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The map label for this gene is yraM [C]

Identifier: 227080764

GI number: 227080764

Start: 567058

End: 569019

Strand: Reverse

Name: yraM [C]

Synonym: VCM66_0539

Alternate gene names: 227080764

Gene position: 569019-567058 (Counterclockwise)

Preceding gene: 227080766

Following gene: 227080763

Centisome position: 19.67

GC content: 47.15

Gene sequence:

>1962_bases
TTGTGTGATGTCACCCAGATTACCAATCGGGGTTGGGACAATATAAAGAATTGGAGCACCATTTGGCACGGTTTTATTAT
CTGTCATTTGTTTACCATCACATCAACGATTAATATAGAGACAATTTTACACGGACTAACGAAAGAACTCATGGCTATGA
ACCACCATCAGCGACGCAGTGTACCACGCTTACTCACTCCGATTGCATTATCAATCGTTTTATCGGCCTGTTCGACTCAA
CCTTCGTCACCGGATGTGGTCGATATTACCGCTCAACCACTCTTAACGGCGCAGACGTATTTGATGCGAGCCGATGCCAG
CCAAGGTAATCAGCAAAATGATTGGCTGATCATGGCTCTCAAAGCCGCCATAGAGGAAAACAATCCCGATCAAGCCCAAC
TTCTGATCATGCGCTTGGCGAAACAGCCCTTGACTCCAACTCAGCAGGCGCAGTGGCAACTGCTGCGCGCTCAGTTATTA
GCTAATACCGAACAATATCAAGAAGCTCTAGAGCAACTGAGTTTCCAAGCCAATTGGTCGTTACCTCAAGTTCAATGGCA
GCAATATCACCAGCTTCGTGCGGACATATTCACGGCTCTGGATCGCTCTTTTGACTCCACTCGTGAGTTAGTGGCGCTGT
ACGGCCTTTCATCCAACAAGGACAAAGAAGCATTAGCGGATCAAATCTGGGCAAACCTCAATCACTACTCCGCCAGCAAA
ATTATCAAGCTTTCTACTGAGCCCGATGAAGCGCAGTTGGATGGCTGGCTACAGCTTGCGATCTATATGAAAACGCTGGG
TAGCGATCTACCACAACTGAAAAATACCTTAGAAAAATGGCTGGCTGAAAATCCGCAGCACCCAGCGGCAATTTATACCC
CTAAAGCCATTACCGATATTTTGGCTTTAGAAATCGTCAAGCCGACTAACACCGCTTTACTGTTACCCTTGACTGGTAAA
TTTGCTAAGCAGGCCCAATTTATTCGTGATGGATTTGTGTTTGCCATGATGAACGATGCCGATCGCCAAACAAACGCGAC
GTTGACAATCATCGATACCAATGCCGAAACGCTCGAATCTGTTGATGCGATTCTGACCAGCAAACAAATTGATTTTGTTG
TGGGTCCACTGATCAAAGGTAATATCGAAAAACTGCAGCAATTCCAACAAAGCCGTGGCCAAATGATCCCAACGTTGGCG
CTGAACATCCCGGATCAAATTGATACGACGGCGGGCGCTTGCTATCTCGCTCTATCACCTGAACAAGAAGTCGCACAAGC
GGCGAAACATCTGTTCACTCAAGGCTACCGTTACCCACTGATCCTCGCGCCCCAAAACGCTTATGGTGAACGTGTGGTTG
AAGCCTTTAATGAAGAGTGGCGTCGTTACAGCAAAAACAAAGTGGCAGTGAATCTTTTTGGCGACAAGCGTCAATTACAA
CGCAATATCAACTCCATTTTTGGCTTACAGGATAGCCAACAAAACATCGCGCAGATGGAATCTCTGCTTGGTATGGGCTT
AGAGAGCCAACCTCGTAGCCGCCGTGATATCGATGCTGTGTATATTGTCGCAAACAGCTCAGAACTCACCTTGATCAAGC
CATTTATTGAAGTGGCTATCAACCCTGATACCCGTCCACCAAAACTGTTCTCGAACTCGAACAGCAACACAGGTGGTCGC
CAATACGAAGATTTGTCAGGCGTGACTTACAGTGATATTCCACTGCTGATACAGCCAGCGCCAAGTATCAAAGAGCAGCT
AACCCAAATCTGGCCCGAAAGCTCAAATGCAGAGCGCCGCTTGCAAGCTCTGGGGATGGATGCCTACCGTTTGATGGTGG
AACTTCCACAGATGAAAATCGTCGAAGGCTATACGATTGATGGACAAACGGGTGTGCTAAGTATTGATGAACAATGTGTG
GTTCAGCGTGAAATCAGCTGGGCAGAGCATGGTGTTCGTTAA

Upstream 100 bases:

>100_bases
ACGTTTTGGTCGAGATGTTGAAGTGAGCTAATAATTTTCCGGTATGACGCGTATCTTCAACGGCAATCATATCGACACTG
GCTAATACATCCAGAGCGCG

Downstream 100 bases:

>100_bases
TTCTAGGCACCAAGGAAATCATTATGAACAAATGGCGGCGGACTATCTTCGCCGCCAAGGCCTTACTCTAGTCACACAAA
ATGTGAACTACCGTTTTGGC

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 653; Mature: 653

Protein sequence:

>653_residues
MCDVTQITNRGWDNIKNWSTIWHGFIICHLFTITSTINIETILHGLTKELMAMNHHQRRSVPRLLTPIALSIVLSACSTQ
PSSPDVVDITAQPLLTAQTYLMRADASQGNQQNDWLIMALKAAIEENNPDQAQLLIMRLAKQPLTPTQQAQWQLLRAQLL
ANTEQYQEALEQLSFQANWSLPQVQWQQYHQLRADIFTALDRSFDSTRELVALYGLSSNKDKEALADQIWANLNHYSASK
IIKLSTEPDEAQLDGWLQLAIYMKTLGSDLPQLKNTLEKWLAENPQHPAAIYTPKAITDILALEIVKPTNTALLLPLTGK
FAKQAQFIRDGFVFAMMNDADRQTNATLTIIDTNAETLESVDAILTSKQIDFVVGPLIKGNIEKLQQFQQSRGQMIPTLA
LNIPDQIDTTAGACYLALSPEQEVAQAAKHLFTQGYRYPLILAPQNAYGERVVEAFNEEWRRYSKNKVAVNLFGDKRQLQ
RNINSIFGLQDSQQNIAQMESLLGMGLESQPRSRRDIDAVYIVANSSELTLIKPFIEVAINPDTRPPKLFSNSNSNTGGR
QYEDLSGVTYSDIPLLIQPAPSIKEQLTQIWPESSNAERRLQALGMDAYRLMVELPQMKIVEGYTIDGQTGVLSIDEQCV
VQREISWAEHGVR

Sequences:

>Translated_653_residues
MCDVTQITNRGWDNIKNWSTIWHGFIICHLFTITSTINIETILHGLTKELMAMNHHQRRSVPRLLTPIALSIVLSACSTQ
PSSPDVVDITAQPLLTAQTYLMRADASQGNQQNDWLIMALKAAIEENNPDQAQLLIMRLAKQPLTPTQQAQWQLLRAQLL
ANTEQYQEALEQLSFQANWSLPQVQWQQYHQLRADIFTALDRSFDSTRELVALYGLSSNKDKEALADQIWANLNHYSASK
IIKLSTEPDEAQLDGWLQLAIYMKTLGSDLPQLKNTLEKWLAENPQHPAAIYTPKAITDILALEIVKPTNTALLLPLTGK
FAKQAQFIRDGFVFAMMNDADRQTNATLTIIDTNAETLESVDAILTSKQIDFVVGPLIKGNIEKLQQFQQSRGQMIPTLA
LNIPDQIDTTAGACYLALSPEQEVAQAAKHLFTQGYRYPLILAPQNAYGERVVEAFNEEWRRYSKNKVAVNLFGDKRQLQ
RNINSIFGLQDSQQNIAQMESLLGMGLESQPRSRRDIDAVYIVANSSELTLIKPFIEVAINPDTRPPKLFSNSNSNTGGR
QYEDLSGVTYSDIPLLIQPAPSIKEQLTQIWPESSNAERRLQALGMDAYRLMVELPQMKIVEGYTIDGQTGVLSIDEQCV
VQREISWAEHGVR
>Mature_653_residues
MCDVTQITNRGWDNIKNWSTIWHGFIICHLFTITSTINIETILHGLTKELMAMNHHQRRSVPRLLTPIALSIVLSACSTQ
PSSPDVVDITAQPLLTAQTYLMRADASQGNQQNDWLIMALKAAIEENNPDQAQLLIMRLAKQPLTPTQQAQWQLLRAQLL
ANTEQYQEALEQLSFQANWSLPQVQWQQYHQLRADIFTALDRSFDSTRELVALYGLSSNKDKEALADQIWANLNHYSASK
IIKLSTEPDEAQLDGWLQLAIYMKTLGSDLPQLKNTLEKWLAENPQHPAAIYTPKAITDILALEIVKPTNTALLLPLTGK
FAKQAQFIRDGFVFAMMNDADRQTNATLTIIDTNAETLESVDAILTSKQIDFVVGPLIKGNIEKLQQFQQSRGQMIPTLA
LNIPDQIDTTAGACYLALSPEQEVAQAAKHLFTQGYRYPLILAPQNAYGERVVEAFNEEWRRYSKNKVAVNLFGDKRQLQ
RNINSIFGLQDSQQNIAQMESLLGMGLESQPRSRRDIDAVYIVANSSELTLIKPFIEVAINPDTRPPKLFSNSNSNTGGR
QYEDLSGVTYSDIPLLIQPAPSIKEQLTQIWPESSNAERRLQALGMDAYRLMVELPQMKIVEGYTIDGQTGVLSIDEQCV
VQREISWAEHGVR

Specific function: Unknown

COG id: COG3107

COG function: function code R; Putative lipoprotein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yraM [H]

Homologues:

Organism=Escherichia coli, GI1789537, Length=322, Percent_Identity=32.2981366459627, Blast_Score=157, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007443 [H]

Pfam domain/function: PF04348 LppC [H]

EC number: NA

Molecular weight: Translated: 73483; Mature: 73483

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCDVTQITNRGWDNIKNWSTIWHGFIICHLFTITSTINIETILHGLTKELMAMNHHQRRS
CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VPRLLTPIALSIVLSACSTQPSSPDVVDITAQPLLTAQTYLMRADASQGNQQNDWLIMAL
HHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCEEEEE
KAAIEENNPDQAQLLIMRLAKQPLTPTQQAQWQLLRAQLLANTEQYQEALEQLSFQANWS
HHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCC
LPQVQWQQYHQLRADIFTALDRSFDSTRELVALYGLSSNKDKEALADQIWANLNHYSASK
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCC
IIKLSTEPDEAQLDGWLQLAIYMKTLGSDLPQLKNTLEKWLAENPQHPAAIYTPKAITDI
EEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEECHHHHHHH
LALEIVKPTNTALLLPLTGKFAKQAQFIRDGFVFAMMNDADRQTNATLTIIDTNAETLES
HHHEEECCCCCEEEEECCCHHHHHHHHHHCCEEEEEECCCCCCCCCEEEEEECCHHHHHH
VDAILTSKQIDFVVGPLIKGNIEKLQQFQQSRGQMIPTLALNIPDQIDTTAGACYLALSP
HHHHHHHCCHHHHCCCHHCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEECC
EQEVAQAAKHLFTQGYRYPLILAPQNAYGERVVEAFNEEWRRYSKNKVAVNLFGDKRQLQ
HHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH
RNINSIFGLQDSQQNIAQMESLLGMGLESQPRSRRDIDAVYIVANSSELTLIKPFIEVAI
HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEHHEEE
NPDTRPPKLFSNSNSNTGGRQYEDLSGVTYSDIPLLIQPAPSIKEQLTQIWPESSNAERR
CCCCCCCCCCCCCCCCCCCCCHHHCCCCEECCCCEEEECCCHHHHHHHHHCCCCCCHHHH
LQALGMDAYRLMVELPQMKIVEGYTIDGQTGVLSIDEQCVVQREISWAEHGVR
HHHHCHHHHHHHHHCCCEEEECCEEECCCCCEEECCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MCDVTQITNRGWDNIKNWSTIWHGFIICHLFTITSTINIETILHGLTKELMAMNHHQRRS
CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VPRLLTPIALSIVLSACSTQPSSPDVVDITAQPLLTAQTYLMRADASQGNQQNDWLIMAL
HHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCEEEEE
KAAIEENNPDQAQLLIMRLAKQPLTPTQQAQWQLLRAQLLANTEQYQEALEQLSFQANWS
HHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCC
LPQVQWQQYHQLRADIFTALDRSFDSTRELVALYGLSSNKDKEALADQIWANLNHYSASK
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCC
IIKLSTEPDEAQLDGWLQLAIYMKTLGSDLPQLKNTLEKWLAENPQHPAAIYTPKAITDI
EEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEECHHHHHHH
LALEIVKPTNTALLLPLTGKFAKQAQFIRDGFVFAMMNDADRQTNATLTIIDTNAETLES
HHHEEECCCCCEEEEECCCHHHHHHHHHHCCEEEEEECCCCCCCCCEEEEEECCHHHHHH
VDAILTSKQIDFVVGPLIKGNIEKLQQFQQSRGQMIPTLALNIPDQIDTTAGACYLALSP
HHHHHHHCCHHHHCCCHHCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEECC
EQEVAQAAKHLFTQGYRYPLILAPQNAYGERVVEAFNEEWRRYSKNKVAVNLFGDKRQLQ
HHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH
RNINSIFGLQDSQQNIAQMESLLGMGLESQPRSRRDIDAVYIVANSSELTLIKPFIEVAI
HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEHHEEE
NPDTRPPKLFSNSNSNTGGRQYEDLSGVTYSDIPLLIQPAPSIKEQLTQIWPESSNAERR
CCCCCCCCCCCCCCCCCCCCCHHHCCCCEECCCCEEEECCCHHHHHHHHHCCCCCCHHHH
LQALGMDAYRLMVELPQMKIVEGYTIDGQTGVLSIDEQCVVQREISWAEHGVR
HHHHCHHHHHHHHHCCCEEEECCEEECCCCCEEECCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]