADHVLIGEFGEERRS HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCEEEEECCEEEECCCCHHHHH LVRFQDIPDVMKKAVLAIEDYRFYEHGGVDFVGILRAGVADLMHGGARQGASTITMQVAR HHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH NFFLSSEKTYTRKIYEMLLAYKIERALTKDQILELYMNQIYLGQRAYGFAAAARVYFGKD HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC LKDITLAEAAMLAGLPKAPSAYNPVVNPKRAKVRQEYILRRMLELGYITQPQYDAAVKEE CHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH IHTRTPGNQYAVHAEYVAEMVRQMMYAQYKDETYTRGLSVTTTINSTDQEAAYQAVRRGI HHCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCHHHCCEEEEEEECCCHHHHHHHHHHHHH LDYERRHGYRGPEGFIALPAAGDARDEAIDDALADHPDNGDLQSAVVIAAAPSAVEVQFV HHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEEEE GGATAKISGANLRFVAAALSPRASDALRIKPGSIVRVVKDARDNWQVSQLPQVEGALVAL CCCEEEECCCCEEEEEEECCCCCCCEEEECCCHHHHHHHHCCCCCCHHCCCCCCCEEEEE TPQDGAIRSLVGGFDFNKSKFNHVTQAWRQPGSSFKPFIYSAALEKGLGPATIINDAPLY CCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCEE FPPSTPGGTAWEPKDDDQPDGPMTMRDALRKSKNLVSIRILASIGTKYAQDYVTQRFGFD ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCCC PAKTPPYLPMALGAGLVTPLQLAGAYAVFANGGYRVDPYLIAEVDDAYGQPLQKAQPAIA CCCCCCCCHHHHCCCHHHHHHHHCEEEEEECCCEEECCEEEEECCHHHCCCHHHCCCCCC GSNAQRTIEARNAYVMNSMLHTVATSGTGAGSNVLGRSDLQGKTGTTNDAKDGWFAGYQQ CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH SLVAVAWMGFDQPRSLGSREFGAQLGLPIWINYMRTALHGVPEQQMPMPDGLTTIDGELY HHHHHHHCCCCCHHHCCCHHHHHHCCCHHHHHHHHHHHHCCCHHCCCCCCCCEEECCEEE FSDHTPGNGFVANVDIGDAANPINANDALGSAGAAGLTPPPVTPQEKQQIMDMFDKP ECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA