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The map label for this gene is yjfH [C]

Identifier: 238026918

GI number: 238026918

Start: 1410481

End: 1411263

Strand: Direct

Name: yjfH [C]

Synonym: bglu_1g12880

Alternate gene names: 238026918

Gene position: 1410481-1411263 (Clockwise)

Preceding gene: 238026917

Following gene: 238026920

Centisome position: 36.11

GC content: 73.18

Gene sequence:

>783_bases
ATGAAGTCGATCAGCTCGCGCGACAACCCGCTCTACAAGCGCCTGAAGGCGCTCGCGGGCTCGACGCAACAACAACGCCG
CGGCGCCCAGGCGCTGCTCGAAGGCCTGCACCTGGCCGCGGCCTACCTCGACGCGAACGGCCAGCCCGAACTCTGCGTCG
TCACCGACGGTGCGCTTGCGCACGACGAGACGCGCGCGATCGTCGCGCGCGTCGAGCCGCAGCGCGTGGTGTCGCTGCCC
GATGCGCTGTTCGGGCAGCTCTCGAGCGTCGTCAACGGCGTCGGCCTGCTGCTGCTGGTCGAGCGGCCCGCCGCGGCGCT
GCCCGAGCGCGTGACGGGCACGGTGGTGGTGCTCGACGGCGTGCAGGATGCCGGCAACGTCGGCTCGATCCTGCGCAGCG
CGGCCGCGGCCGGCGTCGCCCAGGTGTTCTGCGTGAGCGGCACGGCCTACGCGTGGTCGTCGAAGGTGCTGCGCTCGGGC
ATGGGCGCGCATTTCCTGCTCGACATCCACGAGGACGTCGAGGCGGCCGACCTGATCGCGCGGCTCGGCGTGCCGGTCGC
GCTGACCGATTCGCACGGCGCCCGCGCGATCGACGACTGCGACCTGAGCGGCCCGGTGGCCTGGGTGTTCGGCAACGAAG
GCGCGGGCGTGTCGGCGCCGTGGCGCGAGGCGGCCAAGCTGCGCGTGACGATCCCGCAGCCGGGCGGCATGGAATCGCTG
AACGTGGCGGCCGCCGCCGCCGTCTGCCTGTTCGAGCAGTGCCGCCAGCAGCGCAGGCGCTGA

Upstream 100 bases:

>100_bases
ACCTCGCGGCGCTGCGCGAACACGGCCCGTGCGAGCATCACCGCCGCTCGTTCGCGCCGGTACGCGCCGCGCTCGATCTC
ACCCGATAGCGGACGGCGCG

Downstream 100 bases:

>100_bases
GGCCCGGCGCGTCAGCAAGCCAGCAGGCAAGGAAACGGCGGATGACCCGGGTCATCCGCCGTTGTTTCATGTGCGCCGTG
CCGGCCCGGCGCGCTCAGTA

Product: RNA methyltransferase, TrmH family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MKSISSRDNPLYKRLKALAGSTQQQRRGAQALLEGLHLAAAYLDANGQPELCVVTDGALAHDETRAIVARVEPQRVVSLP
DALFGQLSSVVNGVGLLLLVERPAAALPERVTGTVVVLDGVQDAGNVGSILRSAAAAGVAQVFCVSGTAYAWSSKVLRSG
MGAHFLLDIHEDVEAADLIARLGVPVALTDSHGARAIDDCDLSGPVAWVFGNEGAGVSAPWREAAKLRVTIPQPGGMESL
NVAAAAAVCLFEQCRQQRRR

Sequences:

>Translated_260_residues
MKSISSRDNPLYKRLKALAGSTQQQRRGAQALLEGLHLAAAYLDANGQPELCVVTDGALAHDETRAIVARVEPQRVVSLP
DALFGQLSSVVNGVGLLLLVERPAAALPERVTGTVVVLDGVQDAGNVGSILRSAAAAGVAQVFCVSGTAYAWSSKVLRSG
MGAHFLLDIHEDVEAADLIARLGVPVALTDSHGARAIDDCDLSGPVAWVFGNEGAGVSAPWREAAKLRVTIPQPGGMESL
NVAAAAAVCLFEQCRQQRRR
>Mature_260_residues
MKSISSRDNPLYKRLKALAGSTQQQRRGAQALLEGLHLAAAYLDANGQPELCVVTDGALAHDETRAIVARVEPQRVVSLP
DALFGQLSSVVNGVGLLLLVERPAAALPERVTGTVVVLDGVQDAGNVGSILRSAAAAGVAQVFCVSGTAYAWSSKVLRSG
MGAHFLLDIHEDVEAADLIARLGVPVALTDSHGARAIDDCDLSGPVAWVFGNEGAGVSAPWREAAKLRVTIPQPGGMESL
NVAAAAAVCLFEQCRQQRRR

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Escherichia coli, GI1790623, Length=146, Percent_Identity=29.4520547945205, Blast_Score=64, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24666840, Length=282, Percent_Identity=28.0141843971631, Blast_Score=79, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27219; Mature: 27219

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSISSRDNPLYKRLKALAGSTQQQRRGAQALLEGLHLAAAYLDANGQPELCVVTDGALA
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
HDETRAIVARVEPQRVVSLPDALFGQLSSVVNGVGLLLLVERPAAALPERVTGTVVVLDG
CCHHHHEEEECCHHHHHCCHHHHHHHHHHHHCCCEEEEEECCCHHHCCHHCCCEEEEEEC
VQDAGNVGSILRSAAAAGVAQVFCVSGTAYAWSSKVLRSGMGAHFLLDIHEDVEAADLIA
CCCCCHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHH
RLGVPVALTDSHGARAIDDCDLSGPVAWVFGNEGAGVSAPWREAAKLRVTIPQPGGMESL
HHCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCHH
NVAAAAAVCLFEQCRQQRRR
HHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKSISSRDNPLYKRLKALAGSTQQQRRGAQALLEGLHLAAAYLDANGQPELCVVTDGALA
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
HDETRAIVARVEPQRVVSLPDALFGQLSSVVNGVGLLLLVERPAAALPERVTGTVVVLDG
CCHHHHEEEECCHHHHHCCHHHHHHHHHHHHCCCEEEEEECCCHHHCCHHCCCEEEEEEC
VQDAGNVGSILRSAAAAGVAQVFCVSGTAYAWSSKVLRSGMGAHFLLDIHEDVEAADLIA
CCCCCHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHH
RLGVPVALTDSHGARAIDDCDLSGPVAWVFGNEGAGVSAPWREAAKLRVTIPQPGGMESL
HHCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCHH
NVAAAAAVCLFEQCRQQRRR
HHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]