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The map label for this gene is recJ [H]

Identifier: 226950490

GI number: 226950490

Start: 3487944

End: 3488822

Strand: Reverse

Name: recJ [H]

Synonym: CLM_3466

Alternate gene names: 226950490

Gene position: 3488822-3487944 (Counterclockwise)

Preceding gene: 226950491

Following gene: 226950489

Centisome position: 83.96

GC content: 25.94

Gene sequence:

>879_bases
ATGGAGAAATTGGTTGATAATTTAGAGTGGTATAAAAATCCAAAAGTTAATAATCCCTTTTTATTAAGTGAAATGGATAA
GGCTTTAAAAAGAATAGTTAAGGCTGTTAATTATAGAAAAAAAATAGTTCTGTATGGATATTATGATTTTGATGGTATAT
CAGCTATATCATTATTGTTATTAGTTTTAAAATTTTTAAATGCGGATGTGGAATATTTTATACCAGATTGTTTAGACGAA
AAGCATAATATAAATTCTACATATATAGAAAATCATATAAAATTTTTGGGTGCAGATTTGATTATAACAGTAGGCTGTGG
AATAAACTCTATTTCAGAAGTAGAATTATGTAAAAGGCTTGGAATGGATATAATAATTACAGATTGGCATAAATGTTTAA
AAGAAAAGCCTAGGTCAACAGTTATATGTCCAAATGAAAATTCATGTTCCTATCCATTTAAATATTTGTCAGCTTCAGGT
ATAGCTTATAAATTGGTGGAAGCACTTTCTATGTATTACAAAATGAAATTCACATATAAATATTTAGATTTAGTTATGTT
GGGTACCATATCAAACACCAATTCTATAAAGGGAGAAAACTTATATATTGTTAAAGAGGGATTAGAAGCTCTGCAGAATA
CAAATAACCATGGATTGAAAGCTCTTCTACATATTGAAAAAATCCAAAATGATGAAATTAATTTATATGATCTTAAAAAA
TTAACGAAAAAATTATCTAAAGTTACAGAACCTACTAATAAAATTAACAACGCAAGGATATTAGTAGAGTTATTTACTAC
AACTAATGAGGATAGAGCCAATCAAATAGCTAAGTATTTAAAAAACGAAATAGATTTTAATATACATAATAAGGAATGA

Upstream 100 bases:

>100_bases
TCTTTATATAATAATATTGAATAAACTTCTAAAATATTTGTCAAAAATCATAATATAAATTATAATATATATGTTTTCTA
TAAAATTGGAGGATATATAA

Downstream 100 bases:

>100_bases
AATTTCATATAATTACTTGAATAGAATGGGCTCTTTAATATATAATAATCTGTGTACAAAATTGAAAAATAAAAATAAAT
TGTTCGTATGAATTTAGGGG

Product: DHH domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MEKLVDNLEWYKNPKVNNPFLLSEMDKALKRIVKAVNYRKKIVLYGYYDFDGISAISLLLLVLKFLNADVEYFIPDCLDE
KHNINSTYIENHIKFLGADLIITVGCGINSISEVELCKRLGMDIIITDWHKCLKEKPRSTVICPNENSCSYPFKYLSASG
IAYKLVEALSMYYKMKFTYKYLDLVMLGTISNTNSIKGENLYIVKEGLEALQNTNNHGLKALLHIEKIQNDEINLYDLKK
LTKKLSKVTEPTNKINNARILVELFTTTNEDRANQIAKYLKNEIDFNIHNKE

Sequences:

>Translated_292_residues
MEKLVDNLEWYKNPKVNNPFLLSEMDKALKRIVKAVNYRKKIVLYGYYDFDGISAISLLLLVLKFLNADVEYFIPDCLDE
KHNINSTYIENHIKFLGADLIITVGCGINSISEVELCKRLGMDIIITDWHKCLKEKPRSTVICPNENSCSYPFKYLSASG
IAYKLVEALSMYYKMKFTYKYLDLVMLGTISNTNSIKGENLYIVKEGLEALQNTNNHGLKALLHIEKIQNDEINLYDLKK
LTKKLSKVTEPTNKINNARILVELFTTTNEDRANQIAKYLKNEIDFNIHNKE
>Mature_292_residues
MEKLVDNLEWYKNPKVNNPFLLSEMDKALKRIVKAVNYRKKIVLYGYYDFDGISAISLLLLVLKFLNADVEYFIPDCLDE
KHNINSTYIENHIKFLGADLIITVGCGINSISEVELCKRLGMDIIITDWHKCLKEKPRSTVICPNENSCSYPFKYLSASG
IAYKLVEALSMYYKMKFTYKYLDLVMLGTISNTNSIKGENLYIVKEGLEALQNTNNHGLKALLHIEKIQNDEINLYDLKK
LTKKLSKVTEPTNKINNARILVELFTTTNEDRANQIAKYLKNEIDFNIHNKE

Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789259, Length=280, Percent_Identity=25.7142857142857, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR004610
- InterPro:   IPR018779 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 33698; Mature: 33698

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKLVDNLEWYKNPKVNNPFLLSEMDKALKRIVKAVNYRKKIVLYGYYDFDGISAISLLL
CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHH
LVLKFLNADVEYFIPDCLDEKHNINSTYIENHIKFLGADLIITVGCGINSISEVELCKRL
HHHHHHCCCCEEECHHHCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHC
GMDIIITDWHKCLKEKPRSTVICPNENSCSYPFKYLSASGIAYKLVEALSMYYKMKFTYK
CCCEEEHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHH
YLDLVMLGTISNTNSIKGENLYIVKEGLEALQNTNNHGLKALLHIEKIQNDEINLYDLKK
HHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHH
LTKKLSKVTEPTNKINNARILVELFTTTNEDRANQIAKYLKNEIDFNIHNKE
HHHHHHHHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEECCCC
>Mature Secondary Structure
MEKLVDNLEWYKNPKVNNPFLLSEMDKALKRIVKAVNYRKKIVLYGYYDFDGISAISLLL
CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHH
LVLKFLNADVEYFIPDCLDEKHNINSTYIENHIKFLGADLIITVGCGINSISEVELCKRL
HHHHHHCCCCEEECHHHCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHC
GMDIIITDWHKCLKEKPRSTVICPNENSCSYPFKYLSASGIAYKLVEALSMYYKMKFTYK
CCCEEEHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHH
YLDLVMLGTISNTNSIKGENLYIVKEGLEALQNTNNHGLKALLHIEKIQNDEINLYDLKK
HHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHH
LTKKLSKVTEPTNKINNARILVELFTTTNEDRANQIAKYLKNEIDFNIHNKE
HHHHHHHHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]