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The map label for this gene is ssnA [H]

Identifier: 226950314

GI number: 226950314

Start: 3304801

End: 3306129

Strand: Reverse

Name: ssnA [H]

Synonym: CLM_3279

Alternate gene names: 226950314

Gene position: 3306129-3304801 (Counterclockwise)

Preceding gene: 226950315

Following gene: 226950313

Centisome position: 79.56

GC content: 32.2

Gene sequence:

>1329_bases
ATGCTGCTGATTGGAAATGGAAAGGTTATAACTAGAGATAATACTAGACAAATCATAGAAAATGGTTGTATTGCTGTTGA
TGAAAATAAAATAATTGAGATTGGATCAACAGAAGCTTTAAAAAATAAGTATAAGAAATCCCAATTTATAGATGCTAAAG
GAAAACTTATAATGCCAGGATTTATAAATACTCATATGCATTATTATAGTACTTTCGCGAGAGGCATGGCTAATGACAGT
CCACCGGCAAAGTCATTATGTGATATACTTACAGGTCTTTGGTGGAGATTGGATAAGGTATTAACCTTAGAAGATGTTTA
CTATAGTGCTGCGGTACCTATGATTGATCAAATAAAGAATGGTGTAACAACTGTATTTGATCACCATGCTAGTGCTCATG
CTGTTAAAGGAAGCTTATTTAAAATTGCAGAAGCAGCAGAGGCAATGGGAATTCGTAGTAATTTGTGTTACGAAACTTCT
GATAGAGATGGGGAAAAGATTGCACAAGAAGGTATTAATGAGAATGTAGAATTTATTAAGCACTGTAATGCTAAAAATGA
TGACATGATCAAAGGTATGTTTGGACTTCATGCATCTATGACAATATCTGATAAAACTCTAGAAAAATGTGTAGACGCAG
TTAAAGGTTTAAATACAGGATTCCATGTTCATTGTGGAGAAGGCATTGAAGATTTAGAGGATTCAAAGAAAAAATACGGC
AAGGGAATTATAGAAAGATGGAATGATGCAGGAGTTCTTTGTGATAAAACTATAGCAGTACATTGTATTTATGTTTCAGA
TGAAGAGATGGATATGCTTAAAGAAAAGAATACAATAGTAGTTCATAATCCAGAATCAAATATGGGTAATGCAGTAGGTG
TTTCTCCTGTACTTAAGATGTACAAAAAAGGCATTTTATTAGGATTAGGAACTGATGGATATACTTCAGATATTATTGAA
TCTTATAAAGTAGCAAACATTATTCATAAACATGCTACTTCCGATTCAACTGTGGCATGGACCGAAATTCCTGAAATGTT
ATTTGAAAACAATGGAAAAATTACTGAAAGATTTATTGATGGTAAGGTTGGAGTTTTAAAAGAGGGTGCTCTAGCAGATA
TAATCGTAGTAGATTATAATCCACCAACACCAATTAATGAAAATAATATAAACAGTCATATATTATTTGGTATCAATGGA
AGACATGTAGATACAACTATTATAAATGGTAAAGTTTTAATGGAAGACAGAAAACTTCTTCATGTTGATGAAGAAAGAGT
TATGGCTAGAAGTAGAGAATTAGCAAAAGAAGTTTGGAAACGATTCTAA

Upstream 100 bases:

>100_bases
AAATGATGTTTCAAAAGAAATGGACAGTATGATTAAAACTTTCATAAATGAATATGGTTATATGTTATAAATTAATATTA
AAAATGGGGAGGTAAATCAT

Downstream 100 bases:

>100_bases
TATAAAAAATTTTGGAGGGATTTAAATGGAAAACATTAAAAAGGAAGAAATATTAAAATTAGCTGAAAAATATAAACCAG
AAATGTCAAAATTCTTAAGA

Product: putative chlorohydrolase/aminohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MLLIGNGKVITRDNTRQIIENGCIAVDENKIIEIGSTEALKNKYKKSQFIDAKGKLIMPGFINTHMHYYSTFARGMANDS
PPAKSLCDILTGLWWRLDKVLTLEDVYYSAAVPMIDQIKNGVTTVFDHHASAHAVKGSLFKIAEAAEAMGIRSNLCYETS
DRDGEKIAQEGINENVEFIKHCNAKNDDMIKGMFGLHASMTISDKTLEKCVDAVKGLNTGFHVHCGEGIEDLEDSKKKYG
KGIIERWNDAGVLCDKTIAVHCIYVSDEEMDMLKEKNTIVVHNPESNMGNAVGVSPVLKMYKKGILLGLGTDGYTSDIIE
SYKVANIIHKHATSDSTVAWTEIPEMLFENNGKITERFIDGKVGVLKEGALADIIVVDYNPPTPINENNINSHILFGING
RHVDTTIINGKVLMEDRKLLHVDEERVMARSRELAKEVWKRF

Sequences:

>Translated_442_residues
MLLIGNGKVITRDNTRQIIENGCIAVDENKIIEIGSTEALKNKYKKSQFIDAKGKLIMPGFINTHMHYYSTFARGMANDS
PPAKSLCDILTGLWWRLDKVLTLEDVYYSAAVPMIDQIKNGVTTVFDHHASAHAVKGSLFKIAEAAEAMGIRSNLCYETS
DRDGEKIAQEGINENVEFIKHCNAKNDDMIKGMFGLHASMTISDKTLEKCVDAVKGLNTGFHVHCGEGIEDLEDSKKKYG
KGIIERWNDAGVLCDKTIAVHCIYVSDEEMDMLKEKNTIVVHNPESNMGNAVGVSPVLKMYKKGILLGLGTDGYTSDIIE
SYKVANIIHKHATSDSTVAWTEIPEMLFENNGKITERFIDGKVGVLKEGALADIIVVDYNPPTPINENNINSHILFGING
RHVDTTIINGKVLMEDRKLLHVDEERVMARSRELAKEVWKRF
>Mature_442_residues
MLLIGNGKVITRDNTRQIIENGCIAVDENKIIEIGSTEALKNKYKKSQFIDAKGKLIMPGFINTHMHYYSTFARGMANDS
PPAKSLCDILTGLWWRLDKVLTLEDVYYSAAVPMIDQIKNGVTTVFDHHASAHAVKGSLFKIAEAAEAMGIRSNLCYETS
DRDGEKIAQEGINENVEFIKHCNAKNDDMIKGMFGLHASMTISDKTLEKCVDAVKGLNTGFHVHCGEGIEDLEDSKKKYG
KGIIERWNDAGVLCDKTIAVHCIYVSDEEMDMLKEKNTIVVHNPESNMGNAVGVSPVLKMYKKGILLGLGTDGYTSDIIE
SYKVANIIHKHATSDSTVAWTEIPEMLFENNGKITERFIDGKVGVLKEGALADIIVVDYNPPTPINENNINSHILFGING
RHVDTTIINGKVLMEDRKLLHVDEERVMARSRELAKEVWKRF

Specific function: Unknown

COG id: COG0402

COG function: function code FR; Cytosine deaminase and related metal-dependent hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATZ/TRZ family [H]

Homologues:

Organism=Homo sapiens, GI4758426, Length=341, Percent_Identity=23.7536656891496, Blast_Score=85, Evalue=1e-16,
Organism=Escherichia coli, GI87082177, Length=424, Percent_Identity=33.7264150943396, Blast_Score=268, Evalue=7e-73,
Organism=Saccharomyces cerevisiae, GI6319963, Length=341, Percent_Identity=21.7008797653959, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24643849, Length=308, Percent_Identity=23.3766233766234, Blast_Score=82, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006680
- InterPro:   IPR011059
- InterPro:   IPR017700 [H]

Pfam domain/function: PF01979 Amidohydro_1 [H]

EC number: NA

Molecular weight: Translated: 49218; Mature: 49218

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLIGNGKVITRDNTRQIIENGCIAVDENKIIEIGSTEALKNKYKKSQFIDAKGKLIMPG
CEEECCCEEEECCCHHHHHHCCCEEECCCCEEEECCHHHHHHHHHHHHEECCCCCEEECC
FINTHMHYYSTFARGMANDSPPAKSLCDILTGLWWRLDKVLTLEDVYYSAAVPMIDQIKN
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCHHHHHHHC
GVTTVFDHHASAHAVKGSLFKIAEAAEAMGIRSNLCYETSDRDGEKIAQEGINENVEFIK
CHHHHHHCCCCHHHHCCHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHCCCCCHHHHH
HCNAKNDDMIKGMFGLHASMTISDKTLEKCVDAVKGLNTGFHVHCGEGIEDLEDSKKKYG
HCCCCCCHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHC
KGIIERWNDAGVLCDKTIAVHCIYVSDEEMDMLKEKNTIVVHNPESNMGNAVGVSPVLKM
CHHHHCCCCCCCEEECEEEEEEEEECCHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHH
YKKGILLGLGTDGYTSDIIESYKVANIIHKHATSDSTVAWTEIPEMLFENNGKITERFID
HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCEEEHHHC
GKVGVLKEGALADIIVVDYNPPTPINENNINSHILFGINGRHVDTTIINGKVLMEDRKLL
CCCCEECCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEEECCEEEECCCCEE
HVDEERVMARSRELAKEVWKRF
EECHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLLIGNGKVITRDNTRQIIENGCIAVDENKIIEIGSTEALKNKYKKSQFIDAKGKLIMPG
CEEECCCEEEECCCHHHHHHCCCEEECCCCEEEECCHHHHHHHHHHHHEECCCCCEEECC
FINTHMHYYSTFARGMANDSPPAKSLCDILTGLWWRLDKVLTLEDVYYSAAVPMIDQIKN
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCHHHHHHHC
GVTTVFDHHASAHAVKGSLFKIAEAAEAMGIRSNLCYETSDRDGEKIAQEGINENVEFIK
CHHHHHHCCCCHHHHCCHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHCCCCCHHHHH
HCNAKNDDMIKGMFGLHASMTISDKTLEKCVDAVKGLNTGFHVHCGEGIEDLEDSKKKYG
HCCCCCCHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHC
KGIIERWNDAGVLCDKTIAVHCIYVSDEEMDMLKEKNTIVVHNPESNMGNAVGVSPVLKM
CHHHHCCCCCCCEEECEEEEEEEEECCHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHH
YKKGILLGLGTDGYTSDIIESYKVANIIHKHATSDSTVAWTEIPEMLFENNGKITERFID
HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCEEEHHHC
GKVGVLKEGALADIIVVDYNPPTPINENNINSHILFGINGRHVDTTIINGKVLMEDRKLL
CCCCEECCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEEECCEEEECCCCEE
HVDEERVMARSRELAKEVWKRF
EECHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7764507; 9278503; 10074077 [H]