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The map label for this gene is yjgF [C]

Identifier: 238024855

GI number: 238024855

Start: 1896375

End: 1896773

Strand: Reverse

Name: yjgF [C]

Synonym: bglu_2g14950

Alternate gene names: 238024855

Gene position: 1896773-1896375 (Counterclockwise)

Preceding gene: 238024856

Following gene: 238024844

Centisome position: 67.09

GC content: 67.92

Gene sequence:

>399_bases
ATGTCTTTACCCACGCAGTTCTGGATGGTCGAGGGCGCGCCGACGCCGGTCGGCCCGTTCTCTCACGCGACCGAGCGCGA
CGGCTGGATCTTCGTGACCGGCCAGATGCCGACGCAGCCCGACGACGACGGCGCGCCGCTGCCCGACGGCATCGTCGCGC
AGACGCAGCGCGTGATGGACAACCTGATCCTGGTACTGAAGGGCATGGGGCTCGGCCTCGAGCACGTGATGTCGGCGCGC
ATCTTCCTGACCGAGTTCAAGCGCGACTACGCGGCCATGAACGAGACCTACGCGTCGTATTTCCCGCAGGGCCGGCTGCC
GGCCCGTACCTGCGTGGGCGTGACGGGGCTCGCGCGCGACGCGATCGTCGAGATCGATTTCATCGCCAAGCGGCCCTGA

Upstream 100 bases:

>100_bases
AGCGTGCGTGGCACGGCGGTGATGCGCTGCAGCGTTGCCGACGCGCGTTTCGGCCCGCTAGAATCGTGGCTCGCCGCCTT
CATGCACGGGAGCCATGCCG

Downstream 100 bases:

>100_bases
CTCGGTCCCGATCGAATCGGGAACGGAAATCGAAAACGGCGACGCCGGCTGTCTGGCCGGCGGCGCCGTTTCATGTCGGA
TGCTGCCGGCGGCGCATCGC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MSLPTQFWMVEGAPTPVGPFSHATERDGWIFVTGQMPTQPDDDGAPLPDGIVAQTQRVMDNLILVLKGMGLGLEHVMSAR
IFLTEFKRDYAAMNETYASYFPQGRLPARTCVGVTGLARDAIVEIDFIAKRP

Sequences:

>Translated_132_residues
MSLPTQFWMVEGAPTPVGPFSHATERDGWIFVTGQMPTQPDDDGAPLPDGIVAQTQRVMDNLILVLKGMGLGLEHVMSAR
IFLTEFKRDYAAMNETYASYFPQGRLPARTCVGVTGLARDAIVEIDFIAKRP
>Mature_131_residues
SLPTQFWMVEGAPTPVGPFSHATERDGWIFVTGQMPTQPDDDGAPLPDGIVAQTQRVMDNLILVLKGMGLGLEHVMSARI
FLTEFKRDYAAMNETYASYFPQGRLPARTCVGVTGLARDAIVEIDFIAKRP

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87082396, Length=123, Percent_Identity=30.0813008130081, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1787245, Length=127, Percent_Identity=33.8582677165354, Blast_Score=67, Evalue=4e-13,
Organism=Escherichia coli, GI87082213, Length=121, Percent_Identity=28.9256198347107, Blast_Score=66, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI71982068, Length=124, Percent_Identity=32.258064516129, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71982075, Length=124, Percent_Identity=32.258064516129, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI25148896, Length=124, Percent_Identity=32.258064516129, Blast_Score=67, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6322138, Length=117, Percent_Identity=29.9145299145299, Blast_Score=70, Evalue=8e-14,
Organism=Drosophila melanogaster, GI19921376, Length=119, Percent_Identity=36.1344537815126, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14528; Mature: 14397

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPTQFWMVEGAPTPVGPFSHATERDGWIFVTGQMPTQPDDDGAPLPDGIVAQTQRVMD
CCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
NLILVLKGMGLGLEHVMSARIFLTEFKRDYAAMNETYASYFPQGRLPARTCVGVTGLARD
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCC
AIVEIDFIAKRP
CEEEEEEEECCC
>Mature Secondary Structure 
SLPTQFWMVEGAPTPVGPFSHATERDGWIFVTGQMPTQPDDDGAPLPDGIVAQTQRVMD
CCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
NLILVLKGMGLGLEHVMSARIFLTEFKRDYAAMNETYASYFPQGRLPARTCVGVTGLARD
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCC
AIVEIDFIAKRP
CEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]