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The map label for this gene is rfbV

Identifier: 227080474

GI number: 227080474

Start: 248981

End: 250213

Strand: Reverse

Name: rfbV

Synonym: VCM66_0244

Alternate gene names: NA

Gene position: 250213-248981 (Counterclockwise)

Preceding gene: 227080475

Following gene: 227080459

Centisome position: 8.65

GC content: 35.36

Gene sequence:

>1233_bases
ATGCCATGGAAGACCTACTCACGGAACTTGATGTATGCTGTCATAACTTTGATGTTGAATGTATTAAGCGAATTTTACTT
GATGCACCTACGGGTTATTCGCCACAAAAATGAGAATAAAATGAAAGTATTGCATGTATATAGAACCTGTTATCCTGAAA
CAAAAGGCGGTGTTGAGCAAGTTATTCGATTTATAGCATCGGGAACAAAACCGTTAGGAATAGAAACTAAAATACTTACA
TTATCTGATAATCAAACTTCTTCTTATTATTGTGAAGGAACAGAAATAATCTCAGTAAAAAAATCGATTGAAATCTCTTC
AAATGGATTCTCGTGGAAGCTAATTAGACAATTCAAGAAACTTTCAAAATGGGCTGACATAATCCATTACCATTATCCAT
GGCCAACCGGAGACTTTCTCTCTTTATTTGGCTCATCGAATCCAAGTATTGTAACGTATCATTCCGATATTATTCGTCAA
AAGTGCTTAAAGAAATTATATCAACCACTTGAGAGTCATTTTTTAAATCAAGCAAATATCCTTGTGGCAACATCACCACA
ATATGCACACACAAGCGAGAATTTGTTAAGGCATAAAAATAAGGTAAAAATAATTCCACTTGCCGTTGATGAGAATACTT
ATCCTATCCCATCAAACGATAATATTAATAAATGGCGAGAAAAAGTAGGGGAAGGTTTTTTCTTATTTGTTGGCGTATTA
CGGTACTACAAGGGTCTAGATTTCTTACTTGAAGCAGCAAAAATCAACCAGCTACCTGTTATAATTGCTGGTGACGGTCC
GGAAAGAGTAAAACTAGAGTCTTATATTGCCAAACACAATCTTGAAAACGTTAAGCTAGTAGGATTCATTTCTGAGGAAG
ACAAAGTCATATTACATTTACTTTCTAAAGCTTTTGTTTTCCCATCTCACCTACGCTCAGAAGCTTTTGGTATATCACTT
ATCGAAGCACAAATGTACTGTAAAGCCATTATTAGTAGTGATATTGGCACAGGTTCATCTTATGTGAACATCAATGGCGA
AACAGGGTTAGTTGTTCCGCCAGCTGACAGTCAAAGCTTTTCCGATGCAATGTTAAAAATAGAACATGATACAAAACTTT
GTGAAAAATTAGGTATTAATGCTCGCAAACGTTTTGAACAGGAATTCACAGCACATCGCTATGCACAAAGCTATACTAAA
CTGTATAGTGAACTCTTCGGAAATGTCTGTTGA

Upstream 100 bases:

>100_bases
CCAGGAGAAAAGCTCTATGAAGAGCTACTTATCGGAGAGAATGTGGAAGGCACTAGCCATCAAAAGATCATGACAGCATG
TGAAGAAAAACTGAGTTGGG

Downstream 100 bases:

>100_bases
ACTTGCAATGACATACGGAATATATTAAATTATTTTATGATACATATTTAAAACAGATATTCCCATTAATATCCTGCGTT
GCTTTATTAAACTCAGGATG

Product: lipopolysaccharide biosynthesis protein RfbV

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MPWKTYSRNLMYAVITLMLNVLSEFYLMHLRVIRHKNENKMKVLHVYRTCYPETKGGVEQVIRFIASGTKPLGIETKILT
LSDNQTSSYYCEGTEIISVKKSIEISSNGFSWKLIRQFKKLSKWADIIHYHYPWPTGDFLSLFGSSNPSIVTYHSDIIRQ
KCLKKLYQPLESHFLNQANILVATSPQYAHTSENLLRHKNKVKIIPLAVDENTYPIPSNDNINKWREKVGEGFFLFVGVL
RYYKGLDFLLEAAKINQLPVIIAGDGPERVKLESYIAKHNLENVKLVGFISEEDKVILHLLSKAFVFPSHLRSEAFGISL
IEAQMYCKAIISSDIGTGSSYVNINGETGLVVPPADSQSFSDAMLKIEHDTKLCEKLGINARKRFEQEFTAHRYAQSYTK
LYSELFGNVC

Sequences:

>Translated_410_residues
MPWKTYSRNLMYAVITLMLNVLSEFYLMHLRVIRHKNENKMKVLHVYRTCYPETKGGVEQVIRFIASGTKPLGIETKILT
LSDNQTSSYYCEGTEIISVKKSIEISSNGFSWKLIRQFKKLSKWADIIHYHYPWPTGDFLSLFGSSNPSIVTYHSDIIRQ
KCLKKLYQPLESHFLNQANILVATSPQYAHTSENLLRHKNKVKIIPLAVDENTYPIPSNDNINKWREKVGEGFFLFVGVL
RYYKGLDFLLEAAKINQLPVIIAGDGPERVKLESYIAKHNLENVKLVGFISEEDKVILHLLSKAFVFPSHLRSEAFGISL
IEAQMYCKAIISSDIGTGSSYVNINGETGLVVPPADSQSFSDAMLKIEHDTKLCEKLGINARKRFEQEFTAHRYAQSYTK
LYSELFGNVC
>Mature_409_residues
PWKTYSRNLMYAVITLMLNVLSEFYLMHLRVIRHKNENKMKVLHVYRTCYPETKGGVEQVIRFIASGTKPLGIETKILTL
SDNQTSSYYCEGTEIISVKKSIEISSNGFSWKLIRQFKKLSKWADIIHYHYPWPTGDFLSLFGSSNPSIVTYHSDIIRQK
CLKKLYQPLESHFLNQANILVATSPQYAHTSENLLRHKNKVKIIPLAVDENTYPIPSNDNINKWREKVGEGFFLFVGVLR
YYKGLDFLLEAAKINQLPVIIAGDGPERVKLESYIAKHNLENVKLVGFISEEDKVILHLLSKAFVFPSHLRSEAFGISLI
EAQMYCKAIISSDIGTGSSYVNINGETGLVVPPADSQSFSDAMLKIEHDTKLCEKLGINARKRFEQEFTAHRYAQSYTKL
YSELFGNVC

Specific function: Unknown

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 46839; Mature: 46707

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPWKTYSRNLMYAVITLMLNVLSEFYLMHLRVIRHKNENKMKVLHVYRTCYPETKGGVEQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHEEHHHHHCCCCCCCHHH
VIRFIASGTKPLGIETKILTLSDNQTSSYYCEGTEIISVKKSIEISSNGFSWKLIRQFKK
HHHHHHCCCCCCCCEEEEEEEECCCCCCEEECCCEEEEEEEEEEECCCCCCHHHHHHHHH
LSKWADIIHYHYPWPTGDFLSLFGSSNPSIVTYHSDIIRQKCLKKLYQPLESHFLNQANI
HHHHHHHHEEECCCCCHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCE
LVATSPQYAHTSENLLRHKNKVKIIPLAVDENTYPIPSNDNINKWREKVGEGFFLFVGVL
EEEECCCCCCCHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
RYYKGLDFLLEAAKINQLPVIIAGDGPERVKLESYIAKHNLENVKLVGFISEEDKVILHL
HHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH
LSKAFVFPSHLRSEAFGISLIEAQMYCKAIISSDIGTGSSYVNINGETGLVVPPADSQSF
HHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCCCCCC
SDAMLKIEHDTKLCEKLGINARKRFEQEFTAHRYAQSYTKLYSELFGNVC
HHHHEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PWKTYSRNLMYAVITLMLNVLSEFYLMHLRVIRHKNENKMKVLHVYRTCYPETKGGVEQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHEEHHHHHCCCCCCCHHH
VIRFIASGTKPLGIETKILTLSDNQTSSYYCEGTEIISVKKSIEISSNGFSWKLIRQFKK
HHHHHHCCCCCCCCEEEEEEEECCCCCCEEECCCEEEEEEEEEEECCCCCCHHHHHHHHH
LSKWADIIHYHYPWPTGDFLSLFGSSNPSIVTYHSDIIRQKCLKKLYQPLESHFLNQANI
HHHHHHHHEEECCCCCHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCE
LVATSPQYAHTSENLLRHKNKVKIIPLAVDENTYPIPSNDNINKWREKVGEGFFLFVGVL
EEEECCCCCCCHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
RYYKGLDFLLEAAKINQLPVIIAGDGPERVKLESYIAKHNLENVKLVGFISEEDKVILHL
HHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHH
LSKAFVFPSHLRSEAFGISLIEAQMYCKAIISSDIGTGSSYVNINGETGLVVPPADSQSF
HHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCCCCCC
SDAMLKIEHDTKLCEKLGINARKRFEQEFTAHRYAQSYTKLYSELFGNVC
HHHHEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]