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The map label for this gene is secF [H]

Identifier: 226950491

GI number: 226950491

Start: 3489051

End: 3489914

Strand: Reverse

Name: secF [H]

Synonym: CLM_3467

Alternate gene names: 226950491

Gene position: 3489914-3489051 (Counterclockwise)

Preceding gene: 226950492

Following gene: 226950490

Centisome position: 83.99

GC content: 26.27

Gene sequence:

>864_bases
ATGCTAAAGATAATAGAAAAAACAAAAATTTGGTTTTCTATTTCCTTAATAATTATACTTACAGGAATGTTTTTTCTTAT
AAAAGATGGATTAAATTATGGAATAGATTTTAAAGGTGGTACTGTTGTACAAATAAATATAGGAAAAGATTTCAAAAAAG
AAGAAGTAGATCAAATAGTAAAAAAGCATACTTCAGATTCTGTAACCAATAAAGTAAACAATACTCAAATAGAAATAAGA
AGTAATTCTTTAACGGATGAGGAAATTAATAAATTGTTTAGTGATGTAAAATCTAAATACAATTTAAAAGATAAAGATTT
AGTTTCTCAACAGAGAATAGGACCATCAGTTGGAAAAGAATTAAAAAGAAAGGCTTTATTGGCGCTTATAATAGCTAATA
TAGCAATGCTTATATATGTTGGAATAAGATTTGAATTTAATTTTGCTCTTGCAGCTATACTTGGATTAGTTCATGATATA
TTAATAACTGTTTCAATATATGCTATATTTAAACTACCTGTGAGTTCAAGCTTTATAGCAGCAGTGCTTACTATAGTAGG
TTACTCCATAAATGATACAATTGTAATATTTGATAGAATAAGAGAAAATCAAAAGAAAATGAGAAGGAAAGATGTATCGG
AGATAGCTAATACATCCATAACTCAAACTATGTCAAGGTCTATAAATACAGTATTAACTACTTTATTTACAATAGTTGCA
GTTTATGTATTTGTGCCTTCTATTAGAGATTTTGCTTTCCCTTTAATAGTTGGTATAATAACAGGATGCTATTCTTCTAT
ATTTATATCTAGTCCTCTTTGGATTTTATTTAAAAAGACCCAATTAGGTAATAAATCAGCATAA

Upstream 100 bases:

>100_bases
ACAGCTATAGTTGTTACTAGATTATTACTAAAGCTAGGTTATGATATAGGCATTCTTAATAGTTTAGCTTGTTTTAGAGT
TAAAAGGGGGGAAAAATAGT

Downstream 100 bases:

>100_bases
TTAGTATATTTGTATAAAAATCCAAGCTTTAAGCTTGGATTTTCTAATTATTAAAGCATAGCATTTATAAAGTTAAAATA
TATTGTAAATGAGAGTAAAA

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MLKIIEKTKIWFSISLIIILTGMFFLIKDGLNYGIDFKGGTVVQINIGKDFKKEEVDQIVKKHTSDSVTNKVNNTQIEIR
SNSLTDEEINKLFSDVKSKYNLKDKDLVSQQRIGPSVGKELKRKALLALIIANIAMLIYVGIRFEFNFALAAILGLVHDI
LITVSIYAIFKLPVSSSFIAAVLTIVGYSINDTIVIFDRIRENQKKMRRKDVSEIANTSITQTMSRSINTVLTTLFTIVA
VYVFVPSIRDFAFPLIVGIITGCYSSIFISSPLWILFKKTQLGNKSA

Sequences:

>Translated_287_residues
MLKIIEKTKIWFSISLIIILTGMFFLIKDGLNYGIDFKGGTVVQINIGKDFKKEEVDQIVKKHTSDSVTNKVNNTQIEIR
SNSLTDEEINKLFSDVKSKYNLKDKDLVSQQRIGPSVGKELKRKALLALIIANIAMLIYVGIRFEFNFALAAILGLVHDI
LITVSIYAIFKLPVSSSFIAAVLTIVGYSINDTIVIFDRIRENQKKMRRKDVSEIANTSITQTMSRSINTVLTTLFTIVA
VYVFVPSIRDFAFPLIVGIITGCYSSIFISSPLWILFKKTQLGNKSA
>Mature_287_residues
MLKIIEKTKIWFSISLIIILTGMFFLIKDGLNYGIDFKGGTVVQINIGKDFKKEEVDQIVKKHTSDSVTNKVNNTQIEIR
SNSLTDEEINKLFSDVKSKYNLKDKDLVSQQRIGPSVGKELKRKALLALIIANIAMLIYVGIRFEFNFALAAILGLVHDI
LITVSIYAIFKLPVSSSFIAAVLTIVGYSINDTIVIFDRIRENQKKMRRKDVSEIANTSITQTMSRSINTVLTTLFTIVA
VYVFVPSIRDFAFPLIVGIITGCYSSIFISSPLWILFKKTQLGNKSA

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=271, Percent_Identity=33.5793357933579, Blast_Score=160, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 32214; Mature: 32214

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKIIEKTKIWFSISLIIILTGMFFLIKDGLNYGIDFKGGTVVQINIGKDFKKEEVDQIV
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEEEECCCCCCHHHHHHHH
KKHTSDSVTNKVNNTQIEIRSNSLTDEEINKLFSDVKSKYNLKDKDLVSQQRIGPSVGKE
HHHCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHH
LKRKALLALIIANIAMLIYVGIRFEFNFALAAILGLVHDILITVSIYAIFKLPVSSSFIA
HHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
AVLTIVGYSINDTIVIFDRIRENQKKMRRKDVSEIANTSITQTMSRSINTVLTTLFTIVA
HHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VYVFVPSIRDFAFPLIVGIITGCYSSIFISSPLWILFKKTQLGNKSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MLKIIEKTKIWFSISLIIILTGMFFLIKDGLNYGIDFKGGTVVQINIGKDFKKEEVDQIV
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEEEECCCCCCHHHHHHHH
KKHTSDSVTNKVNNTQIEIRSNSLTDEEINKLFSDVKSKYNLKDKDLVSQQRIGPSVGKE
HHHCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHH
LKRKALLALIIANIAMLIYVGIRFEFNFALAAILGLVHDILITVSIYAIFKLPVSSSFIA
HHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
AVLTIVGYSINDTIVIFDRIRENQKKMRRKDVSEIANTSITQTMSRSINTVLTTLFTIVA
HHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VYVFVPSIRDFAFPLIVGIITGCYSSIFISSPLWILFKKTQLGNKSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]