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The map label for this gene is ziaR [H]

Identifier: 226947713

GI number: 226947713

Start: 606140

End: 606505

Strand: Direct

Name: ziaR [H]

Synonym: CLM_0560

Alternate gene names: 226947713

Gene position: 606140-606505 (Clockwise)

Preceding gene: 226947711

Following gene: 226947714

Centisome position: 14.59

GC content: 28.96

Gene sequence:

>366_bases
ATGGATAAAGAAAAACAGATAGATACTTGTACATGCAATGTAATTCATCATGATGTAGTAGATAAAGTTAAAGATAATAT
GATAGAAGAAGATAAAGCACAAGACTTAGGAGATTTTTTTAAGGTTCTATCAGAACCGACTAGAATAAAAATTTTATATG
CATTATCATCATCAGAAATGTGTGTATGTGATATTTCAAATCTTCTTAATATGACACAATCAGCCGTGTCTCATCAACTT
AAAGTTTTAAGAACAGCTAGACTTATAAAATTTAGAAAAGAGGGTAAAGTTGTTTATTACTCATTAGATGACTCACATGT
AGAGAATGTGTTTAAGCAAGGACTAGAACACATAATGCATAGATAA

Upstream 100 bases:

>100_bases
TTTAAAAATAAATATGATACATTATACTTAAACATATGAACAATTATTCATATGTTCACATATGATATTAATTAAGATAG
AGATAAAGGAGAATGCAAAT

Downstream 100 bases:

>100_bases
AATTAAGTTTAATATTTTATTGTAATTTTAGAAATTTTAATTTTTTAATAACTATTTTAGAAGGATGGTGGGATTATGAT
TATAAAAAAGAAATTGCTTT

Product: putative cadmium resistance transcriptional regulator CadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MDKEKQIDTCTCNVIHHDVVDKVKDNMIEEDKAQDLGDFFKVLSEPTRIKILYALSSSEMCVCDISNLLNMTQSAVSHQL
KVLRTARLIKFRKEGKVVYYSLDDSHVENVFKQGLEHIMHR

Sequences:

>Translated_121_residues
MDKEKQIDTCTCNVIHHDVVDKVKDNMIEEDKAQDLGDFFKVLSEPTRIKILYALSSSEMCVCDISNLLNMTQSAVSHQL
KVLRTARLIKFRKEGKVVYYSLDDSHVENVFKQGLEHIMHR
>Mature_121_residues
MDKEKQIDTCTCNVIHHDVVDKVKDNMIEEDKAQDLGDFFKVLSEPTRIKILYALSSSEMCVCDISNLLNMTQSAVSHQL
KVLRTARLIKFRKEGKVVYYSLDDSHVENVFKQGLEHIMHR

Specific function: Transcriptional repressor of the expression of the ziaA gene. Controls zinc homeostasis by triggering ziaA-mediated efflux of excess zinc into the periplasm [H]

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR018334
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 13998; Mature: 13998

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS00846 HTH_ARSR_1 ; PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKEKQIDTCTCNVIHHDVVDKVKDNMIEEDKAQDLGDFFKVLSEPTRIKILYALSSSEM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCE
CVCDISNLLNMTQSAVSHQLKVLRTARLIKFRKEGKVVYYSLDDSHVENVFKQGLEHIMH
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHC
R
C
>Mature Secondary Structure
MDKEKQIDTCTCNVIHHDVVDKVKDNMIEEDKAQDLGDFFKVLSEPTRIKILYALSSSEM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCE
CVCDISNLLNMTQSAVSHQLKVLRTARLIKFRKEGKVVYYSLDDSHVENVFKQGLEHIMH
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 9724772 [H]