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The map label for this gene is ydcN [C]

Identifier: 238026932

GI number: 238026932

Start: 1428084

End: 1428653

Strand: Reverse

Name: ydcN [C]

Synonym: bglu_1g13040

Alternate gene names: 238026932

Gene position: 1428653-1428084 (Counterclockwise)

Preceding gene: 238026944

Following gene: 238026931

Centisome position: 36.57

GC content: 68.25

Gene sequence:

>570_bases
TTGGGGGCGATTCGTCTGAAGCTGCTGAGAAAACAGCTCGGCCTGAGCCTGCAGGACCTGGCCGAGCGCGCGGGCCTGAC
GAAGAGCTATCTGTCGAAGGTCGAGCGCGGCCTCAGCACGCCGTCGGTGGCGGTCGCGATGCAGCTTGCGCAGGCGCTGC
ACGTCGAGGTCGGGCAGTTGTTCTCGGCCGACGGCGACGAACAGGCGATCACCGTGGTGCGGGCCGACGAGCGGCTGCGC
ATGAGCCGCGCGCCGGACGACGCGCAAAGCGGCTACGAGGTGATCGCGGCCGAAGCGGGACGCAAGCGGCTGCTGCCGTT
CATGATCCGCCCGGCGCACGATTTCACGACGTCCGAATTCAGGGAACACGCGGGCGAGGAATTCCTGTTCGTTCACAGCG
GCAGGATCGAGATCGATTTCGCGTCGCAGAAGGTCACGCTCGCGACCGGCGACGCCGTCTACTTCAACGCGCAGGTGCCG
CACCGGATCCGCTCGCTGGGCGCGAAGACGGCGCAAGTGCTGCTCGTGATCAGCGGCGACGAGCCGGCCGCCGGCACCGC
GCCGTCCTGA

Upstream 100 bases:

>100_bases
ACCGGCGGATGTCGGGCGACCGGCATCGTGCCGACAGTACACGCTGGGTATTATATGACACGACGTGTCATTCAACGATA
AATCAATGAAGGGGAAAGCC

Downstream 100 bases:

>100_bases
GCACGGCGCGCCGCGCGCAGCAACCGGATGCCCTCGCGGGCATGCCGCGCGTGCCTGCTCGACGGCCCTTCTGGTTCGCA
TTCCTGATCGACGGAATCGA

Product: DNA-binding protein

Products: NA

Alternate protein names: Transcriptional Regulator XRE Family; XRE Family Transcriptional Regulator; Cro/CI Family Transcriptional Regulator; MerR Family Transcriptional Regulator; Cupin 2 Domain-Containing Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Cupin 2 Conserved Barrel Domain Protein; Transcriptional Regulator MerR Family; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Merr Family; Transcriptional Regulator HTH_3 Family; Transcriptional Regulator-Like Protein; Cupin Domain Protein; Transcriptional Regulatory Protein; Epoxidase; Cupin 2 Barrel Domain-Containing Protein; Helix-Turn-Helix Domain Protein; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein; Transcription Regulator Protein; Transcriptional Regulator Protein; Transcription Regulator; XRE Family-Like Protein; HTH_3family Transcriptional Regulator

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MGAIRLKLLRKQLGLSLQDLAERAGLTKSYLSKVERGLSTPSVAVAMQLAQALHVEVGQLFSADGDEQAITVVRADERLR
MSRAPDDAQSGYEVIAAEAGRKRLLPFMIRPAHDFTTSEFREHAGEEFLFVHSGRIEIDFASQKVTLATGDAVYFNAQVP
HRIRSLGAKTAQVLLVISGDEPAAGTAPS

Sequences:

>Translated_189_residues
MGAIRLKLLRKQLGLSLQDLAERAGLTKSYLSKVERGLSTPSVAVAMQLAQALHVEVGQLFSADGDEQAITVVRADERLR
MSRAPDDAQSGYEVIAAEAGRKRLLPFMIRPAHDFTTSEFREHAGEEFLFVHSGRIEIDFASQKVTLATGDAVYFNAQVP
HRIRSLGAKTAQVLLVISGDEPAAGTAPS
>Mature_188_residues
GAIRLKLLRKQLGLSLQDLAERAGLTKSYLSKVERGLSTPSVAVAMQLAQALHVEVGQLFSADGDEQAITVVRADERLRM
SRAPDDAQSGYEVIAAEAGRKRLLPFMIRPAHDFTTSEFREHAGEEFLFVHSGRIEIDFASQKVTLATGDAVYFNAQVPH
RIRSLGAKTAQVLLVISGDEPAAGTAPS

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20486; Mature: 20354

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGAIRLKLLRKQLGLSLQDLAERAGLTKSYLSKVERGLSTPSVAVAMQLAQALHVEVGQL
CCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
FSADGDEQAITVVRADERLRMSRAPDDAQSGYEVIAAEAGRKRLLPFMIRPAHDFTTSEF
HCCCCCCCEEEEEECCHHHHHCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCHHHH
REHAGEEFLFVHSGRIEIDFASQKVTLATGDAVYFNAQVPHRIRSLGAKTAQVLLVISGD
HHHCCCEEEEEECCEEEEEECCCEEEEEECCEEEEECCCCHHHHHCCCCCEEEEEEEECC
EPAAGTAPS
CCCCCCCCC
>Mature Secondary Structure 
GAIRLKLLRKQLGLSLQDLAERAGLTKSYLSKVERGLSTPSVAVAMQLAQALHVEVGQL
CHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
FSADGDEQAITVVRADERLRMSRAPDDAQSGYEVIAAEAGRKRLLPFMIRPAHDFTTSEF
HCCCCCCCEEEEEECCHHHHHCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCHHHH
REHAGEEFLFVHSGRIEIDFASQKVTLATGDAVYFNAQVPHRIRSLGAKTAQVLLVISGD
HHHCCCEEEEEECCEEEEEECCCEEEEEECCEEEEECCCCHHHHHCCCCCEEEEEEEECC
EPAAGTAPS
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA