| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is pucI [H]
Identifier: 238026938
GI number: 238026938
Start: 1433386
End: 1434870
Strand: Direct
Name: pucI [H]
Synonym: bglu_1g13100
Alternate gene names: 238026938
Gene position: 1433386-1434870 (Clockwise)
Preceding gene: 238026937
Following gene: 238026939
Centisome position: 36.69
GC content: 67.27
Gene sequence:
>1485_bases ATGGCTCAGTTCAGCATTGCGCCGGAAAGCCCCCCCTATCATCCGGACTCCACGAACCGTGCGGACCCTGGCCCGGGTTC GCCGGGCCGCTACAGCGAGCGGCTCTACAACGACGATCTCGCGCCGCTCGAGCGGCAGGGCTGGGGCGCCTATAACATCT TCGCGTTCTGGATGTCGGACGTCCACAGCGTGGGCGGCTACGTGTTCGCGGGCAGCCTGTTCGCACTCGGCCTGACGAGC TGGCAGGTGCTGGTGTCGCTGCTGGTCGGGATCACCATCGTCAACCTGCTCTGCAACCTGATCGCCAAGCCGAGCCAGCA GTTGGGCGTGCCGTATCCGGTGGCCTGCCGCGCCACCTTCGGCGTACTCGGCGCGAACGTGCCGGCCGTGATCCGCGGGC TGATCGCCGTGGCCTGGTACGGCATCCAGACCTATCTGGCCTCGAGCGCGCTGGTGGTGGTGGTGCTGAAGTTCGTGCCG CAGTGGATGCCCTACGCGGATGTTCATCAGCACGGCCTGCTCGGGCTGTCCGCGCTCGGCTGGGCCGGCTTCATGCTGCT CTGGGTGCTGCAGGCGCTGGTGTTCTGGAACGGCATGGAGACCATCAAGAAGTTCATCGACTTCGCGGGGCCGGCCGTCT ACGTGGTGATGTTCGCGCTGGCCGGCTACATGGTCTGGCGCGCCGGCTGGCGCAACATCGGCATCAACCTGGGCGGCGTG CGCTACCACGGTGCCGAGGCGATCCCGGTGATGCTCACGGCGATCGCGCTGGTGGTCTCGTACTTCTCCGGGCCGATGCT CAATTTCGGCGATTTCTCGCGCTACTGCGGCAGCTTCGGCGCGGTGAAGCGCGGCAATTTCTGGGGCCTGCCGGTCAATT TCCTGGCGTTCTCGCTGGTCACCGTGATCACCACGGCCGCCACGCTGCCGGTGTTCGGCGAACTGCTGACCGACCCGGTC GCCACCGTCGGACGCATCGATCATCCGACCGCCGTGATCCTCGGCGCGCTGACCTTCACGGTCGCCACCATCGGCATCAA CATCGTCGCGAACTTCGTGTCGCCCGCCTTCGATTTCTCCAACGTCGCGCCGCGGCGCATCAGCTGGCGCGCGGGCGGCA TGCTGGCCGCGGTCGCCTCGGTGTTCATCACGCCCTGGAACCTGTTCAACAATCCGGCGGTGATCCACTATACGCTCGAC GTGCTCGGCAGCTTCATCGGGCCGCTGTACGGCGTGCTGATCGTCGATTTCTACCTGATCAAGCGCGGCCGGCTGCTGCG CGACGAGCTCTACACGCTGTCGGAGACGGGCGCCTACTGGTATCGCGGCGGCGTGAACCGGCGCGCGGTGCTGGCGCTGC TGCCGGCCGCCGCGCTGGCCGTGGCCTGCGTGATGGTGCCGGCGCTGGCCGGCCTCGCGAACTTCTCGTGGTTCGTCGGC GCGCTGCTGGGCGGCCTGTTCTATCGGATCATGGCGCGGCACTGA
Upstream 100 bases:
>100_bases GGCAGCCTCGCGCTGCCGCAGGCGGGCGCGGCCCCACACGAGGCGGGCCGCGGTTTCAACGACGATCGCGCGGCCCGACC GCGGCAGGCAAGGAGATGTC
Downstream 100 bases:
>100_bases ACCAGGACGACCACATGAAGATCAAGCTGATCAACCCGAACACCACGCAGCGCATGACCGAGGCGATGGGGCGCTGCGCG CGCGAGACGGTGAACGCCGG
Product: NCS1 nucleoside transporter family protein
Products: NA
Alternate protein names: Allantoin transport protein [H]
Number of amino acids: Translated: 494; Mature: 493
Protein sequence:
>494_residues MAQFSIAPESPPYHPDSTNRADPGPGSPGRYSERLYNDDLAPLERQGWGAYNIFAFWMSDVHSVGGYVFAGSLFALGLTS WQVLVSLLVGITIVNLLCNLIAKPSQQLGVPYPVACRATFGVLGANVPAVIRGLIAVAWYGIQTYLASSALVVVVLKFVP QWMPYADVHQHGLLGLSALGWAGFMLLWVLQALVFWNGMETIKKFIDFAGPAVYVVMFALAGYMVWRAGWRNIGINLGGV RYHGAEAIPVMLTAIALVVSYFSGPMLNFGDFSRYCGSFGAVKRGNFWGLPVNFLAFSLVTVITTAATLPVFGELLTDPV ATVGRIDHPTAVILGALTFTVATIGINIVANFVSPAFDFSNVAPRRISWRAGGMLAAVASVFITPWNLFNNPAVIHYTLD VLGSFIGPLYGVLIVDFYLIKRGRLLRDELYTLSETGAYWYRGGVNRRAVLALLPAAALAVACVMVPALAGLANFSWFVG ALLGGLFYRIMARH
Sequences:
>Translated_494_residues MAQFSIAPESPPYHPDSTNRADPGPGSPGRYSERLYNDDLAPLERQGWGAYNIFAFWMSDVHSVGGYVFAGSLFALGLTS WQVLVSLLVGITIVNLLCNLIAKPSQQLGVPYPVACRATFGVLGANVPAVIRGLIAVAWYGIQTYLASSALVVVVLKFVP QWMPYADVHQHGLLGLSALGWAGFMLLWVLQALVFWNGMETIKKFIDFAGPAVYVVMFALAGYMVWRAGWRNIGINLGGV RYHGAEAIPVMLTAIALVVSYFSGPMLNFGDFSRYCGSFGAVKRGNFWGLPVNFLAFSLVTVITTAATLPVFGELLTDPV ATVGRIDHPTAVILGALTFTVATIGINIVANFVSPAFDFSNVAPRRISWRAGGMLAAVASVFITPWNLFNNPAVIHYTLD VLGSFIGPLYGVLIVDFYLIKRGRLLRDELYTLSETGAYWYRGGVNRRAVLALLPAAALAVACVMVPALAGLANFSWFVG ALLGGLFYRIMARH >Mature_493_residues AQFSIAPESPPYHPDSTNRADPGPGSPGRYSERLYNDDLAPLERQGWGAYNIFAFWMSDVHSVGGYVFAGSLFALGLTSW QVLVSLLVGITIVNLLCNLIAKPSQQLGVPYPVACRATFGVLGANVPAVIRGLIAVAWYGIQTYLASSALVVVVLKFVPQ WMPYADVHQHGLLGLSALGWAGFMLLWVLQALVFWNGMETIKKFIDFAGPAVYVVMFALAGYMVWRAGWRNIGINLGGVR YHGAEAIPVMLTAIALVVSYFSGPMLNFGDFSRYCGSFGAVKRGNFWGLPVNFLAFSLVTVITTAATLPVFGELLTDPVA TVGRIDHPTAVILGALTFTVATIGINIVANFVSPAFDFSNVAPRRISWRAGGMLAAVASVFITPWNLFNNPAVIHYTLDV LGSFIGPLYGVLIVDFYLIKRGRLLRDELYTLSETGAYWYRGGVNRRAVLALLPAAALAVACVMVPALAGLANFSWFVGA LLGGLFYRIMARH
Specific function: Transport of allantoin [H]
COG id: COG1953
COG function: function code FH; Cytosine/uracil/thiamine/allantoin permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the purine-cytosine permease family [H]
Homologues:
Organism=Escherichia coli, GI87081749, Length=472, Percent_Identity=27.3305084745763, Blast_Score=180, Evalue=2e-46, Organism=Saccharomyces cerevisiae, GI6319495, Length=452, Percent_Identity=25, Blast_Score=145, Evalue=2e-35, Organism=Saccharomyces cerevisiae, GI6322219, Length=453, Percent_Identity=23.841059602649, Blast_Score=144, Evalue=3e-35, Organism=Saccharomyces cerevisiae, GI6319429, Length=506, Percent_Identity=24.3083003952569, Blast_Score=129, Evalue=7e-31, Organism=Saccharomyces cerevisiae, GI6323266, Length=472, Percent_Identity=22.0338983050847, Blast_Score=94, Evalue=5e-20, Organism=Saccharomyces cerevisiae, GI6324766, Length=454, Percent_Identity=21.1453744493392, Blast_Score=91, Evalue=5e-19, Organism=Saccharomyces cerevisiae, GI6324645, Length=474, Percent_Identity=21.5189873417722, Blast_Score=88, Evalue=3e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001248 - InterPro: IPR012681 [H]
Pfam domain/function: PF02133 Transp_cyt_pur [H]
EC number: NA
Molecular weight: Translated: 53464; Mature: 53333
Theoretical pI: Translated: 9.25; Mature: 9.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQFSIAPESPPYHPDSTNRADPGPGSPGRYSERLYNDDLAPLERQGWGAYNIFAFWMSD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHCCCCHHHHHHHHHHH VHSVGGYVFAGSLFALGLTSWQVLVSLLVGITIVNLLCNLIAKPSQQLGVPYPVACRATF HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHH GVLGANVPAVIRGLIAVAWYGIQTYLASSALVVVVLKFVPQWMPYADVHQHGLLGLSALG HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHH WAGFMLLWVLQALVFWNGMETIKKFIDFAGPAVYVVMFALAGYMVWRAGWRNIGINLGGV HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHCCEEECCE RYHGAEAIPVMLTAIALVVSYFSGPMLNFGDFSRYCGSFGAVKRGNFWGLPVNFLAFSLV EECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH TVITTAATLPVFGELLTDPVATVGRIDHPTAVILGALTFTVATIGINIVANFVSPAFDFS HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC NVAPRRISWRAGGMLAAVASVFITPWNLFNNPAVIHYTLDVLGSFIGPLYGVLIVDFYLI CCCCCCCCCCCCHHHHHHHHHHHCCHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH KRGRLLRDELYTLSETGAYWYRGGVNRRAVLALLPAAALAVACVMVPALAGLANFSWFVG HCCHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALLGGLFYRIMARH HHHHHHHHHHHHCC >Mature Secondary Structure AQFSIAPESPPYHPDSTNRADPGPGSPGRYSERLYNDDLAPLERQGWGAYNIFAFWMSD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHCCCCHHHHHHHHHHH VHSVGGYVFAGSLFALGLTSWQVLVSLLVGITIVNLLCNLIAKPSQQLGVPYPVACRATF HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHH GVLGANVPAVIRGLIAVAWYGIQTYLASSALVVVVLKFVPQWMPYADVHQHGLLGLSALG HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHH WAGFMLLWVLQALVFWNGMETIKKFIDFAGPAVYVVMFALAGYMVWRAGWRNIGINLGGV HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHCCEEECCE RYHGAEAIPVMLTAIALVVSYFSGPMLNFGDFSRYCGSFGAVKRGNFWGLPVNFLAFSLV EECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH TVITTAATLPVFGELLTDPVATVGRIDHPTAVILGALTFTVATIGINIVANFVSPAFDFS HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC NVAPRRISWRAGGMLAAVASVFITPWNLFNNPAVIHYTLDVLGSFIGPLYGVLIVDFYLI CCCCCCCCCCCCHHHHHHHHHHHCCHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH KRGRLLRDELYTLSETGAYWYRGGVNRRAVLALLPAAALAVACVMVPALAGLANFSWFVG HCCHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALLGGLFYRIMARH HHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377; 11344136 [H]