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The map label for this gene is ydaM [H]

Identifier: 226949057

GI number: 226949057

Start: 2037234

End: 2038637

Strand: Reverse

Name: ydaM [H]

Synonym: CLM_1973

Alternate gene names: 226949057

Gene position: 2038637-2037234 (Counterclockwise)

Preceding gene: 226949060

Following gene: 226949056

Centisome position: 49.06

GC content: 28.21

Gene sequence:

>1404_bases
ATGAAGGATTTTATTTTTGATTTAACTTTAATTTTTCAAATTTTTGTATTTGTTATAACTCTATATTACCTTATATTATC
TCTATTTGGTATATACAAAAAAAGAGATAATGGTGCCGAAAATTGTACACCAAAAAAGAAATTCGCTCTAGTAGTAGCAG
CTCATAATGAAGAAATGGTTATAGGAAAAATAATAGAGAGCTTAGAAGCACTAGACTATCCTAAAAATTTGTATGATATT
TTTATAATAGCCGACAATTGTACTGATAATACTGCTAAAATCGCTAAAACTTATGATGGAGTATATGTTTGTGAAAGAAA
TGTACCAGATAAACGAGGGAAAGGTTATGCTTTAGAATGGATGTTTTCTAAATTGTTTAATATGGACAAAGACTATGATG
CTATAGCAATATTCGATGCAGATAATTTAGTTTCTAAAAACTTTTTAAAAGAAATGAATTACAAAATGCTTAAAGGTTAT
AAAGTAGTTCAAGGATATATAGACAGTAAAAATCCTAATGATTCTTGGATAACCGGTTCTTATTCTATAGCTTTTTGGAC
AGCAAATAGATTATTTCAATTAGCAAGAGCAAATTTAGGTCTATCAAATCAAATAGGTGGTACTGGTTTTTGTATGGATT
CAGAAACTTTAAAGGAGTTAGGTTGGGGTGCCACTTGTTTAACAGAGGATTTAGAATTCACTTGCAAATTAGTTTTAAAT
GGACATAAAGTAGGTTGGGCACATAATGCTAGAGTTTATGATGAAAAACCTCTTACTTTAAAACAATCTTGGAATCAAAG
GAAAAGGTGGATGCAAGGATTTGCAGATGTATCTTCAAGATTTTTTACAAAGCTCATTAAAAAAGCTTTCAAAGAAAGAA
GTTTTGTCGCCCTAGATTGTGCTTTATATACAGTGCAACCTTTTGTTACTCTTTTGCTTGCGTTGTCAGCTATCCTTACT
TTAATACAAAATAATTCTTCTAGAGGAGCTAATATATTCGTAATAAGTTATTTATTTTCACCTTGGGTATGGAAGACGTT
TAGCATAATACAATTTTTATTTACTCCTCTTATTATGCTCTTAGAAAAGAAGCTTTCTAAAGGAATGTTCTTAACATTTT
CAGCCTATTCTTTAAATGTATTTTTATTTGCATTGATTTTAGGTAATAAACCAAAATTATATGAAGTAGCTGTCTTATCA
ATAATATATTTAGGAGCTTTCATATTACTATTATATATAGTAGATAGAAAAAAATCCTTAAAAATGTTTATATGGTATTT
ATTATATGGAATATACACATTGACTTGGATACCAATAACAATACAAGGAATATTAAATAAAAATAATAAAGAATGGAGCC
ACACAAAACATATAAGAGAAATGAGCATACAAGAAATGGATTAA

Upstream 100 bases:

>100_bases
AACAACTATACGAAAATGTGTTATTATGAATAACGGTGTAATCTTTAAAAATAAATTAAGAACAGTATTATTAAATATTT
AAATAGAAAGGGTAAAACTA

Downstream 100 bases:

>100_bases
ACAGACCAAAGCACAGGCTATATGGGCCTGTGTTTTTTTATATGCAAAATTTTAAAATAGCTATAAAACTATCTCAAAAA
CTTTCTGTTAAAAATAATAT

Product: group 2 family glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MKDFIFDLTLIFQIFVFVITLYYLILSLFGIYKKRDNGAENCTPKKKFALVVAAHNEEMVIGKIIESLEALDYPKNLYDI
FIIADNCTDNTAKIAKTYDGVYVCERNVPDKRGKGYALEWMFSKLFNMDKDYDAIAIFDADNLVSKNFLKEMNYKMLKGY
KVVQGYIDSKNPNDSWITGSYSIAFWTANRLFQLARANLGLSNQIGGTGFCMDSETLKELGWGATCLTEDLEFTCKLVLN
GHKVGWAHNARVYDEKPLTLKQSWNQRKRWMQGFADVSSRFFTKLIKKAFKERSFVALDCALYTVQPFVTLLLALSAILT
LIQNNSSRGANIFVISYLFSPWVWKTFSIIQFLFTPLIMLLEKKLSKGMFLTFSAYSLNVFLFALILGNKPKLYEVAVLS
IIYLGAFILLLYIVDRKKSLKMFIWYLLYGIYTLTWIPITIQGILNKNNKEWSHTKHIREMSIQEMD

Sequences:

>Translated_467_residues
MKDFIFDLTLIFQIFVFVITLYYLILSLFGIYKKRDNGAENCTPKKKFALVVAAHNEEMVIGKIIESLEALDYPKNLYDI
FIIADNCTDNTAKIAKTYDGVYVCERNVPDKRGKGYALEWMFSKLFNMDKDYDAIAIFDADNLVSKNFLKEMNYKMLKGY
KVVQGYIDSKNPNDSWITGSYSIAFWTANRLFQLARANLGLSNQIGGTGFCMDSETLKELGWGATCLTEDLEFTCKLVLN
GHKVGWAHNARVYDEKPLTLKQSWNQRKRWMQGFADVSSRFFTKLIKKAFKERSFVALDCALYTVQPFVTLLLALSAILT
LIQNNSSRGANIFVISYLFSPWVWKTFSIIQFLFTPLIMLLEKKLSKGMFLTFSAYSLNVFLFALILGNKPKLYEVAVLS
IIYLGAFILLLYIVDRKKSLKMFIWYLLYGIYTLTWIPITIQGILNKNNKEWSHTKHIREMSIQEMD
>Mature_467_residues
MKDFIFDLTLIFQIFVFVITLYYLILSLFGIYKKRDNGAENCTPKKKFALVVAAHNEEMVIGKIIESLEALDYPKNLYDI
FIIADNCTDNTAKIAKTYDGVYVCERNVPDKRGKGYALEWMFSKLFNMDKDYDAIAIFDADNLVSKNFLKEMNYKMLKGY
KVVQGYIDSKNPNDSWITGSYSIAFWTANRLFQLARANLGLSNQIGGTGFCMDSETLKELGWGATCLTEDLEFTCKLVLN
GHKVGWAHNARVYDEKPLTLKQSWNQRKRWMQGFADVSSRFFTKLIKKAFKERSFVALDCALYTVQPFVTLLLALSAILT
LIQNNSSRGANIFVISYLFSPWVWKTFSIIQFLFTPLIMLLEKKLSKGMFLTFSAYSLNVFLFALILGNKPKLYEVAVLS
IIYLGAFILLLYIVDRKKSLKMFIWYLLYGIYTLTWIPITIQGILNKNNKEWSHTKHIREMSIQEMD

Specific function: Unknown

COG id: COG1215

COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis

Gene ontology:

Cell location: Membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 53929; Mature: 53929

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDFIFDLTLIFQIFVFVITLYYLILSLFGIYKKRDNGAENCTPKKKFALVVAAHNEEMV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHH
IGKIIESLEALDYPKNLYDIFIIADNCTDNTAKIAKTYDGVYVCERNVPDKRGKGYALEW
HHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHCCCEEEEECCCCCCCCCCCHHHH
MFSKLFNMDKDYDAIAIFDADNLVSKNFLKEMNYKMLKGYKVVQGYIDSKNPNDSWITGS
HHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCHHHHCCHHHEEEEECCCCCCCCEEECC
YSIAFWTANRLFQLARANLGLSNQIGGTGFCMDSETLKELGWGATCLTEDLEFTCKLVLN
EEEEEEEHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHHCCCCHHHHHHHHHEEEEEEEC
GHKVGWAHNARVYDEKPLTLKQSWNQRKRWMQGFADVSSRFFTKLIKKAFKERSFVALDC
CCEECCEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHH
ALYTVQPFVTLLLALSAILTLIQNNSSRGANIFVISYLFSPWVWKTFSIIQFLFTPLIML
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHHH
LEKKLSKGMFLTFSAYSLNVFLFALILGNKPKLYEVAVLSIIYLGAFILLLYIVDRKKSL
HHHHHCCCEEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
KMFIWYLLYGIYTLTWIPITIQGILNKNNKEWSHTKHIREMSIQEMD
HHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKDFIFDLTLIFQIFVFVITLYYLILSLFGIYKKRDNGAENCTPKKKFALVVAAHNEEMV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHH
IGKIIESLEALDYPKNLYDIFIIADNCTDNTAKIAKTYDGVYVCERNVPDKRGKGYALEW
HHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHCCCEEEEECCCCCCCCCCCHHHH
MFSKLFNMDKDYDAIAIFDADNLVSKNFLKEMNYKMLKGYKVVQGYIDSKNPNDSWITGS
HHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCHHHHCCHHHEEEEECCCCCCCCEEECC
YSIAFWTANRLFQLARANLGLSNQIGGTGFCMDSETLKELGWGATCLTEDLEFTCKLVLN
EEEEEEEHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHHCCCCHHHHHHHHHEEEEEEEC
GHKVGWAHNARVYDEKPLTLKQSWNQRKRWMQGFADVSSRFFTKLIKKAFKERSFVALDC
CCEECCEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHH
ALYTVQPFVTLLLALSAILTLIQNNSSRGANIFVISYLFSPWVWKTFSIIQFLFTPLIML
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHHH
LEKKLSKGMFLTFSAYSLNVFLFALILGNKPKLYEVAVLSIIYLGAFILLLYIVDRKKSL
HHHHHCCCEEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
KMFIWYLLYGIYTLTWIPITIQGILNKNNKEWSHTKHIREMSIQEMD
HHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]