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The map label for this gene is yafC [H]

Identifier: 238024618

GI number: 238024618

Start: 1571311

End: 1572267

Strand: Reverse

Name: yafC [H]

Synonym: bglu_2g12330

Alternate gene names: 238024618

Gene position: 1572267-1571311 (Counterclockwise)

Preceding gene: 238024624

Following gene: 238024616

Centisome position: 55.61

GC content: 69.7

Gene sequence:

>957_bases
ATGGACATGCTCGAAAACATGCGGCTGTTCGTGCGCGTCGTCGAGGCCGGCAGCTTCACCGCCGTTGCCAAGGAAATCGC
CGCCACGACCGCGCAGGTGTCGCGTGCCGTCTCGAATCTCGAGGCCCACGTGCAGACGCGCCTGCTGCACCGCACCACCC
GCCACCTCGGCCTGACGGAAAGCGGGCAGCGCTATTTCGAACGATCGAAGTCGATCCTGGCCGAGATCGACCACGCCAAC
GCCGAGGCGCGCAACGCCCTGCTCAAGCCGAGCGGCCGGATGCGCATCCACGCCATGACGGGGCTCGGGCAGAGCCATGT
GGTGCCGGCCGTGGCGCGCTATCAGGAGGACAACCCCGAGGTGTCGATCGAGCTGACGCTGGCGCAGCGCATGCCGAACC
TGGTGGAGGAGGGCTACGACGTGTCGATCGTCACGGCCTCGCAGCTGCCCGATTCGGGCTACGTCGCGCAGACCTGCGGC
GAGAGCTGCAGCGTGCTGGTGGCCTCGCGCGAGTATCTGGCGCGCCACGGCGTGCCGAAGACGCCCGACGATCTGCCCAG
GCACGTCTGCCTGCGGCTGGACACGCCGTCGTCGCCGGGCGGCGAATGGCGCCTCGAGAGCGACGAAGGCGACGAGTGGC
GCTTCGAGCTGCCGTCCTCGCCGTTCCAGGTCAACGTGCCCGACGCGCTCGCAGTGGCGCTGCGCCTGGGCCGCGGCATC
GGCTCGATCGCGCTCTATACGGCGCTCGACGACCTGCGCTCCGGGCGGCTCGTGCGGGTGCTGCCGAACTACCGGCTGCA
CACGATCCACGTCTATGCCGTGTATGCCACGCGCCGCTATCTCGACGCGAAGACGCGCACCTTCCTCGATCATCTGCGCA
CCACGCTCACCCCGGCGCTCGCCAACGACCTGGTCGAGCTCGAGCGGCTGGCCGGCACCGTGCCGGCCGGCGCCTGA

Upstream 100 bases:

>100_bases
TCCCAGCCCCTTGTCCGGCCGAGCCCGCGCGCGTGCCGCCGGGGCCGCCGGGCCCCGAGGGGCGGCGGCTTCGCCGGCTC
CCCCGTTTCCCTGATTCCCC

Downstream 100 bases:

>100_bases
GCGCCGCGCAGGCCGCGGGGCGGCCGGCGCATCGCCTGCCGGCCCGAGGCGCGGCCGGCACCGGCGTCAGTGCGTGACCG
ACAGGAACAGGTAGGCGGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MDMLENMRLFVRVVEAGSFTAVAKEIAATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGQRYFERSKSILAEIDHAN
AEARNALLKPSGRMRIHAMTGLGQSHVVPAVARYQEDNPEVSIELTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCG
ESCSVLVASREYLARHGVPKTPDDLPRHVCLRLDTPSSPGGEWRLESDEGDEWRFELPSSPFQVNVPDALAVALRLGRGI
GSIALYTALDDLRSGRLVRVLPNYRLHTIHVYAVYATRRYLDAKTRTFLDHLRTTLTPALANDLVELERLAGTVPAGA

Sequences:

>Translated_318_residues
MDMLENMRLFVRVVEAGSFTAVAKEIAATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGQRYFERSKSILAEIDHAN
AEARNALLKPSGRMRIHAMTGLGQSHVVPAVARYQEDNPEVSIELTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCG
ESCSVLVASREYLARHGVPKTPDDLPRHVCLRLDTPSSPGGEWRLESDEGDEWRFELPSSPFQVNVPDALAVALRLGRGI
GSIALYTALDDLRSGRLVRVLPNYRLHTIHVYAVYATRRYLDAKTRTFLDHLRTTLTPALANDLVELERLAGTVPAGA
>Mature_318_residues
MDMLENMRLFVRVVEAGSFTAVAKEIAATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGQRYFERSKSILAEIDHAN
AEARNALLKPSGRMRIHAMTGLGQSHVVPAVARYQEDNPEVSIELTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCG
ESCSVLVASREYLARHGVPKTPDDLPRHVCLRLDTPSSPGGEWRLESDEGDEWRFELPSSPFQVNVPDALAVALRLGRGI
GSIALYTALDDLRSGRLVRVLPNYRLHTIHVYAVYATRRYLDAKTRTFLDHLRTTLTPALANDLVELERLAGTVPAGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=34.3642611683849, Blast_Score=154, Evalue=9e-39,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=30.4794520547945, Blast_Score=148, Evalue=6e-37,
Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=32.5423728813559, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1789440, Length=288, Percent_Identity=30.2083333333333, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI87081978, Length=302, Percent_Identity=29.8013245033113, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=26.7123287671233, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=26.8707482993197, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1790011, Length=314, Percent_Identity=22.6114649681529, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35101; Mature: 35101

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMLENMRLFVRVVEAGSFTAVAKEIAATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTE
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SGQRYFERSKSILAEIDHANAEARNALLKPSGRMRIHAMTGLGQSHVVPAVARYQEDNPE
HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCC
VSIELTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGESCSVLVASREYLARHGVPK
EEEEEEEHHHCCHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCEEEHHHHHHHHHCCCCC
TPDDLPRHVCLRLDTPSSPGGEWRLESDEGDEWRFELPSSPFQVNVPDALAVALRLGRGI
CCCHHHHEEEEEECCCCCCCCCEEEECCCCCCEEEECCCCCEEEECCHHHHHHHHHCCCC
GSIALYTALDDLRSGRLVRVLPNYRLHTIHVYAVYATRRYLDAKTRTFLDHLRTTLTPAL
CHHHHHHHHHHHHCCCEEEECCCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
ANDLVELERLAGTVPAGA
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDMLENMRLFVRVVEAGSFTAVAKEIAATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTE
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SGQRYFERSKSILAEIDHANAEARNALLKPSGRMRIHAMTGLGQSHVVPAVARYQEDNPE
HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCC
VSIELTLAQRMPNLVEEGYDVSIVTASQLPDSGYVAQTCGESCSVLVASREYLARHGVPK
EEEEEEEHHHCCHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCEEEHHHHHHHHHCCCCC
TPDDLPRHVCLRLDTPSSPGGEWRLESDEGDEWRFELPSSPFQVNVPDALAVALRLGRGI
CCCHHHHEEEEEECCCCCCCCCEEEECCCCCCEEEECCCCCEEEECCHHHHHHHHHCCCC
GSIALYTALDDLRSGRLVRVLPNYRLHTIHVYAVYATRRYLDAKTRTFLDHLRTTLTPAL
CHHHHHHHHHHHHCCCEEEECCCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
ANDLVELERLAGTVPAGA
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]