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The map label for this gene is yraN [C]

Identifier: 227080763

GI number: 227080763

Start: 566703

End: 567071

Strand: Reverse

Name: yraN [C]

Synonym: VCM66_0538

Alternate gene names: 227080763

Gene position: 567071-566703 (Counterclockwise)

Preceding gene: 227080764

Following gene: 227080762

Centisome position: 19.6

GC content: 43.09

Gene sequence:

>369_bases
ATGGTGTTCGTTAATTCTAGGCACCAAGGAAATCATTATGAACAAATGGCGGCGGACTATCTTCGCCGCCAAGGCCTTAC
TCTAGTCACACAAAATGTGAACTACCGTTTTGGCGAATTAGACTTAATCATGCGTGATGGAAACACATTAGTGTTTGTCG
AAGTACGCTATCGAAACAACACTCAACATGGTCACGCCGCGGAAACCGTCACAAGAACCAAACGTGCTCGCTTGATCAAA
GCCGCAAATTGTTGGATGCTCGCCAACAAGATGAATAGTCACAGTGCGGATTTTCGTTTTGATGTGATTGCCATTCATCA
ACAAGGGCAACATATTGATTGGTTAAAAAACGCTATTACTGAAGGATAA

Upstream 100 bases:

>100_bases
CAGATGAAAATCGTCGAAGGCTATACGATTGATGGACAAACGGGTGTGCTAAGTATTGATGAACAATGTGTGGTTCAGCG
TGAAATCAGCTGGGCAGAGC

Downstream 100 bases:

>100_bases
ACAATGCTCGATAGCATTAAAGACAGTTTTACCGAAAGCATTCAAATTCAAATCGCCGCAGCGGAGGCGTTACCCGATGC
CATTATGCATGCCGCACAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MVFVNSRHQGNHYEQMAADYLRRQGLTLVTQNVNYRFGELDLIMRDGNTLVFVEVRYRNNTQHGHAAETVTRTKRARLIK
AANCWMLANKMNSHSADFRFDVIAIHQQGQHIDWLKNAITEG

Sequences:

>Translated_122_residues
MVFVNSRHQGNHYEQMAADYLRRQGLTLVTQNVNYRFGELDLIMRDGNTLVFVEVRYRNNTQHGHAAETVTRTKRARLIK
AANCWMLANKMNSHSADFRFDVIAIHQQGQHIDWLKNAITEG
>Mature_122_residues
MVFVNSRHQGNHYEQMAADYLRRQGLTLVTQNVNYRFGELDLIMRDGNTLVFVEVRYRNNTQHGHAAETVTRTKRARLIK
AANCWMLANKMNSHSADFRFDVIAIHQQGQHIDWLKNAITEG

Specific function: Unknown

COG id: COG0792

COG function: function code L; Predicted endonuclease distantly related to archaeal Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0102 family

Homologues:

Organism=Escherichia coli, GI1789538, Length=118, Percent_Identity=38.9830508474576, Blast_Score=98, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1312_VIBC3 (A5F986)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- ProteinModelPortal:   A5F986
- STRING:   A5F986
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A0112
- eggNOG:   COG0792
- HOGENOM:   HBG710155
- OMA:   QWLKNAF
- ProtClustDB:   PRK12497
- BioCyc:   VCHO345073:VC0395_A0112-MONOMER
- HAMAP:   MF_00048
- InterPro:   IPR011856
- InterPro:   IPR011335
- InterPro:   IPR003509
- Gene3D:   G3DSA:3.40.1350.10
- TIGRFAMs:   TIGR00252

Pfam domain/function: PF02021 UPF0102; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 14186; Mature: 14186

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFVNSRHQGNHYEQMAADYLRRQGLTLVTQNVNYRFGELDLIMRDGNTLVFVEVRYRNN
CEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCEEEEEECCCEEEEEEEEECCC
TQHGHAAETVTRTKRARLIKAANCWMLANKMNSHSADFRFDVIAIHQQGQHIDWLKNAIT
CCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEEEEEECCCCCHHHHHHHHC
EG
CC
>Mature Secondary Structure
MVFVNSRHQGNHYEQMAADYLRRQGLTLVTQNVNYRFGELDLIMRDGNTLVFVEVRYRNN
CEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCEEEEEECCCEEEEEEEEECCC
TQHGHAAETVTRTKRARLIKAANCWMLANKMNSHSADFRFDVIAIHQQGQHIDWLKNAIT
CCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEEEEEECCCCCHHHHHHHHC
EG
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA