| Definition | Vibrio cholerae M66-2 chromosome I, complete genome. |
|---|---|
| Accession | NC_012578 |
| Length | 2,892,523 |
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The map label for this gene is imp [H]
Identifier: 227080657
GI number: 227080657
Start: 459602
End: 462001
Strand: Reverse
Name: imp [H]
Synonym: VCM66_0431
Alternate gene names: 227080657
Gene position: 462001-459602 (Counterclockwise)
Preceding gene: 227080659
Following gene: 227080656
Centisome position: 15.97
GC content: 46.5
Gene sequence:
>2400_bases ATGTACAACCCCATGTCATGCTTTTCCCGCACGTTTTTAGCCGCTTCGATTAGCGCTGCACTCTTTGCACCTCAGATACA AGCAGAAGCGAGTGTGGATGACAATCGCGCTCAATTACCTAATGGTGAGCAGTGTTTAGTCAACCAGCCTGAGCCTACTA ATCCCGGCCAACAGCCTATCAATGTCGAAGCGGATAAGCTAGAGGCAATCAATGGGCAGAAGGCGACCTATTCGGGGAAT GTCGTTGTCGTGCAAGGTAAGAAACGCATTGCTGCGGATAACGTGACTTTGCATCAACAAGAGAATGTGGTTGTCGCTGA AGGTAATGTTCAGTTCAGTGATGGTGAGATAAAAACACACTCCACCAAAGCGACCAACCATCTCAATACCGATGAAATGA CGCTGGAAAATACTCGCTACCAGTTTTTGTGTGAACCGGGCCGTGGTGAAGCGGTGTATGTTTCGAAAACGGGCAAAGCC GTGTATGAAATTGAAGATGGCTCCATCACCTCATGTCCTGATGGTGATAATGCATGGCGGATGCGTGCTTCCAGCATTGA TGTGGATCAGAATGAAGAGATTGCGACCTTCTACAATCCGCGTCTTGAAGTGCAAAACGTACCTGTGTTCTATCTCCCCT ATTTGACTGTGCCAATCGGTGATACGCGTAAAACTGGTTTTCTATACCCGACGGCCTCTTACGGCTCACGAAATGGCTAT TCGTTTGAAGTGCCAATTTATTGGAACTTGGCACCCCAATATGACTTAGAAACCACCTTTAACTATATGCAAAAGCGCGG AACACAACTGAATAGTGTGTTCCGTTATCTGACCGATTTTGGTGCGGGTCAAATCAAATCTGAATATCTTGCCGACGATC AGCTGCACACTGAATTAGGCGATCGCTGGGCATTCCAATATGAGCATAACGGCATTTTCCAACAAGCTTGGAAATTTGAA ATCGACTACTCCAAAGTCAGCGATATCAACTATTTCTCTGACTTAGATTCGGGAGTCGGTAATCGTGAAGATGGACAACT CATCCAAGAAGGGCGTGCCACTTACCGTAGCGACAACTGGGATTCTGCGCTGTTGGTGCGGGATTTCCAACTACTGACCA AGGATACCACTAGCACGAACTTGCCTTATCGGTTAATGCCCCAGCTCAGCTACAACTACTATGCTCCAGAGACGATGAAG TATCTGGATCTTGACCTTGTCAGCCATGTCTCGCGCTTTGAAACCGATGCAAGAGGCAAACCCTCTGCAACTCGAGTACA TATTGAACCTGGGCTCAAAATTCCGTTCAGCAACACTTGGGGCAACTGGACAACCGAAGCACGTGTCTTGGGCACCTACT ATCAACAAGATCTTGATAAGACCACAGATGCCAAACTGGAAGAGAGTGTGACACGCGTTATCCCTGAGATTCGCAGTGTA GCGGGCATTGTGCTTGAACGAGATACGGTACTGCTTGATGACTACACTCAAACCCTTGAACCCAAAATTCAATATCTCTA CGTGCCAGAAAAATATCAGGACAATATTGGTCTGTATGATTCCACTTTGCTGCAAACCGACTACTACGGGCTATTCCGCA GTCGCAAATACAGCGGCGTAGACCGAATTGAGTCCGCCAACCAAGTCAGCTACGGTGCATCGACTCGTTTCTTTGATAGC AACTATAAAGAGCGCCTCAATATCGCGTTTGGTCAGATTTTCTATCTGGACAGCAAGCTCAATCCGTCCAATAAAAATCC AGACAGCACATCGGATAAAACCAGCTATTCCGCTTGGGCCGTTGAGATGGACTTTAACTTTGCTGACTATCTGTTCTATC ACGGCGGCATTCAATACGACATCGATAGCCAAGCCGTTCAACTTGGCAACAGTACATTAGAATATCGAGTCGCCAGCGGT TATATTCAAGCTAACTACCGCTATGTTGCTAAGGATTATATTCAAGCTAACTACCGCTATGTTGCTAAGGATTATATTCG CAATACCGTCGGTGACAGCATTACCAATATTGATGACATTACCCGAGACGGTATTTCACAAGCGGGCATTTTGGCGGGTT ACCAGTTGAGTCGTAAATGGTCGGCTAGCGGTCAATATTACTATGACCTGACCACAGACGAGGCGTTAGAGTGGCTGGCT AACCTGACTTACACTTCAGATTGTTGGTATGTGGGCTTTACTTACAGTAACCAATTAAAAAGCTGGAATGGCAACTTTGT TACGGATCCTTACGCGACTCCGATTTATGAGAATAACTTCAGCTTTAACATCGGGATTATTGGTTTTGGCACCAGCATTG GCGCAGGCTCAAGCATGACAGGTGTCGATAGCGCAGGTAACTCACTCGGTTATGGTCGCCCATTCTTCCTGAATAACTAA
Upstream 100 bases:
>100_bases AGTGGCGCAAGCGTCAATTTCCTTTATGATAAGGACCGTTTATATTTCAGGCTCCTAAGTTCGGAATCCATCAAGTTCAA CAGGCCACAAGTTCAACAGG
Downstream 100 bases:
>100_bases TTCACCTAGCCTGAGGAAACTCAGGCTTAAAACATTTTAGATAGGACTGTACATGAAATTGTGGAAACCCACACTAATTA GCGTTCTCAGTGCGCTGACT
Product: organic solvent tolerance protein
Products: NA
Alternate protein names: Organic solvent tolerance protein [H]
Number of amino acids: Translated: 799; Mature: 799
Protein sequence:
>799_residues MYNPMSCFSRTFLAASISAALFAPQIQAEASVDDNRAQLPNGEQCLVNQPEPTNPGQQPINVEADKLEAINGQKATYSGN VVVVQGKKRIAADNVTLHQQENVVVAEGNVQFSDGEIKTHSTKATNHLNTDEMTLENTRYQFLCEPGRGEAVYVSKTGKA VYEIEDGSITSCPDGDNAWRMRASSIDVDQNEEIATFYNPRLEVQNVPVFYLPYLTVPIGDTRKTGFLYPTASYGSRNGY SFEVPIYWNLAPQYDLETTFNYMQKRGTQLNSVFRYLTDFGAGQIKSEYLADDQLHTELGDRWAFQYEHNGIFQQAWKFE IDYSKVSDINYFSDLDSGVGNREDGQLIQEGRATYRSDNWDSALLVRDFQLLTKDTTSTNLPYRLMPQLSYNYYAPETMK YLDLDLVSHVSRFETDARGKPSATRVHIEPGLKIPFSNTWGNWTTEARVLGTYYQQDLDKTTDAKLEESVTRVIPEIRSV AGIVLERDTVLLDDYTQTLEPKIQYLYVPEKYQDNIGLYDSTLLQTDYYGLFRSRKYSGVDRIESANQVSYGASTRFFDS NYKERLNIAFGQIFYLDSKLNPSNKNPDSTSDKTSYSAWAVEMDFNFADYLFYHGGIQYDIDSQAVQLGNSTLEYRVASG YIQANYRYVAKDYIQANYRYVAKDYIRNTVGDSITNIDDITRDGISQAGILAGYQLSRKWSASGQYYYDLTTDEALEWLA NLTYTSDCWYVGFTYSNQLKSWNGNFVTDPYATPIYENNFSFNIGIIGFGTSIGAGSSMTGVDSAGNSLGYGRPFFLNN
Sequences:
>Translated_799_residues MYNPMSCFSRTFLAASISAALFAPQIQAEASVDDNRAQLPNGEQCLVNQPEPTNPGQQPINVEADKLEAINGQKATYSGN VVVVQGKKRIAADNVTLHQQENVVVAEGNVQFSDGEIKTHSTKATNHLNTDEMTLENTRYQFLCEPGRGEAVYVSKTGKA VYEIEDGSITSCPDGDNAWRMRASSIDVDQNEEIATFYNPRLEVQNVPVFYLPYLTVPIGDTRKTGFLYPTASYGSRNGY SFEVPIYWNLAPQYDLETTFNYMQKRGTQLNSVFRYLTDFGAGQIKSEYLADDQLHTELGDRWAFQYEHNGIFQQAWKFE IDYSKVSDINYFSDLDSGVGNREDGQLIQEGRATYRSDNWDSALLVRDFQLLTKDTTSTNLPYRLMPQLSYNYYAPETMK YLDLDLVSHVSRFETDARGKPSATRVHIEPGLKIPFSNTWGNWTTEARVLGTYYQQDLDKTTDAKLEESVTRVIPEIRSV AGIVLERDTVLLDDYTQTLEPKIQYLYVPEKYQDNIGLYDSTLLQTDYYGLFRSRKYSGVDRIESANQVSYGASTRFFDS NYKERLNIAFGQIFYLDSKLNPSNKNPDSTSDKTSYSAWAVEMDFNFADYLFYHGGIQYDIDSQAVQLGNSTLEYRVASG YIQANYRYVAKDYIQANYRYVAKDYIRNTVGDSITNIDDITRDGISQAGILAGYQLSRKWSASGQYYYDLTTDEALEWLA NLTYTSDCWYVGFTYSNQLKSWNGNFVTDPYATPIYENNFSFNIGIIGFGTSIGAGSSMTGVDSAGNSLGYGRPFFLNN >Mature_799_residues MYNPMSCFSRTFLAASISAALFAPQIQAEASVDDNRAQLPNGEQCLVNQPEPTNPGQQPINVEADKLEAINGQKATYSGN VVVVQGKKRIAADNVTLHQQENVVVAEGNVQFSDGEIKTHSTKATNHLNTDEMTLENTRYQFLCEPGRGEAVYVSKTGKA VYEIEDGSITSCPDGDNAWRMRASSIDVDQNEEIATFYNPRLEVQNVPVFYLPYLTVPIGDTRKTGFLYPTASYGSRNGY SFEVPIYWNLAPQYDLETTFNYMQKRGTQLNSVFRYLTDFGAGQIKSEYLADDQLHTELGDRWAFQYEHNGIFQQAWKFE IDYSKVSDINYFSDLDSGVGNREDGQLIQEGRATYRSDNWDSALLVRDFQLLTKDTTSTNLPYRLMPQLSYNYYAPETMK YLDLDLVSHVSRFETDARGKPSATRVHIEPGLKIPFSNTWGNWTTEARVLGTYYQQDLDKTTDAKLEESVTRVIPEIRSV AGIVLERDTVLLDDYTQTLEPKIQYLYVPEKYQDNIGLYDSTLLQTDYYGLFRSRKYSGVDRIESANQVSYGASTRFFDS NYKERLNIAFGQIFYLDSKLNPSNKNPDSTSDKTSYSAWAVEMDFNFADYLFYHGGIQYDIDSQAVQLGNSTLEYRVASG YIQANYRYVAKDYIQANYRYVAKDYIRNTVGDSITNIDDITRDGISQAGILAGYQLSRKWSASGQYYYDLTTDEALEWLA NLTYTSDCWYVGFTYSNQLKSWNGNFVTDPYATPIYENNFSFNIGIIGFGTSIGAGSSMTGVDSAGNSLGYGRPFFLNN
Specific function: Involved in the assembly of LPS in the outer leaflet of the outer membrane. Determines N-hexane tolerance and is involved in outer membrane permeability. Essential for envelope biogenesis [H]
COG id: COG1452
COG function: function code M; Organic solvent tolerance protein OstA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptD family [H]
Homologues:
Organism=Escherichia coli, GI1786239, Length=798, Percent_Identity=35.7142857142857, Blast_Score=473, Evalue=1e-134,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020889 - InterPro: IPR005653 - InterPro: IPR007543 [H]
Pfam domain/function: PF03968 OstA; PF04453 OstA_C [H]
EC number: NA
Molecular weight: Translated: 90504; Mature: 90504
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYNPMSCFSRTFLAASISAALFAPQIQAEASVDDNRAQLPNGEQCLVNQPEPTNPGQQPI CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC NVEADKLEAINGQKATYSGNVVVVQGKKRIAADNVTLHQQENVVVAEGNVQFSDGEIKTH CCCHHHHHCCCCCCEEECCCEEEEECCCEEEECCEEEEECCCEEEECCCEEECCCCEEEC STKATNHLNTDEMTLENTRYQFLCEPGRGEAVYVSKTGKAVYEIEDGSITSCPDGDNAWR CCCCCCCCCCCCEEECCCCEEEEEECCCCCEEEEEECCCEEEEECCCCEECCCCCCCCEE MRASSIDVDQNEEIATFYNPRLEVQNVPVFYLPYLTVPIGDTRKTGFLYPTASYGSRNGY EEECCCCCCCCCCEEEEECCEEEEECCCEEEEEEEEEECCCCCCCEEEEECCCCCCCCCE SFEVPIYWNLAPQYDLETTFNYMQKRGTQLNSVFRYLTDFGAGQIKSEYLADDQLHTELG EEEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHC DRWAFQYEHNGIFQQAWKFEIDYSKVSDINYFSDLDSGVGNREDGQLIQEGRATYRSDNW CEEEEEEECCCCCHHHEEEEECHHHCCCCHHHHHHHCCCCCCCCCHHHHHCCHHCCCCCC DSALLVRDFQLLTKDTTSTNLPYRLMPQLSYNYYAPETMKYLDLDLVSHVSRFETDARGK CCEEEEEHHHHHCCCCCCCCCCEEEECCCCCCEECCCHHHHHHHHHHHHHHHHCCCCCCC PSATRVHIEPGLKIPFSNTWGNWTTEARVLGTYYQQDLDKTTDAKLEESVTRVIPEIRSV CCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH AGIVLERDTVLLDDYTQTLEPKIQYLYVPEKYQDNIGLYDSTLLQTDYYGLFRSRKYSGV HHEEEECCEEEECCCHHCCCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCH DRIESANQVSYGASTRFFDSNYKERLNIAFGQIFYLDSKLNPSNKNPDSTSDKTSYSAWA HHHCCCCCCCCCCCEEEECCCCHHHHEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEE VEMDFNFADYLFYHGGIQYDIDSQAVQLGNSTLEYRVASGYIQANYRYVAKDYIQANYRY EEECCCHHHHHEECCCEEECCCHHHHHCCCCEEEEEEECCEEEECEEEEEHHHHHCCCCH VAKDYIRNTVGDSITNIDDITRDGISQAGILAGYQLSRKWSASGQYYYDLTTDEALEWLA HHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEECEEECCEECCCCCEEEECCHHHHHHHHH NLTYTSDCWYVGFTYSNQLKSWNGNFVTDPYATPIYENNFSFNIGIIGFGTSIGAGSSMT CCEEECCEEEEEEEECCCCCCCCCCEEECCCCCCEECCCCEEEEEEEEECCCCCCCCCCC GVDSAGNSLGYGRPFFLNN CCCCCCCCCCCCCCEEECC >Mature Secondary Structure MYNPMSCFSRTFLAASISAALFAPQIQAEASVDDNRAQLPNGEQCLVNQPEPTNPGQQPI CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC NVEADKLEAINGQKATYSGNVVVVQGKKRIAADNVTLHQQENVVVAEGNVQFSDGEIKTH CCCHHHHHCCCCCCEEECCCEEEEECCCEEEECCEEEEECCCEEEECCCEEECCCCEEEC STKATNHLNTDEMTLENTRYQFLCEPGRGEAVYVSKTGKAVYEIEDGSITSCPDGDNAWR CCCCCCCCCCCCEEECCCCEEEEEECCCCCEEEEEECCCEEEEECCCCEECCCCCCCCEE MRASSIDVDQNEEIATFYNPRLEVQNVPVFYLPYLTVPIGDTRKTGFLYPTASYGSRNGY EEECCCCCCCCCCEEEEECCEEEEECCCEEEEEEEEEECCCCCCCEEEEECCCCCCCCCE SFEVPIYWNLAPQYDLETTFNYMQKRGTQLNSVFRYLTDFGAGQIKSEYLADDQLHTELG EEEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHC DRWAFQYEHNGIFQQAWKFEIDYSKVSDINYFSDLDSGVGNREDGQLIQEGRATYRSDNW CEEEEEEECCCCCHHHEEEEECHHHCCCCHHHHHHHCCCCCCCCCHHHHHCCHHCCCCCC DSALLVRDFQLLTKDTTSTNLPYRLMPQLSYNYYAPETMKYLDLDLVSHVSRFETDARGK CCEEEEEHHHHHCCCCCCCCCCEEEECCCCCCEECCCHHHHHHHHHHHHHHHHCCCCCCC PSATRVHIEPGLKIPFSNTWGNWTTEARVLGTYYQQDLDKTTDAKLEESVTRVIPEIRSV CCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH AGIVLERDTVLLDDYTQTLEPKIQYLYVPEKYQDNIGLYDSTLLQTDYYGLFRSRKYSGV HHEEEECCEEEECCCHHCCCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCH DRIESANQVSYGASTRFFDSNYKERLNIAFGQIFYLDSKLNPSNKNPDSTSDKTSYSAWA HHHCCCCCCCCCCCEEEECCCCHHHHEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEE VEMDFNFADYLFYHGGIQYDIDSQAVQLGNSTLEYRVASGYIQANYRYVAKDYIQANYRY EEECCCHHHHHEECCCEEECCCHHHHHCCCCEEEEEEECCEEEECEEEEEHHHHHCCCCH VAKDYIRNTVGDSITNIDDITRDGISQAGILAGYQLSRKWSASGQYYYDLTTDEALEWLA HHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEECEEECCEECCCCCEEEECCHHHHHHHHH NLTYTSDCWYVGFTYSNQLKSWNGNFVTDPYATPIYENNFSFNIGIIGFGTSIGAGSSMT CCEEECCEEEEEEEECCCCCCCCCCEEECCCCCCEECCCCEEEEEEEEECCCCCCCCCCC GVDSAGNSLGYGRPFFLNN CCCCCCCCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]