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The map label for this gene is yncD [H]

Identifier: 238024856

GI number: 238024856

Start: 1896875

End: 1898998

Strand: Reverse

Name: yncD [H]

Synonym: bglu_2g14960

Alternate gene names: 238024856

Gene position: 1898998-1896875 (Counterclockwise)

Preceding gene: 238024857

Following gene: 238024855

Centisome position: 67.17

GC content: 69.49

Gene sequence:

>2124_bases
ATGATCCGCTTTTCCCGACTCGCGGCCGCCTTGTCCGGCGTGCTGTCCGCCGTTGCCGCATCCGGCGCGGCCGCGCAGGC
CGGCGTCGCCGCCGGCGGCGCGGCCGAGCCCGCGTCCGCCACGCCGCTGCCGCCGATCGCCGTCGATGCCCGGCCGATCG
CCTCGCCCACCTCGCTGTCCAGCGCCGCTCTGAAGCGCCGGCTCGACCAGACGGCCGGCTCGGTCGGCTTCGTCGACGCG
TCGAGCTACCTGAACACCTATGCGTTCACGCTGCGCGACGTGCTGCAGAACGCGCCGGGCGTGTTCGTCGAGAACCGCTA
CGGCCAGGAGCTGCGGTTGTCGATCCGCGGTTCGGGCATTGCGCGCGGCTATCACGCGCGCGGCCTCGACATTCTGCAGG
ACGGCATCCCGACCAACCTCGCCGACGGCAGCGGCGACTATTACCAGATCGATCCGCTCGCGCTGCAGGCCACCGAGATC
TACAAGGGCGGTAACGGCCTGCAATACGGTGCGTCCACGCTGGGCGGCGCGATCAACTTCGTGACGCCGACCGCCCATAC
GGCCGAGGCGCCGAACCTCGTGCGCGTGGAGGGCGGCAGCGACGGCACGCTGCGCACCGGCGCGCAGCTCTCGCGCGTGA
TCGGGCCGCTCGATTTCCTTGCCACCTTCAGCGTGAACCATGCGCACGGCTGGCGCGACCACGAGCGCGGCCGGTACCGG
CAGTTCAATGCGAACCTCGGCTACCGCTTCAGCCCGAGCGTGGAGACGCGCTTCTACGTCGGCGCCTACCTGGTCGACCA
GCAACTGCCCGGCTCGCTCTCCTTGTTCGATGCGCTGCATCGTCCCGCCGCCGCGTCCCCGGGGGCGCTGTCGGGCGACC
AGGCGCGCAACTCGCGCACCGAGCGCATCGCGAACCGCACCACGCTCGAGCTGGGCGGCGGCGAACTGCAGTTCGACACC
TGGGCGATCCACAAGAGCCTCTATCACCCGATTTTCCAGGTCATCGACCAGGACGGCTGGACCTACGGCTTCGCGCCGCG
CTTCACCGCGCATCCGGTAGCGGCCGGCATGCGCGATGACCTGATGGTCGGCGCGCGCTTCTTCGGCGGGCGCACCGGGG
CCAGCCAGTTCGTCAACGTACACGGCGAACGCGGCGCGCAGACGCTCGACGCGCGGCAGAGCGCGTTCAACTACGAGGCC
TATCTCGAGAACCGGCTGTTCTTCCTGCCCACCGTCGCGCTGATGACGGGCGTGAAGGTGCTGCACTCGGTGCGCGAATA
CATCGACTACGGCGGCCTGCCGGGCGATGCCGCCTACCGCTCCACGCGCGCCTCGTACAGCGGCCTGAACCCGAAGCTCG
GCCTGCTCTGGCGGCCCGCGCGCGAGATCCAGGCATTCGCCGACATCACGCGCAGCCAGGACGTGCCCGACTTCACGGAC
CTCTCGCAGACCTTTGCCGCCACCACGCGCTTTACGCCGCTCGCGGCGCAGCACGCCTGGACCCTCGAGCTCGGCACGCG
CGGCACGCGCGATCGCCTCAGCTGGGACCTGACAGCCTACCGTTCGCTGGTGCGCGACCAGTTGCTCCAATACACGACCG
ATCCGGCCATCCCGGCCGCGACCTTCAACGCCAACAAGACGGTGCTGCAAGGCATCGAGGCCGGCGCGTCGATCGAGCTC
TGGCGCGACCTCACGCGCCGCGGCGCAGGCGATCGCATCACGCTGTCGGGCCTCTGGAACGTCAGCGATTTCCGCTTCCA
GGACGATCCGCAATACGGCTCGAAGCGCATCGCCGGCGTGCCGCTCCACGTGCTGCGCGGCGTGCTCGGCTATGCGCGGC
CCAACGGCTTTCACGTCTCGGCCAGCCTCGACTGGGTGCCCTCGGGTGCCTGGGCCGACGACGCGAATACGCTGCGCGTG
CCCGGCTACACGGTGTTCGGCATGCAGGCGGGGATGGATTTTCGCAACGGTCTGTCGATTTATATCGATCTGCGCAATCT
CGCGAACAAGCGCTACGTGTCGGACATCAGCACGGTGGCGAACGCGCGGACCGCGTCGAGCACCGCGATCTTCTATCCGG
GGGCCGGGCGCAGCCTGTTCGCGGGAATGCGCTGCGCGTTCTGA

Upstream 100 bases:

>100_bases
GGTGCTGCGCAAGCCGATTGGCAGTCCTAGCGAGCAGCACCGGCGAGCCGCCGCGCTGGCGGCCCGGCCACGAACCGATT
CCGATCACTACCCTAACCAC

Downstream 100 bases:

>100_bases
GAGCGTGCGTGGCACGGCGGTGATGCGCTGCAGCGTTGCCGACGCGCGTTTCGGCCCGCTAGAATCGTGGCTCGCCGCCT
TCATGCACGGGAGCCATGCC

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 707; Mature: 707

Protein sequence:

>707_residues
MIRFSRLAAALSGVLSAVAASGAAAQAGVAAGGAAEPASATPLPPIAVDARPIASPTSLSSAALKRRLDQTAGSVGFVDA
SSYLNTYAFTLRDVLQNAPGVFVENRYGQELRLSIRGSGIARGYHARGLDILQDGIPTNLADGSGDYYQIDPLALQATEI
YKGGNGLQYGASTLGGAINFVTPTAHTAEAPNLVRVEGGSDGTLRTGAQLSRVIGPLDFLATFSVNHAHGWRDHERGRYR
QFNANLGYRFSPSVETRFYVGAYLVDQQLPGSLSLFDALHRPAAASPGALSGDQARNSRTERIANRTTLELGGGELQFDT
WAIHKSLYHPIFQVIDQDGWTYGFAPRFTAHPVAAGMRDDLMVGARFFGGRTGASQFVNVHGERGAQTLDARQSAFNYEA
YLENRLFFLPTVALMTGVKVLHSVREYIDYGGLPGDAAYRSTRASYSGLNPKLGLLWRPAREIQAFADITRSQDVPDFTD
LSQTFAATTRFTPLAAQHAWTLELGTRGTRDRLSWDLTAYRSLVRDQLLQYTTDPAIPAATFNANKTVLQGIEAGASIEL
WRDLTRRGAGDRITLSGLWNVSDFRFQDDPQYGSKRIAGVPLHVLRGVLGYARPNGFHVSASLDWVPSGAWADDANTLRV
PGYTVFGMQAGMDFRNGLSIYIDLRNLANKRYVSDISTVANARTASSTAIFYPGAGRSLFAGMRCAF

Sequences:

>Translated_707_residues
MIRFSRLAAALSGVLSAVAASGAAAQAGVAAGGAAEPASATPLPPIAVDARPIASPTSLSSAALKRRLDQTAGSVGFVDA
SSYLNTYAFTLRDVLQNAPGVFVENRYGQELRLSIRGSGIARGYHARGLDILQDGIPTNLADGSGDYYQIDPLALQATEI
YKGGNGLQYGASTLGGAINFVTPTAHTAEAPNLVRVEGGSDGTLRTGAQLSRVIGPLDFLATFSVNHAHGWRDHERGRYR
QFNANLGYRFSPSVETRFYVGAYLVDQQLPGSLSLFDALHRPAAASPGALSGDQARNSRTERIANRTTLELGGGELQFDT
WAIHKSLYHPIFQVIDQDGWTYGFAPRFTAHPVAAGMRDDLMVGARFFGGRTGASQFVNVHGERGAQTLDARQSAFNYEA
YLENRLFFLPTVALMTGVKVLHSVREYIDYGGLPGDAAYRSTRASYSGLNPKLGLLWRPAREIQAFADITRSQDVPDFTD
LSQTFAATTRFTPLAAQHAWTLELGTRGTRDRLSWDLTAYRSLVRDQLLQYTTDPAIPAATFNANKTVLQGIEAGASIEL
WRDLTRRGAGDRITLSGLWNVSDFRFQDDPQYGSKRIAGVPLHVLRGVLGYARPNGFHVSASLDWVPSGAWADDANTLRV
PGYTVFGMQAGMDFRNGLSIYIDLRNLANKRYVSDISTVANARTASSTAIFYPGAGRSLFAGMRCAF
>Mature_707_residues
MIRFSRLAAALSGVLSAVAASGAAAQAGVAAGGAAEPASATPLPPIAVDARPIASPTSLSSAALKRRLDQTAGSVGFVDA
SSYLNTYAFTLRDVLQNAPGVFVENRYGQELRLSIRGSGIARGYHARGLDILQDGIPTNLADGSGDYYQIDPLALQATEI
YKGGNGLQYGASTLGGAINFVTPTAHTAEAPNLVRVEGGSDGTLRTGAQLSRVIGPLDFLATFSVNHAHGWRDHERGRYR
QFNANLGYRFSPSVETRFYVGAYLVDQQLPGSLSLFDALHRPAAASPGALSGDQARNSRTERIANRTTLELGGGELQFDT
WAIHKSLYHPIFQVIDQDGWTYGFAPRFTAHPVAAGMRDDLMVGARFFGGRTGASQFVNVHGERGAQTLDARQSAFNYEA
YLENRLFFLPTVALMTGVKVLHSVREYIDYGGLPGDAAYRSTRASYSGLNPKLGLLWRPAREIQAFADITRSQDVPDFTD
LSQTFAATTRFTPLAAQHAWTLELGTRGTRDRLSWDLTAYRSLVRDQLLQYTTDPAIPAATFNANKTVLQGIEAGASIEL
WRDLTRRGAGDRITLSGLWNVSDFRFQDDPQYGSKRIAGVPLHVLRGVLGYARPNGFHVSASLDWVPSGAWADDANTLRV
PGYTVFGMQAGMDFRNGLSIYIDLRNLANKRYVSDISTVANARTASSTAIFYPGAGRSLFAGMRCAF

Specific function: Probable receptor, tonB-dependent [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=692, Percent_Identity=23.8439306358382, Blast_Score=106, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 76362; Mature: 76362

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRFSRLAAALSGVLSAVAASGAAAQAGVAAGGAAEPASATPLPPIAVDARPIASPTSLS
CCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHH
SAALKRRLDQTAGSVGFVDASSYLNTYAFTLRDVLQNAPGVFVENRYGQELRLSIRGSGI
HHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCE
ARGYHARGLDILQDGIPTNLADGSGDYYQIDPLALQATEIYKGGNGLQYGASTLGGAINF
ECCCCCCCHHHHHCCCCCCCCCCCCCEEEECCEEEEEEHHEECCCCCCCCHHHHCCEEEE
VTPTAHTAEAPNLVRVEGGSDGTLRTGAQLSRVIGPLDFLATFSVNHAHGWRDHERGRYR
ECCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEE
QFNANLGYRFSPSVETRFYVGAYLVDQQLPGSLSLFDALHRPAAASPGALSGDQARNSRT
EECCCCCEEECCCCCCEEEEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHH
ERIANRTTLELGGGELQFDTWAIHKSLYHPIFQVIDQDGWTYGFAPRFTAHPVAAGMRDD
HHHHCCCEEEECCCEEEEHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCHHCCCCHH
LMVGARFFGGRTGASQFVNVHGERGAQTLDARQSAFNYEAYLENRLFFLPTVALMTGVKV
HHHHHHHHCCCCCCCHHEECCCCCCCHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHH
LHSVREYIDYGGLPGDAAYRSTRASYSGLNPKLGLLWRPAREIQAFADITRSQDVPDFTD
HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCHHH
LSQTFAATTRFTPLAAQHAWTLELGTRGTRDRLSWDLTAYRSLVRDQLLQYTTDPAIPAA
HHHHHHHHHCCCCHHHCCEEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCE
TFNANKTVLQGIEAGASIELWRDLTRRGAGDRITLSGLWNVSDFRFQDDPQYGSKRIAGV
EECCCHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
PLHVLRGVLGYARPNGFHVSASLDWVPSGAWADDANTLRVPGYTVFGMQAGMDFRNGLSI
CHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCEEECCCEEEEEEECCCCCCCCCEE
YIDLRNLANKRYVSDISTVANARTASSTAIFYPGAGRSLFAGMRCAF
EEEHHHHCCHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHCCHHCCC
>Mature Secondary Structure
MIRFSRLAAALSGVLSAVAASGAAAQAGVAAGGAAEPASATPLPPIAVDARPIASPTSLS
CCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHH
SAALKRRLDQTAGSVGFVDASSYLNTYAFTLRDVLQNAPGVFVENRYGQELRLSIRGSGI
HHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCE
ARGYHARGLDILQDGIPTNLADGSGDYYQIDPLALQATEIYKGGNGLQYGASTLGGAINF
ECCCCCCCHHHHHCCCCCCCCCCCCCEEEECCEEEEEEHHEECCCCCCCCHHHHCCEEEE
VTPTAHTAEAPNLVRVEGGSDGTLRTGAQLSRVIGPLDFLATFSVNHAHGWRDHERGRYR
ECCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEE
QFNANLGYRFSPSVETRFYVGAYLVDQQLPGSLSLFDALHRPAAASPGALSGDQARNSRT
EECCCCCEEECCCCCCEEEEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHH
ERIANRTTLELGGGELQFDTWAIHKSLYHPIFQVIDQDGWTYGFAPRFTAHPVAAGMRDD
HHHHCCCEEEECCCEEEEHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCHHCCCCHH
LMVGARFFGGRTGASQFVNVHGERGAQTLDARQSAFNYEAYLENRLFFLPTVALMTGVKV
HHHHHHHHCCCCCCCHHEECCCCCCCHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHH
LHSVREYIDYGGLPGDAAYRSTRASYSGLNPKLGLLWRPAREIQAFADITRSQDVPDFTD
HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCHHH
LSQTFAATTRFTPLAAQHAWTLELGTRGTRDRLSWDLTAYRSLVRDQLLQYTTDPAIPAA
HHHHHHHHHCCCCHHHCCEEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCE
TFNANKTVLQGIEAGASIELWRDLTRRGAGDRITLSGLWNVSDFRFQDDPQYGSKRIAGV
EECCCHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
PLHVLRGVLGYARPNGFHVSASLDWVPSGAWADDANTLRVPGYTVFGMQAGMDFRNGLSI
CHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCEEECCCEEEEEEECCCCCCCCCEE
YIDLRNLANKRYVSDISTVANARTASSTAIFYPGAGRSLFAGMRCAF
EEEHHHHCCHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]