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The map label for this gene is ydfH [H]

Identifier: 238026937

GI number: 238026937

Start: 1432530

End: 1433234

Strand: Direct

Name: ydfH [H]

Synonym: bglu_1g13090

Alternate gene names: 238026937

Gene position: 1432530-1433234 (Clockwise)

Preceding gene: 238026936

Following gene: 238026938

Centisome position: 36.67

GC content: 71.06

Gene sequence:

>705_bases
ATGACGAACATGATGAAGAAGGCAACCGCCGCACCCGTGAGTGCGGCGGAGGCGATCGCCGAGCGCATCCGCGCGGCGAT
TCTCGAGCACCGGCTCGCGCCGGGCGCGAAGCTGACCGAAGCGCAGCTCTGTGACGTGTTCGGCGTGAAGCGCGGCACGA
TCCGGCAGGCGCTCGCGCTGCTCGCGACCGACCGGCTCGTCGATCTGGAGCCGAACCGCGGCGCGTTCGTGGCGAGCCCG
ACGCTGCAGGACGTCCACGAGGTGTTCGAGATGCGGCGCATCATCGAGCAGGCGGTGGTCGAGCGCCTCGCGGCGGGGCC
GGGCGGCAAGCGCCTGCGCGGCGTGATGACGATCGTCGAACGCGAGCGCGGCGCGTTCGAGCGGCGCGATTTCGCGGCCT
GCGTGCGTCTGTCGGGCGAGTTCCACACGGCGCTCGCCGCGCTGACCGGCAATACCGTGCTGTGCGATTGCCTGAACGGG
CTGGTCGCGCGCTCGACGCTGATGTCCTCGCTCTACGAATCGCACGGCCGCGGTTCCTGCTCGTTCGACGAGCACGCGCT
GATCGCGGCGGCGCTGGAGGCGGGCGACGGGCGCGAGGCCGCGCAGCGGATGGCGCATCACCTGCAACAGGTGGAACTGA
GAATGCTGGACCGGCCCGCACAGGGCACGGTCGACCTGCGCGACGTGTTCGGCGGCACGGGCTGA

Upstream 100 bases:

>100_bases
CTCCTCATGAGAGCCGAAACATGCCCGATTGCGGTGCAATGATAGTGATGGAAATTGTTGACAATGTTTATGTCCACTCT
AGGATGCTGAACATAACGAG

Downstream 100 bases:

>100_bases
CGTCCCGTGCGCCGCGCCCGCGCCGACCGGACGGATTGACCGGATGCTGGCGGCAGCCTCGCGCTGCCGCAGGCGGGCGC
GGCCCCACACGAGGCGGGCC

Product: putative GntR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MTNMMKKATAAPVSAAEAIAERIRAAILEHRLAPGAKLTEAQLCDVFGVKRGTIRQALALLATDRLVDLEPNRGAFVASP
TLQDVHEVFEMRRIIEQAVVERLAAGPGGKRLRGVMTIVERERGAFERRDFAACVRLSGEFHTALAALTGNTVLCDCLNG
LVARSTLMSSLYESHGRGSCSFDEHALIAAALEAGDGREAAQRMAHHLQQVELRMLDRPAQGTVDLRDVFGGTG

Sequences:

>Translated_234_residues
MTNMMKKATAAPVSAAEAIAERIRAAILEHRLAPGAKLTEAQLCDVFGVKRGTIRQALALLATDRLVDLEPNRGAFVASP
TLQDVHEVFEMRRIIEQAVVERLAAGPGGKRLRGVMTIVERERGAFERRDFAACVRLSGEFHTALAALTGNTVLCDCLNG
LVARSTLMSSLYESHGRGSCSFDEHALIAAALEAGDGREAAQRMAHHLQQVELRMLDRPAQGTVDLRDVFGGTG
>Mature_233_residues
TNMMKKATAAPVSAAEAIAERIRAAILEHRLAPGAKLTEAQLCDVFGVKRGTIRQALALLATDRLVDLEPNRGAFVASPT
LQDVHEVFEMRRIIEQAVVERLAAGPGGKRLRGVMTIVERERGAFERRDFAACVRLSGEFHTALAALTGNTVLCDCLNGL
VARSTLMSSLYESHGRGSCSFDEHALIAAALEAGDGREAAQRMAHHLQQVELRMLDRPAQGTVDLRDVFGGTG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=214, Percent_Identity=26.1682242990654, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25258; Mature: 25127

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNMMKKATAAPVSAAEAIAERIRAAILEHRLAPGAKLTEAQLCDVFGVKRGTIRQALAL
CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
LATDRLVDLEPNRGAFVASPTLQDVHEVFEMRRIIEQAVVERLAAGPGGKRLRGVMTIVE
HHHHHHEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
RERGAFERRDFAACVRLSGEFHTALAALTGNTVLCDCLNGLVARSTLMSSLYESHGRGSC
HHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SFDEHALIAAALEAGDGREAAQRMAHHLQQVELRMLDRPAQGTVDLRDVFGGTG
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCC
>Mature Secondary Structure 
TNMMKKATAAPVSAAEAIAERIRAAILEHRLAPGAKLTEAQLCDVFGVKRGTIRQALAL
CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
LATDRLVDLEPNRGAFVASPTLQDVHEVFEMRRIIEQAVVERLAAGPGGKRLRGVMTIVE
HHHHHHEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
RERGAFERRDFAACVRLSGEFHTALAALTGNTVLCDCLNGLVARSTLMSSLYESHGRGSC
HHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SFDEHALIAAALEAGDGREAAQRMAHHLQQVELRMLDRPAQGTVDLRDVFGGTG
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]