| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238024931
Identifier: 238024931
GI number: 238024931
Start: 2002971
End: 2004269
Strand: Direct
Name: 238024931
Synonym: bglu_2g15850
Alternate gene names: NA
Gene position: 2002971-2004269 (Clockwise)
Preceding gene: 238024927
Following gene: 238024937
Centisome position: 70.84
GC content: 61.59
Gene sequence:
>1299_bases ATGAGTTACACGATTTCAAATCCACGCTCGACACTGCACGCTCTCGAACCCATCGGCCTCGGCACGCCCGAGGTTGAAAG CCTGCTCAGCTACTTCTGCCGGCTGGCCGTGTCGCATAGCGTGTCTGTGGCGGCGCTTTGCCGGCAAGTCGCCAAAACTG TTGGCTGGGAGCTTTCAGAGAAGCACGAATGGCACGTGGGGAACATCGGCGGCATCGGGGAACCAGCAAGCAACTGGTCT GCCGCGCTCTCAGCTCTTACGAGCGCCGAACGACTCGACAGACTCACACTGCTGCCATGGCGTGACGTTATTGCTCAAAC CAGCCTGGCCGCGACGCGCTCACGTTGGTGTCCGGCATGCTTCGCAGAGGACCGGGACAGCGGCAAAACGCCTTATTTCC GCCTGGCATGGGACGTGGGGGCAGTGAATGTATGCGCCAAGCACAAGGTCGATCTGGTGCACATCTGTCCGGATTGCGGA CGCGCTGACGCGCGGCACAAGTCGGCCTACGTCGTCCCCGGCTGGTGCGCGCACTGCGGGGCTTTTCTCGGCGATGGAGA GCCGCCTGCGCCTGCTTCTCCGGAGGAGCTCTGGAAGGCGACTCAGGTCGGGGCGATGCTGGAAGCTCAAGCGTCACTCG AAGCGCCGCCTGCCCGCCAAGGAATGCTTGACGCGATACAAACGCTTGTTACCCAGGTCGACAACGGAAAGGGAGCAGTT TTTGCGCGGCGTCTGGGCCTGAGCAAGACTACGGTGCATCACTGGTTGAAGGAAGGCGGCGCTCCTGCGTTAACAGCACA TTTGCGCATCGCGTCACAGACCGGATTGCCGCTCCAGCGGTTGCTAACGGGCAATTTGGACGATTGGACTCCGTCCACGG CAGAAATCCACCAGTTGGCGATGCTGTTCCCCGCTGAGACAAAACGGGCGACCGCCCGCTCAATCGACTGGGAGAAGGTT CGCAGCGAATTGCACACGTTCAGCAGACTGCCGTCCATCATTAGCGTAGCGGAGGCAGCACGCCGCCTCGACGTCGATAC CAGGCTGCTGTACCAGAATGCGAACAAGGAAGCGCGCGTCCTTGCCGAACGCTGGAGGCAATATATGCAGCGCCGGAAAG AACAGAGCCTGGTCAATGCCCGCACCGTCATCGAGGCGGCATGCCGGGACATCATCGCCGACGGCAAGGCCATCAACCTG CGGGAGCTTAATGCTCGAGTGCCCAAGGAGGTTCTGGGCAGCATCCGCGGCGTCATAGACGTGCTCCAGGAGGTCAAGGA GGCGCTGGGCGTGAGCTAG
Upstream 100 bases:
>100_bases TGGCCGAAATCCTCGACGGCGAGGAGGCCATCAATCCCGATCTCACCCGCATCATGCGTGGGCCGCAGCGTCAGGCATCA GCTGGCAGAAGGAGTGCCGC
Downstream 100 bases:
>100_bases GCACCCGCACCCCCTTCACAGCGAAAAAGCCGGCGCGCACGCCGGCTTTTTTACGCCCATTCGCGGCTGCACGCCGCGAA CAAAGTTTTCACGCTACCAC
Product: TetR family transcriptional regulator
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 432; Mature: 431
Protein sequence:
>432_residues MSYTISNPRSTLHALEPIGLGTPEVESLLSYFCRLAVSHSVSVAALCRQVAKTVGWELSEKHEWHVGNIGGIGEPASNWS AALSALTSAERLDRLTLLPWRDVIAQTSLAATRSRWCPACFAEDRDSGKTPYFRLAWDVGAVNVCAKHKVDLVHICPDCG RADARHKSAYVVPGWCAHCGAFLGDGEPPAPASPEELWKATQVGAMLEAQASLEAPPARQGMLDAIQTLVTQVDNGKGAV FARRLGLSKTTVHHWLKEGGAPALTAHLRIASQTGLPLQRLLTGNLDDWTPSTAEIHQLAMLFPAETKRATARSIDWEKV RSELHTFSRLPSIISVAEAARRLDVDTRLLYQNANKEARVLAERWRQYMQRRKEQSLVNARTVIEAACRDIIADGKAINL RELNARVPKEVLGSIRGVIDVLQEVKEALGVS
Sequences:
>Translated_432_residues MSYTISNPRSTLHALEPIGLGTPEVESLLSYFCRLAVSHSVSVAALCRQVAKTVGWELSEKHEWHVGNIGGIGEPASNWS AALSALTSAERLDRLTLLPWRDVIAQTSLAATRSRWCPACFAEDRDSGKTPYFRLAWDVGAVNVCAKHKVDLVHICPDCG RADARHKSAYVVPGWCAHCGAFLGDGEPPAPASPEELWKATQVGAMLEAQASLEAPPARQGMLDAIQTLVTQVDNGKGAV FARRLGLSKTTVHHWLKEGGAPALTAHLRIASQTGLPLQRLLTGNLDDWTPSTAEIHQLAMLFPAETKRATARSIDWEKV RSELHTFSRLPSIISVAEAARRLDVDTRLLYQNANKEARVLAERWRQYMQRRKEQSLVNARTVIEAACRDIIADGKAINL RELNARVPKEVLGSIRGVIDVLQEVKEALGVS >Mature_431_residues SYTISNPRSTLHALEPIGLGTPEVESLLSYFCRLAVSHSVSVAALCRQVAKTVGWELSEKHEWHVGNIGGIGEPASNWSA ALSALTSAERLDRLTLLPWRDVIAQTSLAATRSRWCPACFAEDRDSGKTPYFRLAWDVGAVNVCAKHKVDLVHICPDCGR ADARHKSAYVVPGWCAHCGAFLGDGEPPAPASPEELWKATQVGAMLEAQASLEAPPARQGMLDAIQTLVTQVDNGKGAVF ARRLGLSKTTVHHWLKEGGAPALTAHLRIASQTGLPLQRLLTGNLDDWTPSTAEIHQLAMLFPAETKRATARSIDWEKVR SELHTFSRLPSIISVAEAARRLDVDTRLLYQNANKEARVLAERWRQYMQRRKEQSLVNARTVIEAACRDIIADGKAINLR ELNARVPKEVLGSIRGVIDVLQEVKEALGVS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47328; Mature: 47196
Theoretical pI: Translated: 8.28; Mature: 8.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYTISNPRSTLHALEPIGLGTPEVESLLSYFCRLAVSHSVSVAALCRQVAKTVGWELSE CCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC KHEWHVGNIGGIGEPASNWSAALSALTSAERLDRLTLLPWRDVIAQTSLAATRSRWCPAC CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHH FAEDRDSGKTPYFRLAWDVGAVNVCAKHKVDLVHICPDCGRADARHKSAYVVPGWCAHCG HHCCCCCCCCCEEEEEECCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCEECCCHHHHHH AFLGDGEPPAPASPEELWKATQVGAMLEAQASLEAPPARQGMLDAIQTLVTQVDNGKGAV HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHH FARRLGLSKTTVHHWLKEGGAPALTAHLRIASQTGLPLQRLLTGNLDDWTPSTAEIHQLA HHHHHCCCHHHHHHHHHHCCCCEEEHHEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHH MLFPAETKRATARSIDWEKVRSELHTFSRLPSIISVAEAARRLDVDTRLLYQNANKEARV HHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHH LAERWRQYMQRRKEQSLVNARTVIEAACRDIIADGKAINLRELNARVPKEVLGSIRGVID HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCHHHHHHHHHHHH VLQEVKEALGVS HHHHHHHHHCCC >Mature Secondary Structure SYTISNPRSTLHALEPIGLGTPEVESLLSYFCRLAVSHSVSVAALCRQVAKTVGWELSE CCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC KHEWHVGNIGGIGEPASNWSAALSALTSAERLDRLTLLPWRDVIAQTSLAATRSRWCPAC CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHH FAEDRDSGKTPYFRLAWDVGAVNVCAKHKVDLVHICPDCGRADARHKSAYVVPGWCAHCG HHCCCCCCCCCEEEEEECCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCEECCCHHHHHH AFLGDGEPPAPASPEELWKATQVGAMLEAQASLEAPPARQGMLDAIQTLVTQVDNGKGAV HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHH FARRLGLSKTTVHHWLKEGGAPALTAHLRIASQTGLPLQRLLTGNLDDWTPSTAEIHQLA HHHHHCCCHHHHHHHHHHCCCCEEEHHEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHH MLFPAETKRATARSIDWEKVRSELHTFSRLPSIISVAEAARRLDVDTRLLYQNANKEARV HHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHH LAERWRQYMQRRKEQSLVNARTVIEAACRDIIADGKAINLRELNARVPKEVLGSIRGVID HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHCCCHHHHHHHHHHHH VLQEVKEALGVS HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA