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The map label for this gene is secD [H]

Identifier: 226950492

GI number: 226950492

Start: 3489916

End: 3491184

Strand: Reverse

Name: secD [H]

Synonym: CLM_3468

Alternate gene names: 226950492

Gene position: 3491184-3489916 (Counterclockwise)

Preceding gene: 226950493

Following gene: 226950491

Centisome position: 84.02

GC content: 31.36

Gene sequence:

>1269_bases
ATGAGTTACAATAGGCGTAAAAGTAACAAGGGAAAAAGCGTAATAATATTTACATTATTAGTTGTAGTAATAGCTGTACT
TGCTTATGCAGGATCTTATGGTTTGAAAGTAGGAAATTATAGATTCAAATCATTTGGAGAGACTATTAATAAAGGCTTGG
ATCTTCAAGGTGGAGTGTCAATGCTAGAAGAAATTCAAGCAGATAAAGTAGATGAAAAAACTGTAGATAGAACTATAGAA
CTTATATCTATGAGAGTTAATAAAATGGGTGTTAGTGAAACTACAGTAACAAGAGAAGGTCAAAAAAGAATAAGGATAGA
AATACCAGGTAAATATAATGCAAAAGAAGTTATTGATAGTGTAGGTAAAACGGGAGAATTAAAATTTGTAGGACCAGATA
AGAGCACTATACTTACAGGAAAAGATGTAAAAGATGCAACCGCTTATATAAATCAAGAAGATAATTCACCTACTGTTGGA
TTGGATTTAAATGAGTCAGGAACTAAAAAATTTGCAGATGCCACTAAAAAATTTATTGGTCAACCTATAGCTATATATAT
GGATGAAGAAGAATTGACCAAACCAGTAGTTCAAGCACATATAACTAATGGAAAGGCAGTAATAACAGGAAGTAAAAGTA
TAGAAGAAGCTAAAAGACAAGCTAATATAATAAAATCAGGAGCTTTACCTGTAGCTGTTAAGCCTGTAGAGGTTAGAACA
GTAGGAGCTACATTAGGGGCTAATGCATTAGATCTAAGTGTAAAGGCAGGAGTTGTAGGTGTATCACTTGTATTTTTATT
TATGATTGTATACTATAGAGTACCAGGATTATTGGCTGATATAGCTTTGGCTCTATACATAGTACTACTTTTAGCTACAT
TCTCAACTATAAAAGCTACATTAACATTATCAGGTATAGCAGGTTTCTTATTAACAATAGGTATGGCAGTAGATGCTAAT
GTGCTTATATTTGAAAGAATTAGAGAGGAACTTAAAACAGGAAAATCAATAAAATCTGCTTTAGAATCAGGATATCATAG
AGCACTTTCTTCTATTTTAGACTCTAATATAACTACAATAATAGCAGGTATAGTTTTATATAATTTAGGATCTGGAGCAG
TTAAAGGATTCGCTTTAACTCTTATGATAGGTATAATTCTAAGTATGTTTACAGCTATAGTTGTTACTAGATTATTACTA
AAGCTAGGTTATGATATAGGCATTCTTAATAGTTTAGCTTGTTTTAGAGTTAAAAGGGGGGAAAAATAG

Upstream 100 bases:

>100_bases
TGATTAATAAAAGAAAATTAGTACATAATTTATTATAAAGCAAACATAATAAATTATGTTCTTATTCTTATAATAAACTA
TATATAAAAGGGGGATAAGT

Downstream 100 bases:

>100_bases
TATGCTAAAGATAATAGAAAAAACAAAAATTTGGTTTTCTATTTCCTTAATAATTATACTTACAGGAATGTTTTTTCTTA
TAAAAGATGGATTAAATTAT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MSYNRRKSNKGKSVIIFTLLVVVIAVLAYAGSYGLKVGNYRFKSFGETINKGLDLQGGVSMLEEIQADKVDEKTVDRTIE
LISMRVNKMGVSETTVTREGQKRIRIEIPGKYNAKEVIDSVGKTGELKFVGPDKSTILTGKDVKDATAYINQEDNSPTVG
LDLNESGTKKFADATKKFIGQPIAIYMDEEELTKPVVQAHITNGKAVITGSKSIEEAKRQANIIKSGALPVAVKPVEVRT
VGATLGANALDLSVKAGVVGVSLVFLFMIVYYRVPGLLADIALALYIVLLLATFSTIKATLTLSGIAGFLLTIGMAVDAN
VLIFERIREELKTGKSIKSALESGYHRALSSILDSNITTIIAGIVLYNLGSGAVKGFALTLMIGIILSMFTAIVVTRLLL
KLGYDIGILNSLACFRVKRGEK

Sequences:

>Translated_422_residues
MSYNRRKSNKGKSVIIFTLLVVVIAVLAYAGSYGLKVGNYRFKSFGETINKGLDLQGGVSMLEEIQADKVDEKTVDRTIE
LISMRVNKMGVSETTVTREGQKRIRIEIPGKYNAKEVIDSVGKTGELKFVGPDKSTILTGKDVKDATAYINQEDNSPTVG
LDLNESGTKKFADATKKFIGQPIAIYMDEEELTKPVVQAHITNGKAVITGSKSIEEAKRQANIIKSGALPVAVKPVEVRT
VGATLGANALDLSVKAGVVGVSLVFLFMIVYYRVPGLLADIALALYIVLLLATFSTIKATLTLSGIAGFLLTIGMAVDAN
VLIFERIREELKTGKSIKSALESGYHRALSSILDSNITTIIAGIVLYNLGSGAVKGFALTLMIGIILSMFTAIVVTRLLL
KLGYDIGILNSLACFRVKRGEK
>Mature_421_residues
SYNRRKSNKGKSVIIFTLLVVVIAVLAYAGSYGLKVGNYRFKSFGETINKGLDLQGGVSMLEEIQADKVDEKTVDRTIEL
ISMRVNKMGVSETTVTREGQKRIRIEIPGKYNAKEVIDSVGKTGELKFVGPDKSTILTGKDVKDATAYINQEDNSPTVGL
DLNESGTKKFADATKKFIGQPIAIYMDEEELTKPVVQAHITNGKAVITGSKSIEEAKRQANIIKSGALPVAVKPVEVRTV
GATLGANALDLSVKAGVVGVSLVFLFMIVYYRVPGLLADIALALYIVLLLATFSTIKATLTLSGIAGFLLTIGMAVDANV
LIFERIREELKTGKSIKSALESGYHRALSSILDSNITTIIAGIVLYNLGSGAVKGFALTLMIGIILSMFTAIVVTRLLLK
LGYDIGILNSLACFRVKRGEK

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=396, Percent_Identity=35.1010101010101, Blast_Score=212, Evalue=4e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 45448; Mature: 45317

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYNRRKSNKGKSVIIFTLLVVVIAVLAYAGSYGLKVGNYRFKSFGETINKGLDLQGGVS
CCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCCCCCCHHH
MLEEIQADKVDEKTVDRTIELISMRVNKMGVSETTVTREGQKRIRIEIPGKYNAKEVIDS
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHEECCCCCEEEEECCCCCCHHHHHHH
VGKTGELKFVGPDKSTILTGKDVKDATAYINQEDNSPTVGLDLNESGTKKFADATKKFIG
CCCCCCEEEECCCCCEEECCCCCHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCC
QPIAIYMDEEELTKPVVQAHITNGKAVITGSKSIEEAKRQANIIKSGALPVAVKPVEVRT
CCEEEEECHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEECCEEEEE
VGATLGANALDLSVKAGVVGVSLVFLFMIVYYRVPGLLADIALALYIVLLLATFSTIKAT
ECHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
LTLSGIAGFLLTIGMAVDANVLIFERIREELKTGKSIKSALESGYHRALSSILDSNITTI
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHH
IAGIVLYNLGSGAVKGFALTLMIGIILSMFTAIVVTRLLLKLGYDIGILNSLACFRVKRG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
EK
CC
>Mature Secondary Structure 
SYNRRKSNKGKSVIIFTLLVVVIAVLAYAGSYGLKVGNYRFKSFGETINKGLDLQGGVS
CCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCCCCCCHHH
MLEEIQADKVDEKTVDRTIELISMRVNKMGVSETTVTREGQKRIRIEIPGKYNAKEVIDS
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHEECCCCCEEEEECCCCCCHHHHHHH
VGKTGELKFVGPDKSTILTGKDVKDATAYINQEDNSPTVGLDLNESGTKKFADATKKFIG
CCCCCCEEEECCCCCEEECCCCCHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCC
QPIAIYMDEEELTKPVVQAHITNGKAVITGSKSIEEAKRQANIIKSGALPVAVKPVEVRT
CCEEEEECHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEECCEEEEE
VGATLGANALDLSVKAGVVGVSLVFLFMIVYYRVPGLLADIALALYIVLLLATFSTIKAT
ECHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
LTLSGIAGFLLTIGMAVDANVLIFERIREELKTGKSIKSALESGYHRALSSILDSNITTI
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHH
IAGIVLYNLGSGAVKGFALTLMIGIILSMFTAIVVTRLLLKLGYDIGILNSLACFRVKRG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
EK
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]