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The map label for this gene is cydA [H]

Identifier: 238024652

GI number: 238024652

Start: 1633071

End: 1634468

Strand: Reverse

Name: cydA [H]

Synonym: bglu_2g12670

Alternate gene names: 238024652

Gene position: 1634468-1633071 (Counterclockwise)

Preceding gene: 238024654

Following gene: 238024651

Centisome position: 57.81

GC content: 66.67

Gene sequence:

>1398_bases
ATGGAAATCTTCGACGCATTGCATCTGGCGCGCCTGCAGTTCGCGTTCACGGTGTCGTTTCACATCGTGTTCCCCGCGAT
CAGCATCGGCATGGCCAGTTTTCTGGCGGTGCTCGAGGGCATGTGGCTGAGGACGGGCGATGCGTCGTACAAGGACATGT
TCCTGTTCTGGTCGAAGATCTTCGCGGTCGGCTTCGGCATGGGGGTGATCTCGGGCGTGGTGATGGCCTACGAGATCGGC
ACCAACTGGGGCGGCTTCTCGCGCATCGCGGGCAGCGTCACCGGCCCGCTGCTGACCTACGAAGTGCTGACGGCCTTCTT
TCTGGAGGCCGGCTTTCTCGGCGTGATGCTGTTCGGCTGGCAGCGCGTGAGCGCGCGCGCGCATTATTTCGCCACGCTGA
TGGTGGCGCTCGGCACGCTGATCTCGACCTTCTGGATCCTCGCCTCGAACAGCTTCATGCAGACGCCGCAGGGCTTCGGC
ATCGAGGACGGCCGGATCGTGCCGGTGGACTGGTGGAAGATCGTTTTCAACCCGTCGTTTCCGTATCGGCTGCTGCACAT
GACCACGGCCGCGTTCATCGTCGCGGGCTTCCTCGTGGCGGCCTGCGGCGCATGGCACCTGCTGAAGGGGCGGCGCGATG
CGGCCGTCAAGCGCAGCTTCTCGATGGCGCTGTGGCTGCTGCTGCCGCTGGTGCCGATCCAGATCGCGATCGGCGACGCG
CACGGCCTGAACACGCGCGAATACCAGCCGGCCAAGATCGCGGCGATCGAGGGCGTGTGGGAAACCGAGCCGGGCGGCAC
CGCGCTGAACCTGGTCGGGCTGCCCGACATGCAGGCCGAGCTCACGCGCTACGCGATCCGCGTGCCGCATCTGGGCAGCC
TGATCCTCACCCACAGCTGGAACGGCGAGATCCGCGGCCTGAAGACCTTCCCGCCCGAGGACAGGCCCTACTCGCCGATC
CTGTTCTGGACCTTCCGCGTGATGGCGGGGCTCGGCTTCCTGATGCTGTTCGCGGTGCTGCTCGGCTGGTGGCTGCGGCG
CGGCGGCCGGCTCTACGAGTCGCGCGTGTTCCAGCGCTTCATGCTGTGGATGGGGCCGTCGGGCATCGTGGCGCTGCTGG
CCGGCTGGATCACCACCGAGGTGGGGCGCCAGCCGTGGACCGTCTACGGCGTGCTGCGCACCGAGCAGTCGGTATCGCCG
CTCACCGGCCAGCAGGTCGGCGTCACGCTGCTGCTGTTCGTGATCGTCTACTTTCTCGTCTTCGGCACCGGCGTCTACTA
CATGCTGAAGCTGATGAAAAAAGGCCCCTCGGCCGGCCACGACGCGTCGCAGGCCGCCCATCCCGCGCTGCATGCCCGGG
CGCTGTCGCGCCCGCTCGATTCGATCGACGGAGAGTGA

Upstream 100 bases:

>100_bases
GTCCAGGCGTGCCGGCGTGATCGCCGCGGCAGCCGCTGGCGGGCCGGATCGATGCGTGGGCAACGATCGCCGCCGCGCGC
GAATCCCCGATGGAGGCGGT

Downstream 100 bases:

>100_bases
CACGATGGTTCTCGACCTTGCCGTGCTGTGGGCGCTGATCGTCGGGCTCGGCGTATTCCTCTACGTGATGCTCGACGGCT
TCGATCTCGGCATCGGCCTG

Product: cytochrome bd ubiquinol oxidase subunit I

Products: Ubiquinone-8; H2O. [C]

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MEIFDALHLARLQFAFTVSFHIVFPAISIGMASFLAVLEGMWLRTGDASYKDMFLFWSKIFAVGFGMGVISGVVMAYEIG
TNWGGFSRIAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGWQRVSARAHYFATLMVALGTLISTFWILASNSFMQTPQGFG
IEDGRIVPVDWWKIVFNPSFPYRLLHMTTAAFIVAGFLVAACGAWHLLKGRRDAAVKRSFSMALWLLLPLVPIQIAIGDA
HGLNTREYQPAKIAAIEGVWETEPGGTALNLVGLPDMQAELTRYAIRVPHLGSLILTHSWNGEIRGLKTFPPEDRPYSPI
LFWTFRVMAGLGFLMLFAVLLGWWLRRGGRLYESRVFQRFMLWMGPSGIVALLAGWITTEVGRQPWTVYGVLRTEQSVSP
LTGQQVGVTLLLFVIVYFLVFGTGVYYMLKLMKKGPSAGHDASQAAHPALHARALSRPLDSIDGE

Sequences:

>Translated_465_residues
MEIFDALHLARLQFAFTVSFHIVFPAISIGMASFLAVLEGMWLRTGDASYKDMFLFWSKIFAVGFGMGVISGVVMAYEIG
TNWGGFSRIAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGWQRVSARAHYFATLMVALGTLISTFWILASNSFMQTPQGFG
IEDGRIVPVDWWKIVFNPSFPYRLLHMTTAAFIVAGFLVAACGAWHLLKGRRDAAVKRSFSMALWLLLPLVPIQIAIGDA
HGLNTREYQPAKIAAIEGVWETEPGGTALNLVGLPDMQAELTRYAIRVPHLGSLILTHSWNGEIRGLKTFPPEDRPYSPI
LFWTFRVMAGLGFLMLFAVLLGWWLRRGGRLYESRVFQRFMLWMGPSGIVALLAGWITTEVGRQPWTVYGVLRTEQSVSP
LTGQQVGVTLLLFVIVYFLVFGTGVYYMLKLMKKGPSAGHDASQAAHPALHARALSRPLDSIDGE
>Mature_465_residues
MEIFDALHLARLQFAFTVSFHIVFPAISIGMASFLAVLEGMWLRTGDASYKDMFLFWSKIFAVGFGMGVISGVVMAYEIG
TNWGGFSRIAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGWQRVSARAHYFATLMVALGTLISTFWILASNSFMQTPQGFG
IEDGRIVPVDWWKIVFNPSFPYRLLHMTTAAFIVAGFLVAACGAWHLLKGRRDAAVKRSFSMALWLLLPLVPIQIAIGDA
HGLNTREYQPAKIAAIEGVWETEPGGTALNLVGLPDMQAELTRYAIRVPHLGSLILTHSWNGEIRGLKTFPPEDRPYSPI
LFWTFRVMAGLGFLMLFAVLLGWWLRRGGRLYESRVFQRFMLWMGPSGIVALLAGWITTEVGRQPWTVYGVLRTEQSVSP
LTGQQVGVTLLLFVIVYFLVFGTGVYYMLKLMKKGPSAGHDASQAAHPALHARALSRPLDSIDGE

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=503, Percent_Identity=31.2127236580517, Blast_Score=256, Evalue=3e-69,
Organism=Escherichia coli, GI1787212, Length=316, Percent_Identity=34.4936708860759, Blast_Score=220, Evalue=1e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.- [C]

Molecular weight: Translated: 51549; Mature: 51549

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIFDALHLARLQFAFTVSFHIVFPAISIGMASFLAVLEGMWLRTGDASYKDMFLFWSKI
CCHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHH
FAVGFGMGVISGVVMAYEIGTNWGGFSRIAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGW
HHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
QRVSARAHYFATLMVALGTLISTFWILASNSFMQTPQGFGIEDGRIVPVDWWKIVFNPSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCEEEEEEEEEEEECCCC
PYRLLHMTTAAFIVAGFLVAACGAWHLLKGRRDAAVKRSFSMALWLLLPLVPIQIAIGDA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCC
HGLNTREYQPAKIAAIEGVWETEPGGTALNLVGLPDMQAELTRYAIRVPHLGSLILTHSW
CCCCCCCCCCCEEEEECCCEECCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEEEECC
NGEIRGLKTFPPEDRPYSPILFWTFRVMAGLGFLMLFAVLLGWWLRRGGRLYESRVFQRF
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
MLWMGPSGIVALLAGWITTEVGRQPWTVYGVLRTEQSVSPLTGQQVGVTLLLFVIVYFLV
HHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
FGTGVYYMLKLMKKGPSAGHDASQAAHPALHARALSRPLDSIDGE
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCC
>Mature Secondary Structure
MEIFDALHLARLQFAFTVSFHIVFPAISIGMASFLAVLEGMWLRTGDASYKDMFLFWSKI
CCHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHH
FAVGFGMGVISGVVMAYEIGTNWGGFSRIAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGW
HHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
QRVSARAHYFATLMVALGTLISTFWILASNSFMQTPQGFGIEDGRIVPVDWWKIVFNPSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCEEEEEEEEEEEECCCC
PYRLLHMTTAAFIVAGFLVAACGAWHLLKGRRDAAVKRSFSMALWLLLPLVPIQIAIGDA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCC
HGLNTREYQPAKIAAIEGVWETEPGGTALNLVGLPDMQAELTRYAIRVPHLGSLILTHSW
CCCCCCCCCCCEEEEECCCEECCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEEEECC
NGEIRGLKTFPPEDRPYSPILFWTFRVMAGLGFLMLFAVLLGWWLRRGGRLYESRVFQRF
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
MLWMGPSGIVALLAGWITTEVGRQPWTVYGVLRTEQSVSPLTGQQVGVTLLLFVIVYFLV
HHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
FGTGVYYMLKLMKKGPSAGHDASQAAHPALHARALSRPLDSIDGE
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O. [C]

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]