Click here to switch to the map view.

The map label for this gene is ycjP [H]

Identifier: 226225387

GI number: 226225387

Start: 2892469

End: 2893320

Strand: Reverse

Name: ycjP [H]

Synonym: Lm4b_02810

Alternate gene names: 226225387

Gene position: 2893320-2892469 (Counterclockwise)

Preceding gene: 226225388

Following gene: 226225386

Centisome position: 99.33

GC content: 37.32

Gene sequence:

>852_bases
ATGGCGGTAAGTAGTAAAAAGTCAAAAAGAACAAAGAAAATCGCGTTTTATGTGACGATGGTTGCATTTTTATGTATCAC
GTTGTTCCCATTTGCGATTATGTTAATGACTTCATTTAAGAGCAGTAAAGAAGCCATTTCAACACATCCAACATTTTTCC
CGAAAGAATTCACTTTCCAGCATTACATCGATATTTTCAACCCAGATATTTTTCCGTTTTTAACGTACTTTAAAAATAGT
TTGGTTGTTTCGGTTTTTGCGGCCGGGATTGCAGTTGTTTTGGGGATTTTAGGGGCTTATGCGTTGTCGAAATTACGCTT
TAAAGGGCGGATGACGATTAATGCAAGTTTTTATACGGTTTACATGTTCTCCGGAATCTTGTTAATTGTTCCGTTGTTCA
AAATAATTTCGAGTTTGGGGTTGTATGATACGGAAACAGCTTTAATTATCACAATGGTTGTACAAACACTACCAACTGCG
GTATTTATGCTGAAAAGTTATTTTGATACGATTCCAACTGATATTGAAGAAGCTGCAATGATGGACGGGCTGAATCGTTT
CCAGATTATTTTACGAATTATCGTTCCACTTGCGATTTCGGGTATTGTTTCTGTGTTCGTATATTGCTTCATGGTGGCTT
GGAATGATTATCTGTTTGCTTCGATTTTCCTATCTAGCTCAGAGAAATTCACGTTACCGATTGGCTTGAATACACTATTT
AGTACACCAGATTATATTTGGGGTAGAATGATGGCTGCATCGCTTGTTACGGCGCTTCCAGTCGTTATTATGTACGCAAT
TTCAGAACGATTTATCAAAGGAAACTTAACAGACGGTGGAGTTAAGGGATAA

Upstream 100 bases:

>100_bases
TTCGCATTCAATGATTTAGGGAAAGCAGCAGCGATTTCTGTCATATTATTTGTCATTATTTTTGTTGTGATTATTTTTGC
AAGAAAGCGGGTGGATTTGA

Downstream 100 bases:

>100_bases
GAAAGGAAGTTATTGAAAATGAAAAAATTAGTAGCGACAGCGCCTCGTGTGGCGGAATTAATAGAATATAATGATCGTGA
AGTTTTAGAAGATGAAGTGA

Product: sugar ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MAVSSKKSKRTKKIAFYVTMVAFLCITLFPFAIMLMTSFKSSKEAISTHPTFFPKEFTFQHYIDIFNPDIFPFLTYFKNS
LVVSVFAAGIAVVLGILGAYALSKLRFKGRMTINASFYTVYMFSGILLIVPLFKIISSLGLYDTETALIITMVVQTLPTA
VFMLKSYFDTIPTDIEEAAMMDGLNRFQIILRIIVPLAISGIVSVFVYCFMVAWNDYLFASIFLSSSEKFTLPIGLNTLF
STPDYIWGRMMAASLVTALPVVIMYAISERFIKGNLTDGGVKG

Sequences:

>Translated_283_residues
MAVSSKKSKRTKKIAFYVTMVAFLCITLFPFAIMLMTSFKSSKEAISTHPTFFPKEFTFQHYIDIFNPDIFPFLTYFKNS
LVVSVFAAGIAVVLGILGAYALSKLRFKGRMTINASFYTVYMFSGILLIVPLFKIISSLGLYDTETALIITMVVQTLPTA
VFMLKSYFDTIPTDIEEAAMMDGLNRFQIILRIIVPLAISGIVSVFVYCFMVAWNDYLFASIFLSSSEKFTLPIGLNTLF
STPDYIWGRMMAASLVTALPVVIMYAISERFIKGNLTDGGVKG
>Mature_282_residues
AVSSKKSKRTKKIAFYVTMVAFLCITLFPFAIMLMTSFKSSKEAISTHPTFFPKEFTFQHYIDIFNPDIFPFLTYFKNSL
VVSVFAAGIAVVLGILGAYALSKLRFKGRMTINASFYTVYMFSGILLIVPLFKIISSLGLYDTETALIITMVVQTLPTAV
FMLKSYFDTIPTDIEEAAMMDGLNRFQIILRIIVPLAISGIVSVFVYCFMVAWNDYLFASIFLSSSEKFTLPIGLNTLFS
TPDYIWGRMMAASLVTALPVVIMYAISERFIKGNLTDGGVKG

Specific function: Probably part of the binding-protein-dependent transport system ycjNOP. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=277, Percent_Identity=79.0613718411552, Blast_Score=434, Evalue=1e-123,
Organism=Escherichia coli, GI1790464, Length=300, Percent_Identity=26.6666666666667, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1789860, Length=262, Percent_Identity=24.0458015267176, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787368, Length=198, Percent_Identity=27.2727272727273, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31640; Mature: 31509

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AVSSKKSKRTKKIAFYVTMVAFLCITLFPFAIMLMTSFKSSKEAISTHPTFFPKEFTFQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
HYIDIFNPDIFPFLTYFKNSLVVSVFAAGIAVVLGILGAYALSKLRFKGRMTINASFYTV
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHH
YMFSGILLIVPLFKIISSLGLYDTETALIITMVVQTLPTAVFMLKSYFDTIPTDIEEAAM
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
MDGLNRFQIILRIIVPLAISGIVSVFVYCFMVAWNDYLFASIFLSSSEKFTLPIGLNTLF
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
STPDYIWGRMMAASLVTALPVVIMYAISERFIKGNLTDGGVKG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]