| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is gcp [H]
Identifier: 238024937
GI number: 238024937
Start: 2011549
End: 2012589
Strand: Direct
Name: gcp [H]
Synonym: bglu_2g15920
Alternate gene names: 238024937
Gene position: 2011549-2012589 (Clockwise)
Preceding gene: 238024931
Following gene: 238024942
Centisome position: 71.15
GC content: 70.03
Gene sequence:
>1041_bases ATGCTTGTCCTCGGCATCGAAAGCTCGTGCGACGAAACCGGCCTCGCGCTCTACGACACCGAGCGCGGCCTCGTCTCGCA CGCGCTCCATTCGCAGATCGCCATGCACCGTGAATACGGCGGCGTCGTGCCCGAGCTCGCCTCGCGCGATCACATCCGCC GCGCGCTGCCGCTGCTCGAGCAGGTGTTCGCCGCAGGCGGCGCGCGGCACGAGGACGTCGACGCGATCGCGTTCACACAA GGCCCTGGCCTCGCGGGCGCGCTGCTGGTCGGCGCGAGCATCGCGAACGCGCTGGCGATGGCCTGGGACAAGCCCGCTAT CGGCATCCATCATCTCGAAGGGCATCTGCTCTCGCCGCTGCTGGTGGATGCGCCGCCGCCGTTCCCGTTCGTCGCGCTGC TGGTGTCGGGCGGCCACACGCAGCTGATGCGGGTGACCGGGGTAGGCGTCTACGAGACGCTGGGCGAAACGCTCGACGAC GCGGCCGGCGAAGCGTTCGACAAGACCGCCAAGCTGATCGGCCTCGGCTATCCGGGCGGCCCGGAAGTCTCGAAGCTGGC CGAGCACGGCACCCCCGGCGCGGTCGCGCTGCCGCGGCCGATGCTGCACTCGGGCGATCTCGATTTCAGCTTCAGCGGCC TGAAGACGGCCGTGCTCACGCAGATGAAGAAGATCGAGGCGAGCGGCGCGGCAGGCGAAGCGCTCGATGCGGCGAAGGCC GATCTCGCGCGCGGCTTCGTCGACGCGGCCGTCGATGTGCTGGCCGCCAAATCGCTCGCGGCGCTGAAGCAGACCAAGCT GAAACGTCTGGTGGTGGCAGGCGGCGTCGGCGCGAATCGGCAACTGCGCGCGGCACTGTCGGCCGCCGCGAAGCAGCGCG GCTTCGAGGTCCACTACCCCGATCTCGCGCTCTGCACCGACAACGGCGCGATGATCGCGCTGGCCGGCGCATTGCGCCTC GCACGCTGGCCGGATCAGGCGAATCGCGACTACGCGTTCACCGTGAAGCCGAGGTGGGACCTGGCCGCGCTCGCTCGCTG A
Upstream 100 bases:
>100_bases GCGGCATCGCCCGCGCTCCGGCCAGGCGCCGAAACGGGACGCGCTGGTATACTGCCCGGTTGCCATTGCCTATCCGGCCC TCCGGCCGCTCCACCGAACC
Downstream 100 bases:
>100_bases GCACGGGGCGCGCCGTCGCCCCCGAGCGCCCCGCCGCGACGAGGGGAGGCCTTTGCCCCTTGCACGCGCCGCATTCAGGC GATCCGCTTGTCGCGCTCGA
Product: UGMP family protein
Products: NA
Alternate protein names: Glycoprotease [H]
Number of amino acids: Translated: 346; Mature: 346
Protein sequence:
>346_residues MLVLGIESSCDETGLALYDTERGLVSHALHSQIAMHREYGGVVPELASRDHIRRALPLLEQVFAAGGARHEDVDAIAFTQ GPGLAGALLVGASIANALAMAWDKPAIGIHHLEGHLLSPLLVDAPPPFPFVALLVSGGHTQLMRVTGVGVYETLGETLDD AAGEAFDKTAKLIGLGYPGGPEVSKLAEHGTPGAVALPRPMLHSGDLDFSFSGLKTAVLTQMKKIEASGAAGEALDAAKA DLARGFVDAAVDVLAAKSLAALKQTKLKRLVVAGGVGANRQLRAALSAAAKQRGFEVHYPDLALCTDNGAMIALAGALRL ARWPDQANRDYAFTVKPRWDLAALAR
Sequences:
>Translated_346_residues MLVLGIESSCDETGLALYDTERGLVSHALHSQIAMHREYGGVVPELASRDHIRRALPLLEQVFAAGGARHEDVDAIAFTQ GPGLAGALLVGASIANALAMAWDKPAIGIHHLEGHLLSPLLVDAPPPFPFVALLVSGGHTQLMRVTGVGVYETLGETLDD AAGEAFDKTAKLIGLGYPGGPEVSKLAEHGTPGAVALPRPMLHSGDLDFSFSGLKTAVLTQMKKIEASGAAGEALDAAKA DLARGFVDAAVDVLAAKSLAALKQTKLKRLVVAGGVGANRQLRAALSAAAKQRGFEVHYPDLALCTDNGAMIALAGALRL ARWPDQANRDYAFTVKPRWDLAALAR >Mature_346_residues MLVLGIESSCDETGLALYDTERGLVSHALHSQIAMHREYGGVVPELASRDHIRRALPLLEQVFAAGGARHEDVDAIAFTQ GPGLAGALLVGASIANALAMAWDKPAIGIHHLEGHLLSPLLVDAPPPFPFVALLVSGGHTQLMRVTGVGVYETLGETLDD AAGEAFDKTAKLIGLGYPGGPEVSKLAEHGTPGAVALPRPMLHSGDLDFSFSGLKTAVLTQMKKIEASGAAGEALDAAKA DLARGFVDAAVDVLAAKSLAALKQTKLKRLVVAGGVGANRQLRAALSAAAKQRGFEVHYPDLALCTDNGAMIALAGALRL ARWPDQANRDYAFTVKPRWDLAALAR
Specific function: Could Be A Metalloprotease. [C]
COG id: COG0533
COG function: function code O; Metal-dependent proteases with possible chaperone activity
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M22 family [H]
Homologues:
Organism=Homo sapiens, GI116812636, Length=336, Percent_Identity=35.4166666666667, Blast_Score=160, Evalue=1e-39, Organism=Homo sapiens, GI8923380, Length=279, Percent_Identity=29.3906810035842, Blast_Score=124, Evalue=1e-28, Organism=Escherichia coli, GI1789445, Length=344, Percent_Identity=57.2674418604651, Blast_Score=390, Evalue=1e-110, Organism=Caenorhabditis elegans, GI17557464, Length=344, Percent_Identity=31.9767441860465, Blast_Score=143, Evalue=2e-34, Organism=Caenorhabditis elegans, GI71995670, Length=329, Percent_Identity=31.0030395136778, Blast_Score=129, Evalue=2e-30, Organism=Saccharomyces cerevisiae, GI6320099, Length=341, Percent_Identity=32.258064516129, Blast_Score=155, Evalue=8e-39, Organism=Saccharomyces cerevisiae, GI6322891, Length=347, Percent_Identity=26.5129682997118, Blast_Score=108, Evalue=1e-24, Organism=Drosophila melanogaster, GI20129063, Length=351, Percent_Identity=32.7635327635328, Blast_Score=166, Evalue=2e-41, Organism=Drosophila melanogaster, GI21357207, Length=322, Percent_Identity=28.2608695652174, Blast_Score=126, Evalue=2e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022450 - InterPro: IPR000905 - InterPro: IPR017861 [H]
Pfam domain/function: PF00814 Peptidase_M22 [H]
EC number: =3.4.24.57 [H]
Molecular weight: Translated: 36130; Mature: 36130
Theoretical pI: Translated: 6.65; Mature: 6.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVLGIESSCDETGLALYDTERGLVSHALHSQIAMHREYGGVVPELASRDHIRRALPLLE CEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH QVFAAGGARHEDVDAIAFTQGPGLAGALLVGASIANALAMAWDKPAIGIHHLEGHLLSPL HHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHCCCE LVDAPPPFPFVALLVSGGHTQLMRVTGVGVYETLGETLDDAAGEAFDKTAKLIGLGYPGG EECCCCCCCEEHHEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC PEVSKLAEHGTPGAVALPRPMLHSGDLDFSFSGLKTAVLTQMKKIEASGAAGEALDAAKA CCHHHHHHCCCCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH DLARGFVDAAVDVLAAKSLAALKQTKLKRLVVAGGVGANRQLRAALSAAAKQRGFEVHYP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCCEEECC DLALCTDNGAMIALAGALRLARWPDQANRDYAFTVKPRWDLAALAR CEEEEECCCCEEEEHHHHHHHCCCCCCCCCEEEEECCCCCHHHHCC >Mature Secondary Structure MLVLGIESSCDETGLALYDTERGLVSHALHSQIAMHREYGGVVPELASRDHIRRALPLLE CEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH QVFAAGGARHEDVDAIAFTQGPGLAGALLVGASIANALAMAWDKPAIGIHHLEGHLLSPL HHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHCCCE LVDAPPPFPFVALLVSGGHTQLMRVTGVGVYETLGETLDDAAGEAFDKTAKLIGLGYPGG EECCCCCCCEEHHEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC PEVSKLAEHGTPGAVALPRPMLHSGDLDFSFSGLKTAVLTQMKKIEASGAAGEALDAAKA CCHHHHHHCCCCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH DLARGFVDAAVDVLAAKSLAALKQTKLKRLVVAGGVGANRQLRAALSAAAKQRGFEVHYP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCCEEECC DLALCTDNGAMIALAGALRLARWPDQANRDYAFTVKPRWDLAALAR CEEEEECCCCEEEEHHHHHHHCCCCCCCCCEEEEECCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA