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The map label for this gene is rnhB [H]

Identifier: 238026917

GI number: 238026917

Start: 1409822

End: 1410469

Strand: Direct

Name: rnhB [H]

Synonym: bglu_1g12870

Alternate gene names: 238026917

Gene position: 1409822-1410469 (Clockwise)

Preceding gene: 238026916

Following gene: 238026918

Centisome position: 36.09

GC content: 71.6

Gene sequence:

>648_bases
ATGAAGGCCGTCCGTACCAGGCGCACCGCCGCGTCGCTGGCCGCCGAGCAGGCCGGCTTCAGCTTCGACGCGCCGGGCGA
GATCGTCTGCGGCGTCGACGAGGCGGGCCGCGGGCCGCTCGCCGGGCCGGTGGTCGCGGCCGCCGTGATCCTCGATCCGG
CGCGGCCGATCGTCGGCCTCGACGATTCGAAGGCGCTGAGCGCAAAGAAGCGCGAGCGGCTCTACGCCGAGATCGTCGAG
CGCGCGCAGGCCTATTGCGTGGCCTCCGCCAGCGTCGAGGAAATCGACACGCTGAACATCCTGCACGCCACCATGCTGGC
GATGAAGCGCGCGGTGGAGGGGCTCGCGGTGCTGCCGACGCTCGCGCAGATCGACGGCAACCGCTGCCCGACGCTCGCGA
TCCGCAGCGAGGCGATCATCGGCGGCGATGCGCTGGTGCCGAGCATCTCGGCCGCCTCGATCCTCGCCAAGGTCACGCGC
GACCGGCTGCTGGTCGATCTGCACGCGAGCTTTCCGCTCTACGGCTTCGACGTCCATTCCGGCTACGGCACGCCCAAGCA
CCTCGCGGCGCTGCGCGAACACGGCCCGTGCGAGCATCACCGCCGCTCGTTCGCGCCGGTACGCGCCGCGCTCGATCTCA
CCCGATAG

Upstream 100 bases:

>100_bases
CCGAAATCTTCACGCAGCTGCATCTGTCGCTGCGTCAGAACACCGCCGTGCGCGCCGCGGAGGCGGTCGAGCGCGTGATC
GCGAGCCGGAAGCCACGCGC

Downstream 100 bases:

>100_bases
CGGACGGCGCGATGAAGTCGATCAGCTCGCGCGACAACCCGCTCTACAAGCGCCTGAAGGCGCTCGCGGGCTCGACGCAA
CAACAACGCCGCGGCGCCCA

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MKAVRTRRTAASLAAEQAGFSFDAPGEIVCGVDEAGRGPLAGPVVAAAVILDPARPIVGLDDSKALSAKKRERLYAEIVE
RAQAYCVASASVEEIDTLNILHATMLAMKRAVEGLAVLPTLAQIDGNRCPTLAIRSEAIIGGDALVPSISAASILAKVTR
DRLLVDLHASFPLYGFDVHSGYGTPKHLAALREHGPCEHHRRSFAPVRAALDLTR

Sequences:

>Translated_215_residues
MKAVRTRRTAASLAAEQAGFSFDAPGEIVCGVDEAGRGPLAGPVVAAAVILDPARPIVGLDDSKALSAKKRERLYAEIVE
RAQAYCVASASVEEIDTLNILHATMLAMKRAVEGLAVLPTLAQIDGNRCPTLAIRSEAIIGGDALVPSISAASILAKVTR
DRLLVDLHASFPLYGFDVHSGYGTPKHLAALREHGPCEHHRRSFAPVRAALDLTR
>Mature_215_residues
MKAVRTRRTAASLAAEQAGFSFDAPGEIVCGVDEAGRGPLAGPVVAAAVILDPARPIVGLDDSKALSAKKRERLYAEIVE
RAQAYCVASASVEEIDTLNILHATMLAMKRAVEGLAVLPTLAQIDGNRCPTLAIRSEAIIGGDALVPSISAASILAKVTR
DRLLVDLHASFPLYGFDVHSGYGTPKHLAALREHGPCEHHRRSFAPVRAALDLTR

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=187, Percent_Identity=60.9625668449198, Blast_Score=221, Evalue=4e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 22763; Mature: 22763

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAVRTRRTAASLAAEQAGFSFDAPGEIVCGVDEAGRGPLAGPVVAAAVILDPARPIVGL
CCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCEECC
DDSKALSAKKRERLYAEIVERAQAYCVASASVEEIDTLNILHATMLAMKRAVEGLAVLPT
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAQIDGNRCPTLAIRSEAIIGGDALVPSISAASILAKVTRDRLLVDLHASFPLYGFDVHS
HHHCCCCCCCEEEEECCEEECCCHHCCCHHHHHHHHHHHHHHEEEEEECCCCEEEEEECC
GYGTPKHLAALREHGPCEHHRRSFAPVRAALDLTR
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKAVRTRRTAASLAAEQAGFSFDAPGEIVCGVDEAGRGPLAGPVVAAAVILDPARPIVGL
CCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCEECC
DDSKALSAKKRERLYAEIVERAQAYCVASASVEEIDTLNILHATMLAMKRAVEGLAVLPT
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAQIDGNRCPTLAIRSEAIIGGDALVPSISAASILAKVTRDRLLVDLHASFPLYGFDVHS
HHHCCCCCCCEEEEECCEEECCCHHCCCHHHHHHHHHHHHHHEEEEEECCCCEEEEEECC
GYGTPKHLAALREHGPCEHHRRSFAPVRAALDLTR
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA