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The map label for this gene is xseB [H]

Identifier: 226949182

GI number: 226949182

Start: 2159294

End: 2159509

Strand: Reverse

Name: xseB [H]

Synonym: CLM_2101

Alternate gene names: 226949182

Gene position: 2159509-2159294 (Counterclockwise)

Preceding gene: 226949183

Following gene: 226949181

Centisome position: 51.97

GC content: 26.85

Gene sequence:

>216_bases
ATGGGAAGAAAAAAAGAATCCTTTGAAAATATGCTTGAGAAATTAGAAACTATAGTGGACAGTATGGATAATGGAGAAAT
AACCTTAGAAGATTCCATGAAAAGTTATGAAGAAGGAATAAAATTATGTAATAAATTATATAAAGTACTAAAAGATGCAG
AAGGTAAAATAAAGATTTTAGAGGATAACAAAGAAGAAGATTTTGAAAGCTCATAG

Upstream 100 bases:

>100_bases
CAGATATCATAGTAAACTTTATATTTATGTTATGGTAGTTTATATTTAATAATTTAGAAATTATTAAATTGTAAATAATA
AACTAAATTAGGAGGAAAAT

Downstream 100 bases:

>100_bases
ACATATATTATGTTTTTACTAAAGACTTTGAATTAATTAAAAGAAAGTTCAGATAGAGTAATAATTTAATCTGAATTAGG
ATTTACTTTACAGCTAAAAT

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit [H]

Number of amino acids: Translated: 71; Mature: 70

Protein sequence:

>71_residues
MGRKKESFENMLEKLETIVDSMDNGEITLEDSMKSYEEGIKLCNKLYKVLKDAEGKIKILEDNKEEDFESS

Sequences:

>Translated_71_residues
MGRKKESFENMLEKLETIVDSMDNGEITLEDSMKSYEEGIKLCNKLYKVLKDAEGKIKILEDNKEEDFESS
>Mature_70_residues
GRKKESFENMLEKLETIVDSMDNGEITLEDSMKSYEEGIKLCNKLYKVLKDAEGKIKILEDNKEEDFESS

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003761
- ProDom:   PD028235 [H]

Pfam domain/function: PF02609 Exonuc_VII_S [H]

EC number: =3.1.11.6 [H]

Molecular weight: Translated: 8238; Mature: 8107

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRKKESFENMLEKLETIVDSMDNGEITLEDSMKSYEEGIKLCNKLYKVLKDAEGKIKIL
CCCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
EDNKEEDFESS
CCCCCCCCCCC
>Mature Secondary Structure 
GRKKESFENMLEKLETIVDSMDNGEITLEDSMKSYEEGIKLCNKLYKVLKDAEGKIKIL
CCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
EDNKEEDFESS
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA