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The map label for this gene is opsX [H]

Identifier: 227080445

GI number: 227080445

Start: 216787

End: 217860

Strand: Reverse

Name: opsX [H]

Synonym: VCM66_0213

Alternate gene names: 227080445

Gene position: 217860-216787 (Counterclockwise)

Preceding gene: 227080446

Following gene: 227080444

Centisome position: 7.53

GC content: 51.68

Gene sequence:

>1074_bases
TTGGCTATGGCATTGTTTCAATCAGCCCCACACTCCCTCTGTATCCTGCGTTTATCGGCGATTGGTGATGTCTGTAATAC
GATAGCTGCCGTACAAGCGATTCAACGCCAATGGCCGCAAACACGCATCACTTGGGTGACGGGTAAACTGGAAGCAGAAC
TTATCCAATCTCTGCCCGATATTCAGGTCATCGTGTTTGATAAAAAACTCGGATGGCGTGCTTATACTCAGCTTTGGCAG
CAATTAAAGTCCGAGCGTTTTGATGCGCTGCTGCACATGCAGTACGCTTTTCGCGCCAGCATTGCGACTTTGGGGATCAA
AGCGCGCTATAAACTGGGTTTTGATGCAGCGCGCAGCCAAGATTTTCAAACTTGGTTTACCAATGTCAAAGTTCCCTCAC
CGGACAAAATGCACGTCTTAGATGGTTTATTGGCATTCGTTGAGCACTTAGGTATTCGCGATATTGAGCCTAAGTGGTCA
CTCACCTGCCAACCTGACGATCTGACATGGGCTGAGGCGCAGTTTCAGCCCGAGCAGCCTCGCTTAGTTGTGGTGCCCGG
AGCAAGCAAAGCTTATAAGAATTGGACGGCAGAGGGCTATGCAGCAGTTATTGAACATGCCCAACAACAAGGCTGGCAAG
TGATCTTGGCCGGAAGCCCAGCACAAGTTGAGCGCGATCTGGCCGCGCAAGTGGAGCAAGCACTCGCTCACCCCGTCTTA
AACTTGGTGGGAAAAAGCACGCTGCAACAGATGCTCGCACTGCTCGCAAAGGCCGATTTGGTGATCGCCCCCGATACAGG
CCCTGCGCATATGGCGAACGCCATGCATACACCAATCATTGGTCTCTACGCTCACCATAATCCTGAGCGCACAGGTCCAT
ACCATTATCGCCACTATGTCGTTTCCGCTTACCAAGAAGCTTTACTTGCGGAAACCGGTAAAATGCCGCAGCAGGTTGAT
TGGCGCACTCGGGTTAAAGACCCCAATGCGATGCAGCGCATCACTGCGCAACAAGTGATTGCGATGTTTGAGCGTGCCGC
TGCTGACATCATGGCCACACAGGTGAACGATTGA

Upstream 100 bases:

>100_bases
TTTTGCAGTTTTGCTCTGCATCTGGCGTGCTGCATTTTACATTTTCTGGTCAGCTCTGCATAATTCTGGCTCAATTATCG
AATAGTTTTATCGAATAGGC

Downstream 100 bases:

>100_bases
TACACCTTTTATACCCAGATTTATTCGTAACGAGGATTTTTCGTGAGTAAACCAACGCTTGCTGTCGCATTGATAGTAAA
AAATGAAGCGCGTCATCTGG

Product: putative lipopolysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MAMALFQSAPHSLCILRLSAIGDVCNTIAAVQAIQRQWPQTRITWVTGKLEAELIQSLPDIQVIVFDKKLGWRAYTQLWQ
QLKSERFDALLHMQYAFRASIATLGIKARYKLGFDAARSQDFQTWFTNVKVPSPDKMHVLDGLLAFVEHLGIRDIEPKWS
LTCQPDDLTWAEAQFQPEQPRLVVVPGASKAYKNWTAEGYAAVIEHAQQQGWQVILAGSPAQVERDLAAQVEQALAHPVL
NLVGKSTLQQMLALLAKADLVIAPDTGPAHMANAMHTPIIGLYAHHNPERTGPYHYRHYVVSAYQEALLAETGKMPQQVD
WRTRVKDPNAMQRITAQQVIAMFERAAADIMATQVND

Sequences:

>Translated_357_residues
MAMALFQSAPHSLCILRLSAIGDVCNTIAAVQAIQRQWPQTRITWVTGKLEAELIQSLPDIQVIVFDKKLGWRAYTQLWQ
QLKSERFDALLHMQYAFRASIATLGIKARYKLGFDAARSQDFQTWFTNVKVPSPDKMHVLDGLLAFVEHLGIRDIEPKWS
LTCQPDDLTWAEAQFQPEQPRLVVVPGASKAYKNWTAEGYAAVIEHAQQQGWQVILAGSPAQVERDLAAQVEQALAHPVL
NLVGKSTLQQMLALLAKADLVIAPDTGPAHMANAMHTPIIGLYAHHNPERTGPYHYRHYVVSAYQEALLAETGKMPQQVD
WRTRVKDPNAMQRITAQQVIAMFERAAADIMATQVND
>Mature_356_residues
AMALFQSAPHSLCILRLSAIGDVCNTIAAVQAIQRQWPQTRITWVTGKLEAELIQSLPDIQVIVFDKKLGWRAYTQLWQQ
LKSERFDALLHMQYAFRASIATLGIKARYKLGFDAARSQDFQTWFTNVKVPSPDKMHVLDGLLAFVEHLGIRDIEPKWSL
TCQPDDLTWAEAQFQPEQPRLVVVPGASKAYKNWTAEGYAAVIEHAQQQGWQVILAGSPAQVERDLAAQVEQALAHPVLN
LVGKSTLQQMLALLAKADLVIAPDTGPAHMANAMHTPIIGLYAHHNPERTGPYHYRHYVVSAYQEALLAETGKMPQQVDW
RTRVKDPNAMQRITAQQVIAMFERAAADIMATQVND

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=281, Percent_Identity=23.1316725978648, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1790050, Length=307, Percent_Identity=21.4983713355049, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 39992; Mature: 39861

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMALFQSAPHSLCILRLSAIGDVCNTIAAVQAIQRQWPQTRITWVTGKLEAELIQSLPD
CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHCCCC
IQVIVFDKKLGWRAYTQLWQQLKSERFDALLHMQYAFRASIATLGIKARYKLGFDAARSQ
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCHHHCCC
DFQTWFTNVKVPSPDKMHVLDGLLAFVEHLGIRDIEPKWSLTCQPDDLTWAEAQFQPEQP
CHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCHHCCCCCCCC
RLVVVPGASKAYKNWTAEGYAAVIEHAQQQGWQVILAGSPAQVERDLAAQVEQALAHPVL
CEEEECCCCHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
NLVGKSTLQQMLALLAKADLVIAPDTGPAHMANAMHTPIIGLYAHHNPERTGPYHYRHYV
HHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHH
VSAYQEALLAETGKMPQQVDWRTRVKDPNAMQRITAQQVIAMFERAAADIMATQVND
HHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AMALFQSAPHSLCILRLSAIGDVCNTIAAVQAIQRQWPQTRITWVTGKLEAELIQSLPD
CCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHCCCC
IQVIVFDKKLGWRAYTQLWQQLKSERFDALLHMQYAFRASIATLGIKARYKLGFDAARSQ
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCHHHCCC
DFQTWFTNVKVPSPDKMHVLDGLLAFVEHLGIRDIEPKWSLTCQPDDLTWAEAQFQPEQP
CHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCHHCCCCCCCC
RLVVVPGASKAYKNWTAEGYAAVIEHAQQQGWQVILAGSPAQVERDLAAQVEQALAHPVL
CEEEECCCCHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
NLVGKSTLQQMLALLAKADLVIAPDTGPAHMANAMHTPIIGLYAHHNPERTGPYHYRHYV
HHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHH
VSAYQEALLAETGKMPQQVDWRTRVKDPNAMQRITAQQVIAMFERAAADIMATQVND
HHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]