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The map label for this gene is fecI [H]

Identifier: 238024612

GI number: 238024612

Start: 1565550

End: 1566059

Strand: Reverse

Name: fecI [H]

Synonym: bglu_2g12270

Alternate gene names: 238024612

Gene position: 1566059-1565550 (Counterclockwise)

Preceding gene: 238024616

Following gene: 238024611

Centisome position: 55.39

GC content: 71.96

Gene sequence:

>510_bases
ATGTCGGCCAACACACTGCTTCAACATCGCGAAATCGATGCACTCTACAGCGGCCACCATGCCTGGCTGCAGCGCTGGCT
CTGCCGCCGGCTCGGCTGCGCGCATCGCGCGGCCGATCTGGCCCACGACACGTTCATGCGCCTGCTGGCCCGCGAGGAGC
CGATCGGCGCCGACGCGCCGCGCGCGTTCCTGACCACCGTCGCGCAGCGCGTGCTCTACAACCACTGGCGGCGCGAGCGC
GTCGAACAGGCCTATCTCGACGCGCTGGCCGCGCAGCCCGAGCGCCAGGCGCCGTCGCCCGAGGCTCGCGCGCTGCTGCT
CGAGGCGCTGATCGAGATCGACCGGCTGCTCGACGGCCTGCCGGCGGCAGCCAGGCGCGCCTTCCTGCTCGCCCAGCTCG
ACGGGCTCTCGCAGGCCGAGATCGCCGCCGAGCTGGGCGTGTCGCTGTCCACGGTCAAGCGCCATCTGGCGCGCGCCGCC
GCCCAATGCTTCTTCGCGATGGCGTTCTGA

Upstream 100 bases:

>100_bases
GCGGATCACACAGGATGGCATGAAATGTTTTTGTTATTGTATATAATAATCATTCTCATTTAAGTCAAAAAAACCGTCGC
GACGGTCGGGGAAGGGTTCG

Downstream 100 bases:

>100_bases
GCCGATGGCGGCCGAACCGAAACCGGCGATTCCGCCGGCAGTCGCGCAGCGCGCCGTGCAATGGTGGGTCGAAACGCAGG
GCGCCGATGCCGACGCCGCG

Product: RNA polymerase sigma factor FecI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MSANTLLQHREIDALYSGHHAWLQRWLCRRLGCAHRAADLAHDTFMRLLAREEPIGADAPRAFLTTVAQRVLYNHWRRER
VEQAYLDALAAQPERQAPSPEARALLLEALIEIDRLLDGLPAAARRAFLLAQLDGLSQAEIAAELGVSLSTVKRHLARAA
AQCFFAMAF

Sequences:

>Translated_169_residues
MSANTLLQHREIDALYSGHHAWLQRWLCRRLGCAHRAADLAHDTFMRLLAREEPIGADAPRAFLTTVAQRVLYNHWRRER
VEQAYLDALAAQPERQAPSPEARALLLEALIEIDRLLDGLPAAARRAFLLAQLDGLSQAEIAAELGVSLSTVKRHLARAA
AQCFFAMAF
>Mature_168_residues
SANTLLQHREIDALYSGHHAWLQRWLCRRLGCAHRAADLAHDTFMRLLAREEPIGADAPRAFLTTVAQRVLYNHWRRERV
EQAYLDALAAQPERQAPSPEARALLLEALIEIDRLLDGLPAAARRAFLLAQLDGLSQAEIAAELGVSLSTVKRHLARAAA
QCFFAMAF

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=154, Percent_Identity=48.0519480519481, Blast_Score=154, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 18917; Mature: 18786

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSANTLLQHREIDALYSGHHAWLQRWLCRRLGCAHRAADLAHDTFMRLLAREEPIGADAP
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
RAFLTTVAQRVLYNHWRRERVEQAYLDALAAQPERQAPSPEARALLLEALIEIDRLLDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
PAAARRAFLLAQLDGLSQAEIAAELGVSLSTVKRHLARAAAQCFFAMAF
CHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SANTLLQHREIDALYSGHHAWLQRWLCRRLGCAHRAADLAHDTFMRLLAREEPIGADAP
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
RAFLTTVAQRVLYNHWRRERVEQAYLDALAAQPERQAPSPEARALLLEALIEIDRLLDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
PAAARRAFLLAQLDGLSQAEIAAELGVSLSTVKRHLARAAAQCFFAMAF
CHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]