Definition | Exiguobacterium sp. AT1b, complete genome. |
---|---|
Accession | NC_012673 |
Length | 2,999,895 |
Click here to switch to the map view.
The map label for this gene is pbuO [H]
Identifier: 229917686
GI number: 229917686
Start: 1923288
End: 1924577
Strand: Reverse
Name: pbuO [H]
Synonym: EAT1b_1963
Alternate gene names: 229917686
Gene position: 1924577-1923288 (Counterclockwise)
Preceding gene: 229917692
Following gene: 229917684
Centisome position: 64.15
GC content: 51.4
Gene sequence:
>1290_bases ATGAATATTTTTCAATTGAAACAACATGGTACGAATGTTAAACAGGAAGTGACTGCTGGGATCACAACGTTCGTGACAAT GGCGTACATCTCTGTCGTCAACCCAGCGATTCTATCTGACGCAGGGATTCCGTTCGCACAAGCATTCACAGCGACAATCA TTGCCATCCTCATCGGAACAGGCTTGATGGCGTTTTATGCGAACTTACCGATCGCCGTAGCACCCGGGATGGGGCTCAAC GCATTCTTCGCTTACACGCTCGTCGCTCAAGAACAGATTGCCCCGTCCGCCGCGCTCGGTGTCGTCTTCGTCTCGTCCGT CTTCTTCTTGATTTTGTCGCTCTCTCCAATTCGGACGAAGTTAATTCAAGCGATTCCGACTTCGTTGAAGCATGCCATCA CGACCGGAATCGGTCTTTTCATCGCTTCACTCGGATTAAAACTATCAGGTTTGATCGTTGCTGATGAAGCAAACTTGGTG CGTCTCGGTGACGTGTCTTCTCCAGAAGTACTACTTGTACTCGGTGGTTTGATCGTCTCGGCACTCCTCTTCTCACGAAA CGTACCCGGTTCTTTACTCATCGGGATGGTACTCACCGGGATTGCGGCTTACTTCATGGACATCTTACAAATCGACGGTG TCACGGCGATGCCGACGCTTCCCGAGGGACTCATGGTCAACCCTGTGACGGCATTTAGTGATGTCATTCAATACGGTTTG TTCGGTGCTGTCCTCTCGTTCTTCCTCGTCACGCTTTTTGATACGACAGGTACGCTTGTCGGTGTCGGAAAACAGGCCGG TCTCTTAAAAGAAGATGGAACAATTGAGAATGGTCACCGTGCACTCTTTGCCGACTCGCTTGCCACAATGGGTGGATCAC TCGTCGGAACGAGCCCGTCTACGGCATACATCGAGTCTGCTGCCGGTGTCGCGCAAGGTGGACGTACAGGGCTCACAACG GCCGTCGTCGCTGGATTGTTCGGATTGACACTCTTCTTCAGCCCACTTATCGGCGCCATCTCTGGCGTTGCGGCGATTAC GGCTCCTGCACTCATCATCGTCGGGGCACTCATGTTGACGAACGTCCGGTTCATCGACTGGAGCGACTTCAGCGAATACT TCCCAGCGTTCATGACGATTTTGATCATGCCTTTGTCAGGAAGCATCGAACGCGGAATCGCCTTCGGGTTCATCTTGTAC CCGATTTTCAAAGCAATGAACAAAGAGACGGTTCACCCGCTCATCTACTTGTTCGGCGCACTCTTCATCTTGGAAATGTT CTTCCTATAA
Upstream 100 bases:
>100_bases GGAATCGAACATTTTTGTATAGTCATCAAGTTGATAACGTTAATTTAAGCATTTTCCTCAATTAATGTTCGGAAATAGAC CGAAATAAGGAGTTATATCG
Downstream 100 bases:
>100_bases ATTAGACAGAAGATTCTCGTCATGTATCGAGGATTCAGTTTGTTGACAAATAACATGTTCGAACTCGTCCTTCCGGCGCC CGCGCTTTCCTCAGGCAATC
Product: Xanthine/uracil/vitamin C permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 429; Mature: 429
Protein sequence:
>429_residues MNIFQLKQHGTNVKQEVTAGITTFVTMAYISVVNPAILSDAGIPFAQAFTATIIAILIGTGLMAFYANLPIAVAPGMGLN AFFAYTLVAQEQIAPSAALGVVFVSSVFFLILSLSPIRTKLIQAIPTSLKHAITTGIGLFIASLGLKLSGLIVADEANLV RLGDVSSPEVLLVLGGLIVSALLFSRNVPGSLLIGMVLTGIAAYFMDILQIDGVTAMPTLPEGLMVNPVTAFSDVIQYGL FGAVLSFFLVTLFDTTGTLVGVGKQAGLLKEDGTIENGHRALFADSLATMGGSLVGTSPSTAYIESAAGVAQGGRTGLTT AVVAGLFGLTLFFSPLIGAISGVAAITAPALIIVGALMLTNVRFIDWSDFSEYFPAFMTILIMPLSGSIERGIAFGFILY PIFKAMNKETVHPLIYLFGALFILEMFFL
Sequences:
>Translated_429_residues MNIFQLKQHGTNVKQEVTAGITTFVTMAYISVVNPAILSDAGIPFAQAFTATIIAILIGTGLMAFYANLPIAVAPGMGLN AFFAYTLVAQEQIAPSAALGVVFVSSVFFLILSLSPIRTKLIQAIPTSLKHAITTGIGLFIASLGLKLSGLIVADEANLV RLGDVSSPEVLLVLGGLIVSALLFSRNVPGSLLIGMVLTGIAAYFMDILQIDGVTAMPTLPEGLMVNPVTAFSDVIQYGL FGAVLSFFLVTLFDTTGTLVGVGKQAGLLKEDGTIENGHRALFADSLATMGGSLVGTSPSTAYIESAAGVAQGGRTGLTT AVVAGLFGLTLFFSPLIGAISGVAAITAPALIIVGALMLTNVRFIDWSDFSEYFPAFMTILIMPLSGSIERGIAFGFILY PIFKAMNKETVHPLIYLFGALFILEMFFL >Mature_429_residues MNIFQLKQHGTNVKQEVTAGITTFVTMAYISVVNPAILSDAGIPFAQAFTATIIAILIGTGLMAFYANLPIAVAPGMGLN AFFAYTLVAQEQIAPSAALGVVFVSSVFFLILSLSPIRTKLIQAIPTSLKHAITTGIGLFIASLGLKLSGLIVADEANLV RLGDVSSPEVLLVLGGLIVSALLFSRNVPGSLLIGMVLTGIAAYFMDILQIDGVTAMPTLPEGLMVNPVTAFSDVIQYGL FGAVLSFFLVTLFDTTGTLVGVGKQAGLLKEDGTIENGHRALFADSLATMGGSLVGTSPSTAYIESAAGVAQGGRTGLTT AVVAGLFGLTLFFSPLIGAISGVAAITAPALIIVGALMLTNVRFIDWSDFSEYFPAFMTILIMPLSGSIERGIAFGFILY PIFKAMNKETVHPLIYLFGALFILEMFFL
Specific function: Involved in the uptake of the purine bases hypoxanthine and guanine. May work at purine concentrations higher than 100 uM [H]
COG id: COG2252
COG function: function code R; Permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790150, Length=430, Percent_Identity=41.6279069767442, Blast_Score=305, Evalue=5e-84, Organism=Escherichia coli, GI87082309, Length=427, Percent_Identity=42.3887587822014, Blast_Score=304, Evalue=9e-84, Organism=Escherichia coli, GI48994909, Length=413, Percent_Identity=37.772397094431, Blast_Score=227, Evalue=1e-60, Organism=Escherichia coli, GI1790499, Length=412, Percent_Identity=37.621359223301, Blast_Score=225, Evalue=3e-60,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006043 [H]
Pfam domain/function: PF00860 Xan_ur_permease [H]
EC number: NA
Molecular weight: Translated: 44928; Mature: 44928
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIFQLKQHGTNVKQEVTAGITTFVTMAYISVVNPAILSDAGIPFAQAFTATIIAILIGT CCCEECHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHH GLMAFYANLPIAVAPGMGLNAFFAYTLVAQEQIAPSAALGVVFVSSVFFLILSLSPIRTK HHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHH LIQAIPTSLKHAITTGIGLFIASLGLKLSGLIVADEANLVRLGDVSSPEVLLVLGGLIVS HHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEECCCCEEEECCCCCCHHHHHHHHHHHH ALLFSRNVPGSLLIGMVLTGIAAYFMDILQIDGVTAMPTLPEGLMVNPVTAFSDVIQYGL HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCEECCHHHHHHHHHHHH FGAVLSFFLVTLFDTTGTLVGVGKQAGLLKEDGTIENGHRALFADSLATMGGSLVGTSPS HHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCC TAYIESAAGVAQGGRTGLTTAVVAGLFGLTLFFSPLIGAISGVAAITAPALIIVGALMLT HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NVRFIDWSDFSEYFPAFMTILIMPLSGSIERGIAFGFILYPIFKAMNKETVHPLIYLFGA CCEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH LFILEMFFL HHHHHHHHC >Mature Secondary Structure MNIFQLKQHGTNVKQEVTAGITTFVTMAYISVVNPAILSDAGIPFAQAFTATIIAILIGT CCCEECHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHH GLMAFYANLPIAVAPGMGLNAFFAYTLVAQEQIAPSAALGVVFVSSVFFLILSLSPIRTK HHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHH LIQAIPTSLKHAITTGIGLFIASLGLKLSGLIVADEANLVRLGDVSSPEVLLVLGGLIVS HHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEECCCCEEEECCCCCCHHHHHHHHHHHH ALLFSRNVPGSLLIGMVLTGIAAYFMDILQIDGVTAMPTLPEGLMVNPVTAFSDVIQYGL HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCEECCHHHHHHHHHHHH FGAVLSFFLVTLFDTTGTLVGVGKQAGLLKEDGTIENGHRALFADSLATMGGSLVGTSPS HHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCC TAYIESAAGVAQGGRTGLTTAVVAGLFGLTLFFSPLIGAISGVAAITAPALIIVGALMLT HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NVRFIDWSDFSEYFPAFMTILIMPLSGSIERGIAFGFILYPIFKAMNKETVHPLIYLFGA CCEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH LFILEMFFL HHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377; 11591660 [H]