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The map label for this gene is ygeY [H]

Identifier: 226950313

GI number: 226950313

Start: 3303558

End: 3304775

Strand: Reverse

Name: ygeY [H]

Synonym: CLM_3278

Alternate gene names: 226950313

Gene position: 3304775-3303558 (Counterclockwise)

Preceding gene: 226950314

Following gene: 226950312

Centisome position: 79.53

GC content: 33.09

Gene sequence:

>1218_bases
ATGGAAAACATTAAAAAGGAAGAAATATTAAAATTAGCTGAAAAATATAAACCAGAAATGTCAAAATTCTTAAGAGATAT
GGCTAGAATTCCAAGTGAAAGTTGCGATGAAAAAGGCGTAATACTCAGAATAAAAGAAGAGATGGAAAAAGTAGGCTTTG
ATAAAGTAGAAATAGATCCTATGGGAAATGTATTAGGATACATAGGCCATGGAAAACATGTTATCGCTATGGATGCTCAC
ATAGATACAGTTGGAATAGGTGATAGAAATTTATGGAACTATGATCCTTATGAAGGTTATGAAGATGATGAAATAATAAT
AGGAAGGGGGGTAACAGACCAAGAAGGCGGAATGGCCTCTATGGTATATGCAGGTAAAATAATTAAAGATCTTGGTTTAG
AGGATGATTATACATTAATAGTAACAGGTACCGTTCAGGAAGAAGATTGTGACGGATTATGCTGGCAATATATAGTTAAT
GAAGATAAAATAAAGCCAGAATTTGTTGTAATTACAGAACCAACTTCTTTAAATATATATAGAGGACATAGAGGAAGAAT
GGAAATAAAAGTTACAACCCATGGTATTAGTTGCCATGGATCAGCACCTGAAAGAGGGGATAATGCAATATTTAAAATGG
CTCCTATATTAAACGAATTAAAAGCTTTAAATGAAAATTTAAAGGATGATGAATTCTTAGGAAAAGGTACTTTAACTGTA
TCTGAAATATTCTTTTCATCACCTTCCAGATGCGCTGTTGCAGATGGATGCACTATATCTGTAGATAGAAGACTTACTGA
TGGTGAGACTTGGGAATATGCAATTCAACAGATTAAGAATTTACCATCAGTTAAAGCTGCAAAGGCTGAGGTTGAAATGT
ATAGTTATGAAAGACCTTCATATACTGATTTGGTATATCCAACAGAATGTTTCTTTCCAACTTGGGTATTAAAAGAAGAT
CATCCAATATGTGAAACAGCTGTGAAGTGTTATAAAGATTTATTTAAAAGTGAGCCAAAGGTTGATAAATGGACATTCTC
CACAAACGCAGTTTCTATAATGGGAAGATATGGAATACCATGCATTGGATTTGGACCAGGACATGAAGATCAAGCGCATG
CACCTAATGAAAGAACTTGGAAAGAAGAATTAGTAAAAGCTGCAGCAATGTATGCTCTTATACCAATAACTTATGTAAAA
GAATTTGTTAATAAATAA

Upstream 100 bases:

>100_bases
CTTCTTCATGTTGATGAAGAAAGAGTTATGGCTAGAAGTAGAGAATTAGCAAAAGAAGTTTGGAAACGATTCTAATATAA
AAAATTTTGGAGGGATTTAA

Downstream 100 bases:

>100_bases
TAATGTAGTATATATTAAATTGTGCTGTGTAATAAAATAGGATTCTGATTTATTTTATTAATATATTTTAAAAAGTTAGT
ATATTTTAAATAATAAAAAT

Product: peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MENIKKEEILKLAEKYKPEMSKFLRDMARIPSESCDEKGVILRIKEEMEKVGFDKVEIDPMGNVLGYIGHGKHVIAMDAH
IDTVGIGDRNLWNYDPYEGYEDDEIIIGRGVTDQEGGMASMVYAGKIIKDLGLEDDYTLIVTGTVQEEDCDGLCWQYIVN
EDKIKPEFVVITEPTSLNIYRGHRGRMEIKVTTHGISCHGSAPERGDNAIFKMAPILNELKALNENLKDDEFLGKGTLTV
SEIFFSSPSRCAVADGCTISVDRRLTDGETWEYAIQQIKNLPSVKAAKAEVEMYSYERPSYTDLVYPTECFFPTWVLKED
HPICETAVKCYKDLFKSEPKVDKWTFSTNAVSIMGRYGIPCIGFGPGHEDQAHAPNERTWKEELVKAAAMYALIPITYVK
EFVNK

Sequences:

>Translated_405_residues
MENIKKEEILKLAEKYKPEMSKFLRDMARIPSESCDEKGVILRIKEEMEKVGFDKVEIDPMGNVLGYIGHGKHVIAMDAH
IDTVGIGDRNLWNYDPYEGYEDDEIIIGRGVTDQEGGMASMVYAGKIIKDLGLEDDYTLIVTGTVQEEDCDGLCWQYIVN
EDKIKPEFVVITEPTSLNIYRGHRGRMEIKVTTHGISCHGSAPERGDNAIFKMAPILNELKALNENLKDDEFLGKGTLTV
SEIFFSSPSRCAVADGCTISVDRRLTDGETWEYAIQQIKNLPSVKAAKAEVEMYSYERPSYTDLVYPTECFFPTWVLKED
HPICETAVKCYKDLFKSEPKVDKWTFSTNAVSIMGRYGIPCIGFGPGHEDQAHAPNERTWKEELVKAAAMYALIPITYVK
EFVNK
>Mature_405_residues
MENIKKEEILKLAEKYKPEMSKFLRDMARIPSESCDEKGVILRIKEEMEKVGFDKVEIDPMGNVLGYIGHGKHVIAMDAH
IDTVGIGDRNLWNYDPYEGYEDDEIIIGRGVTDQEGGMASMVYAGKIIKDLGLEDDYTLIVTGTVQEEDCDGLCWQYIVN
EDKIKPEFVVITEPTSLNIYRGHRGRMEIKVTTHGISCHGSAPERGDNAIFKMAPILNELKALNENLKDDEFLGKGTLTV
SEIFFSSPSRCAVADGCTISVDRRLTDGETWEYAIQQIKNLPSVKAAKAEVEMYSYERPSYTDLVYPTECFFPTWVLKED
HPICETAVKCYKDLFKSEPKVDKWTFSTNAVSIMGRYGIPCIGFGPGHEDQAHAPNERTWKEELVKAAAMYALIPITYVK
EFVNK

Specific function: Unknown

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

Organism=Escherichia coli, GI1789236, Length=398, Percent_Identity=69.8492462311558, Blast_Score=595, Evalue=1e-171,
Organism=Escherichia coli, GI1790395, Length=380, Percent_Identity=25.2631578947368, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1788816, Length=293, Percent_Identity=22.1843003412969, Blast_Score=86, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001261
- InterPro:   IPR017706
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: NA

Molecular weight: Translated: 45764; Mature: 45764

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS00758 ARGE_DAPE_CPG2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENIKKEEILKLAEKYKPEMSKFLRDMARIPSESCDEKGVILRIKEEMEKVGFDKVEIDP
CCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHCCCCEEEECC
MGNVLGYIGHGKHVIAMDAHIDTVGIGDRNLWNYDPYEGYEDDEIIIGRGVTDQEGGMAS
CCHHHHHCCCCCEEEEEECCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEH
MVYAGKIIKDLGLEDDYTLIVTGTVQEEDCDGLCWQYIVNEDKIKPEFVVITEPTSLNIY
HHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCEEEEE
RGHRGRMEIKVTTHGISCHGSAPERGDNAIFKMAPILNELKALNENLKDDEFLGKGTLTV
ECCCCEEEEEEEEECEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCCEEE
SEIFFSSPSRCAVADGCTISVDRRLTDGETWEYAIQQIKNLPSVKAAKAEVEMYSYERPS
HHHHHCCCCCEEEECCCEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHEEECCCCC
YTDLVYPTECFFPTWVLKEDHPICETAVKCYKDLFKSEPKVDKWTFSTNAVSIMGRYGIP
CCCEECCHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCC
CIGFGPGHEDQAHAPNERTWKEELVKAAAMYALIPITYVKEFVNK
EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MENIKKEEILKLAEKYKPEMSKFLRDMARIPSESCDEKGVILRIKEEMEKVGFDKVEIDP
CCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHCCCCEEEECC
MGNVLGYIGHGKHVIAMDAHIDTVGIGDRNLWNYDPYEGYEDDEIIIGRGVTDQEGGMAS
CCHHHHHCCCCCEEEEEECCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEH
MVYAGKIIKDLGLEDDYTLIVTGTVQEEDCDGLCWQYIVNEDKIKPEFVVITEPTSLNIY
HHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCEEEEE
RGHRGRMEIKVTTHGISCHGSAPERGDNAIFKMAPILNELKALNENLKDDEFLGKGTLTV
ECCCCEEEEEEEEECEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCCEEE
SEIFFSSPSRCAVADGCTISVDRRLTDGETWEYAIQQIKNLPSVKAAKAEVEMYSYERPS
HHHHHCCCCCEEEECCCEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHEEECCCCC
YTDLVYPTECFFPTWVLKEDHPICETAVKCYKDLFKSEPKVDKWTFSTNAVSIMGRYGIP
CCCEECCHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCC
CIGFGPGHEDQAHAPNERTWKEELVKAAAMYALIPITYVKEFVNK
EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]