Click here to switch to the map view.

The map label for this gene is cydB [H]

Identifier: 238024651

GI number: 238024651

Start: 1632059

End: 1633066

Strand: Reverse

Name: cydB [H]

Synonym: bglu_2g12660

Alternate gene names: 238024651

Gene position: 1633066-1632059 (Counterclockwise)

Preceding gene: 238024652

Following gene: 238024650

Centisome position: 57.76

GC content: 67.16

Gene sequence:

>1008_bases
ATGGTTCTCGACCTTGCCGTGCTGTGGGCGCTGATCGTCGGGCTCGGCGTATTCCTCTACGTGATGCTCGACGGCTTCGA
TCTCGGCATCGGCCTGCTGTTTCCGTTCTTCGACGCCGAGCGCGAGCGCCAGGTGATGCTCAACACGGTCGCGCCGGTGT
GGGACGGCAACGAGACGTTCCTGGTGCTGGGCGGCGCGGTGCTGTACGGCGCGTTCCCGGTGGCCTACGCCACGCTGCTG
CCGGCCAACTACCTGCCGCTGATCCTGATGGTGATCGGGCTGATTTTCCGCGGCGCCGCGTTCGAGCTGCGTGCCAAGGC
GGTGCGCACGCAGAACCTGTGGGATCTCGCGTTCATCGGCGGCTCGACGCTCGCCACCTTCTGCCAGGGCGTCGTGCTCG
GCTCGCTGCTGCAGGGCACGAGGATCGTCGACGGCAGCTTCGCCGGCGATCCGTTCGGCTGGCTCTCGCCGTTCAGCGTG
TTCTGCGGCTTCTGCCTGCTGATCACCTACGCCACGCTCGGCTGCGGCTGGATCATCTGGAAGACCGACGGCGCGCTGCA
GGCGAAGGCCTATTTCCTGATGAAGCCGCTCTGTTTGCTGCTGCTCGGCGCGATCTTCCTGGTCAGCGCCTGGACCGTGA
TCGGGCTGCCGGCCGTGGCCGACCGCTGGTTCGGCGGCGGCCGCCTGCTGATGTTCTCGCCGGTGCCGATCCTGGTGCTC
GCCTGTGCGGCGGGCATCGTGCGCGCGGTGCACCGGCGCCGCGACACGCATCCGTTCGTGCTCACGCTGGCGATCCTGTT
CCTCGGCTACACGGGCCTCGTGATCAGCATCTGGCCGAATCTCGTGCCGCCTTCGCTGAGCATCTGGCAGGCGTCCTCGC
CGGCCAAGAGCCAGTGGTTCATCCTGGTCGGCACGGTGATCGTGCTGCCGGTCATCCTCGTCTACAACTTCATGCAGTAC
CGCGTGTTCCGCGGCAAGGTGCGCGAGGGCGACGCCGGCTATCACTGA

Upstream 100 bases:

>100_bases
GGCCCCTCGGCCGGCCACGACGCGTCGCAGGCCGCCCATCCCGCGCTGCATGCCCGGGCGCTGTCGCGCCCGCTCGATTC
GATCGACGGAGAGTGACACG

Downstream 100 bases:

>100_bases
GCGGCGGCGCGCCCGTGCGCTCACGCAAGCGGCCCGCCGCCGCGGCGAGGCTGCCTGCCGGCGCCGGATTTGCCGCCGCG
CGAACGTGCAGGCTCGTGCA

Product: cytochrome bd-type quinol oxidase subunit 2

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MVLDLAVLWALIVGLGVFLYVMLDGFDLGIGLLFPFFDAERERQVMLNTVAPVWDGNETFLVLGGAVLYGAFPVAYATLL
PANYLPLILMVIGLIFRGAAFELRAKAVRTQNLWDLAFIGGSTLATFCQGVVLGSLLQGTRIVDGSFAGDPFGWLSPFSV
FCGFCLLITYATLGCGWIIWKTDGALQAKAYFLMKPLCLLLLGAIFLVSAWTVIGLPAVADRWFGGGRLLMFSPVPILVL
ACAAGIVRAVHRRRDTHPFVLTLAILFLGYTGLVISIWPNLVPPSLSIWQASSPAKSQWFILVGTVIVLPVILVYNFMQY
RVFRGKVREGDAGYH

Sequences:

>Translated_335_residues
MVLDLAVLWALIVGLGVFLYVMLDGFDLGIGLLFPFFDAERERQVMLNTVAPVWDGNETFLVLGGAVLYGAFPVAYATLL
PANYLPLILMVIGLIFRGAAFELRAKAVRTQNLWDLAFIGGSTLATFCQGVVLGSLLQGTRIVDGSFAGDPFGWLSPFSV
FCGFCLLITYATLGCGWIIWKTDGALQAKAYFLMKPLCLLLLGAIFLVSAWTVIGLPAVADRWFGGGRLLMFSPVPILVL
ACAAGIVRAVHRRRDTHPFVLTLAILFLGYTGLVISIWPNLVPPSLSIWQASSPAKSQWFILVGTVIVLPVILVYNFMQY
RVFRGKVREGDAGYH
>Mature_335_residues
MVLDLAVLWALIVGLGVFLYVMLDGFDLGIGLLFPFFDAERERQVMLNTVAPVWDGNETFLVLGGAVLYGAFPVAYATLL
PANYLPLILMVIGLIFRGAAFELRAKAVRTQNLWDLAFIGGSTLATFCQGVVLGSLLQGTRIVDGSFAGDPFGWLSPFSV
FCGFCLLITYATLGCGWIIWKTDGALQAKAYFLMKPLCLLLLGAIFLVSAWTVIGLPAVADRWFGGGRLLMFSPVPILVL
ACAAGIVRAVHRRRDTHPFVLTLAILFLGYTGLVISIWPNLVPPSLSIWQASSPAKSQWFILVGTVIVLPVILVYNFMQY
RVFRGKVREGDAGYH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=364, Percent_Identity=27.7472527472527, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787213, Length=359, Percent_Identity=27.8551532033426, Blast_Score=118, Evalue=6e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36603; Mature: 36603

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLDLAVLWALIVGLGVFLYVMLDGFDLGIGLLFPFFDAERERQVMLNTVAPVWDGNETF
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEE
LVLGGAVLYGAFPVAYATLLPANYLPLILMVIGLIFRGAAFELRAKAVRTQNLWDLAFIG
EEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEC
GSTLATFCQGVVLGSLLQGTRIVDGSFAGDPFGWLSPFSVFCGFCLLITYATLGCGWIIW
CHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE
KTDGALQAKAYFLMKPLCLLLLGAIFLVSAWTVIGLPAVADRWFGGGRLLMFSPVPILVL
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEECCHHHHHH
ACAAGIVRAVHRRRDTHPFVLTLAILFLGYTGLVISIWPNLVPPSLSIWQASSPAKSQWF
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCHH
ILVGTVIVLPVILVYNFMQYRVFRGKVREGDAGYH
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MVLDLAVLWALIVGLGVFLYVMLDGFDLGIGLLFPFFDAERERQVMLNTVAPVWDGNETF
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEE
LVLGGAVLYGAFPVAYATLLPANYLPLILMVIGLIFRGAAFELRAKAVRTQNLWDLAFIG
EEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEC
GSTLATFCQGVVLGSLLQGTRIVDGSFAGDPFGWLSPFSVFCGFCLLITYATLGCGWIIW
CHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE
KTDGALQAKAYFLMKPLCLLLLGAIFLVSAWTVIGLPAVADRWFGGGRLLMFSPVPILVL
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEECCHHHHHH
ACAAGIVRAVHRRRDTHPFVLTLAILFLGYTGLVISIWPNLVPPSLSIWQASSPAKSQWF
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCHH
ILVGTVIVLPVILVYNFMQYRVFRGKVREGDAGYH
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]